Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47203 * 274.99516 * 3 2 1 5 5 H 1.48493 * 109.46960 * 34.99657 * 3 2 1 6 6 H 1.48500 * 109.46797 * 154.99315 * 3 2 1 7 7 C 1.37877 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00158 * 189.46450 * 7 2 1 9 9 C 1.50701 * 119.99826 * 9.47458 * 7 2 1 10 10 C 1.53043 * 109.45971 * 185.43439 * 9 7 2 11 11 C 1.53193 * 109.31187 * 178.62672 * 10 9 7 12 12 N 1.46920 * 108.89528 * 54.56027 * 11 10 9 13 13 C 1.34774 * 120.63155 * 126.45963 * 12 11 10 14 14 S 1.71203 * 119.99775 * 355.05182 * 13 12 11 15 15 N 1.34776 * 120.00378 * 175.04848 * 13 12 11 16 16 C 1.46501 * 120.00464 * 185.00974 * 15 13 12 17 17 C 1.54262 * 110.03221 * 272.16799 * 16 15 13 18 18 C 1.54886 * 104.19692 * 217.10364 * 17 16 15 19 19 C 1.54891 * 102.74864 * 37.93927 * 18 17 16 20 20 C 1.53869 * 110.03405 * 154.99819 * 16 15 13 21 21 C 1.46961 * 118.71604 * 306.64152 * 12 11 10 22 22 C 1.53037 * 109.45284 * 65.37123 * 9 7 2 23 23 H 0.97000 * 119.99960 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.45573 * 305.40081 * 9 7 2 25 25 H 1.08992 * 109.49680 * 58.67342 * 10 9 7 26 26 H 1.09002 * 109.52291 * 298.58994 * 10 9 7 27 27 H 1.09003 * 109.58618 * 174.42528 * 11 10 9 28 28 H 1.09006 * 109.58460 * 294.70427 * 11 10 9 29 29 H 0.97000 * 119.99745 * 5.00324 * 15 13 12 30 30 H 1.09006 * 110.01583 * 33.60255 * 16 15 13 31 31 H 1.09001 * 110.48524 * 335.77907 * 17 16 15 32 32 H 1.08994 * 110.49189 * 98.42046 * 17 16 15 33 33 H 1.08994 * 110.75662 * 279.62500 * 18 17 16 34 34 H 1.09000 * 110.91699 * 156.32578 * 18 17 16 35 35 H 1.08998 * 110.48749 * 203.38152 * 19 18 17 36 36 H 1.08998 * 110.48395 * 80.73666 * 19 18 17 37 37 H 1.09001 * 110.03220 * 238.56917 * 20 16 15 38 38 H 1.08994 * 110.03472 * 359.95018 * 20 16 15 39 39 H 1.09002 * 109.46848 * 293.57357 * 21 12 11 40 40 H 1.09001 * 109.71083 * 173.28615 * 21 12 11 41 41 H 1.09004 * 109.49546 * 301.32766 * 22 9 7 42 42 H 1.08995 * 109.49646 * 61.39507 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5033 2.6198 0.8030 6 1 3.5954 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0735 -1.2004 0.1533 9 6 1.2665 -2.4901 -0.2160 10 6 2.2329 -3.6631 -0.0361 11 6 1.4719 -4.9796 -0.2220 12 7 0.7886 -4.9547 -1.5224 13 6 0.9690 -5.9509 -2.4121 14 16 2.0979 -7.1960 -2.0857 15 7 0.2607 -5.9670 -3.5586 16 6 0.3751 -7.1047 -4.4744 17 6 1.5445 -6.8784 -5.4548 18 6 1.0367 -7.4676 -6.7942 19 6 -0.4590 -7.0649 -6.7996 20 6 -0.8987 -7.2234 -5.3294 21 6 -0.0920 -3.8207 -1.8358 22 6 0.6866 -2.5172 -1.6320 23 1 -0.4850 0.8400 0.0004 24 1 0.4571 -2.5720 0.5096 25 1 2.6632 -3.6298 0.9647 26 1 3.0295 -3.5957 -0.7771 27 1 2.1727 -5.8140 -0.1932 28 1 0.7367 -5.0923 0.5749 29 1 -0.3249 -5.2254 -3.7773 30 1 0.5329 -8.0238 -3.9099 31 1 1.7526 -5.8137 -5.5610 32 1 2.4340 -7.4100 -5.1170 33 1 1.1448 -8.5521 -6.8048 34 1 1.5601 -7.0204 -7.6393 35 1 -1.0316 -7.7328 -7.4431 36 1 -0.5744 -6.0304 -7.1229 37 1 -1.3587 -8.2003 -5.1805 38 1 -1.6024 -6.4350 -5.0624 39 1 -0.9563 -3.8376 -1.1719 40 1 -0.4251 -3.8891 -2.8714 41 1 0.0164 -1.6682 -1.7669 42 1 1.4974 -2.4597 -2.3582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198536949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -16.312015 kcal Electronic energy + Delta-G solvation = -20580.258213 eV Core-core repulsion = 17684.636532 eV Total energy + Delta-G solvation = -2895.621681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13613 -39.48170 -36.93898 -35.04845 -33.08459 -32.16160 -29.70093 -29.11388 -27.72935 -25.60104 -24.37132 -22.96479 -21.74222 -21.54799 -20.67032 -19.19894 -18.33935 -18.29739 -16.66658 -16.50841 -16.36884 -15.86266 -15.63766 -15.16405 -14.97051 -14.57549 -14.46097 -14.27156 -13.84665 -13.42370 -13.30858 -12.87817 -12.66836 -12.58968 -12.40985 -12.23378 -12.14064 -12.05940 -11.99418 -11.94671 -11.69540 -11.49439 -11.44250 -10.97224 -10.95338 -10.45575 -9.78810 -8.90343 -8.54914 -8.16374 -6.23679 0.41993 0.90313 1.38462 1.42368 1.50600 1.61637 2.27084 2.41769 3.13662 3.57225 3.69256 3.77755 3.98467 4.09284 4.17497 4.25330 4.41036 4.44143 4.50716 4.53603 4.54124 4.60454 4.77871 4.79425 4.83275 4.91740 4.99354 5.08010 