Wall clock time and date at job start Tue Mar 31 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99793 * 2 1 4 4 H 1.48496 * 109.47077 * 240.00442 * 3 2 1 5 5 H 1.48501 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46987 * 120.00500 * 3 2 1 7 7 C 1.37873 * 120.00213 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.85243 * 180.02562 * 7 2 1 9 9 C 1.53232 * 108.53605 * 128.62959 * 8 7 2 10 10 C 1.52963 * 109.40425 * 54.62947 * 9 8 7 11 11 H 1.09002 * 109.41116 * 56.50627 * 10 9 8 12 12 N 1.46494 * 109.41287 * 176.36388 * 10 9 8 13 13 C 1.34781 * 120.00064 * 205.00054 * 12 10 9 14 14 S 1.71207 * 119.99822 * 0.02562 * 13 12 10 15 15 N 1.34777 * 120.00084 * 180.02562 * 13 12 10 16 16 C 1.46503 * 119.99842 * 180.02562 * 15 13 12 17 17 C 1.54270 * 110.03054 * 272.90701 * 16 15 13 18 18 C 1.54964 * 104.15580 * 217.13595 * 17 16 15 19 19 C 1.54890 * 102.77757 * 37.89411 * 18 17 16 20 20 C 1.53868 * 110.02777 * 155.69156 * 16 15 13 21 21 C 1.52951 * 109.81716 * 296.40345 * 10 9 8 22 22 C 1.51276 * 120.84880 * 359.97438 * 7 2 1 23 23 H 0.96993 * 120.00124 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.62532 * 248.34746 * 8 7 2 25 25 H 1.09001 * 109.62320 * 8.91786 * 8 7 2 26 26 H 1.08997 * 109.48299 * 174.60876 * 9 8 7 27 27 H 1.08997 * 109.48604 * 294.63835 * 9 8 7 28 28 H 0.97000 * 119.99794 * 25.00463 * 12 10 9 29 29 H 0.97000 * 119.99774 * 0.02562 * 15 13 12 30 30 H 1.08998 * 110.01232 * 34.29677 * 16 15 13 31 31 H 1.09001 * 110.48827 * 335.78865 * 17 16 15 32 32 H 1.09002 * 110.48389 * 98.42868 * 17 16 15 33 33 H 1.08995 * 110.72096 * 279.57146 * 18 17 16 34 34 H 1.09000 * 110.75878 * 156.22419 * 18 17 16 35 35 H 1.09000 * 110.48351 * 203.40127 * 19 18 17 36 36 H 1.08997 * 110.48920 * 80.75847 * 19 18 17 37 37 H 1.09006 * 110.03347 * 238.56616 * 20 16 15 38 38 H 1.08993 * 110.03969 * 359.95107 * 20 16 15 39 39 H 1.08999 * 109.48657 * 303.61639 * 21 10 9 40 40 H 1.09003 * 109.48507 * 183.57661 * 21 10 9 41 41 H 1.08991 * 109.62630 * 351.08678 * 22 7 2 42 42 H 1.09003 * 109.62166 * 111.65577 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2164 0.0000 9 6 3.9903 -2.1313 1.1346 10 6 3.3396 -3.5073 0.9827 11 1 3.5740 -3.9122 -0.0017 12 7 3.8579 -4.4076 2.0156 13 6 3.8509 -5.7402 1.8134 14 16 3.2369 -6.3805 0.3491 15 7 4.3273 -6.5685 2.7639 16 6 4.3202 -8.0169 2.5438 17 6 2.9678 -8.6121 2.9872 18 6 3.3426 -9.9789 3.6140 19 6 4.6691 -9.6660 4.3500 20 6 5.4015 -8.6868 3.4095 21 6 1.8226 -3.3829 1.1332 22 6 1.2678 -2.5152 -0.0005 23 1 -0.4850 0.8400 0.0004 24 1 3.8779 -1.6000 -0.9543 25 1 3.8982 -0.2078 0.1600 26 1 5.0744 -2.2349 1.0898 27 1 3.7058 -1.6983 2.0935 28 1 4.2061 -4.0447 2.8451 29 1 4.6748 -6.2057 3.5936 30 1