5.09123 5.16628 5.21825 5.23708 5.31015 5.40009 5.46250 5.55184 5.64041 5.82433 5.90896 5.97530 6.33528 6.34229 6.85280 7.43345 8.90855 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.004166 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.048475 B = 6719.298959 C = 7274.606200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.025 3.975 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.044 3.956 10 C -0.110 4.110 11 C 0.109 3.891 12 N -0.551 5.551 13 C 0.582 3.418 14 S -0.742 6.742 15 N -0.668 5.668 16 C 0.141 3.859 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.126 4.126 21 C 0.103 3.897 22 C -0.106 4.106 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.408 0.592 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 -11.115 -12.809 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.148 4.148 11 C -0.014 4.014 12 N -0.257 5.257 13 C 0.218 3.782 14 S -0.615 6.615 15 N -0.301 5.301 16 C 0.037 3.963 17 C -0.168 4.168 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.164 4.164 21 C -0.021 4.021 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.249 0.751 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.191 -11.769 -12.595 18.003 hybrid contribution -0.115 2.256 0.157 2.265 sum -5.306 -9.513 -12.439 16.534 Atomic orbital electron populations 1.70014 1.06799 1.27321 1.50830 1.25551 0.95529 1.01730 0.94693 0.85793 0.78983 0.80343 0.78061 1.20251 1.20938 1.19846 1.21482 0.94037 0.92535 1.49362 0.93569 1.18637 0.93929 0.92066 0.92837 1.21830 0.98194 0.93680 1.01138 1.22239 0.97583 1.00385 0.81187 1.47440 1.43612 1.18820 1.15850 1.21816 0.86018 0.87754 0.82579 1.93272 1.42141 1.36929 1.89124 1.45445 1.42989 1.23955 1.17729 1.22176 0.96836 0.87978 0.89358 1.22667 0.97830 1.00844 0.95426 1.22471 0.96151 1.01204 0.95856 1.22358 0.95669 1.02330 0.95238 1.22462 0.95086 1.03892 0.94960 1.22184 0.92954 0.85054 1.01897 1.21714 0.98691 0.95000 0.99091 0.92862 0.96836 0.91242 0.93952 0.87102 0.89953 0.75053 0.88820 0.92454 0.92208 0.90626 0.90610 0.89576 0.91116 0.89256 0.90204 0.89465 0.88562 0.91224 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.83 12.15 21.45 0.26 -48.57 16 2 C 0.02 1.29 5.19 84.65 0.44 1.73 16 3 Si 0.94 41.85 29.55 68.60 2.03 43.88 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -28.03 8.48 25.60 0.22 -27.81 16 8 H 0.05 2.45 7.77 -2.91 -0.02 2.43 16 9 C 0.04 2.00 1.93 -11.51 -0.02 1.98 16 10 C -0.11 -4.37 5.30 30.67 0.16 -4.20 16 11 C 0.11 3.76 6.34 86.36 0.55 4.30 16 12 N -0.55 -17.60 2.98 -706.82 -2.11 -19.70 16 13 C 0.58 18.32 7.71 179.06 1.38 19.70 16 14 S -0.74 -28.68 26.46 -56.49 -1.49 -30.18 16 15 N -0.67 -15.67 4.94 -326.13 -1.61 -17.28 16 16 C 0.14 2.93 2.93 45.71 0.13 3.06 16 17 C -0.13 -2.73 6.42 31.67 0.20 -2.53 16 18 C -0.12 -1.73 6.91 31.88 0.22 -1.51 16 19 C -0.12 -1.36 6.83 31.67 0.22 -1.15 16 20 C -0.13 -1.69 6.57 31.32 0.21 -1.49 16 21 C 0.10 3.09 6.38 86.36 0.55 3.64 16 22 C -0.11 -4.24 5.21 30.67 0.16 -4.08 16 23 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 24 H 0.01 0.67 8.09 -2.38 -0.02 0.65 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.11 4.04 5.93 -3.87 -0.02 4.02 16 28 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16 29 H 0.41 7.66 5.81 -92.71 -0.54 7.12 16 30 H 0.09 2.41 6.93 -2.38 -0.02 2.40 16 31 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.93 7.62 -2.39 -0.02 0.91 16 39 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.10 2.19 5.66 -2.39 -0.01 2.17 16 41 H 0.07 3.11 6.87 -2.38 -0.02 3.10 16 42 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -62.68 334.18 1.94 -60.75 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.45 Total: 19.47 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 4.41 Total: -8.36 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -3.46 Total: -85.55 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -28.68 SS G_CDS: -1.49 Total: -30.18 kcal Total: -62.68 1.94 -60.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198536949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.433 kcal (2) G-P(sol) polarization free energy of solvation -62.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds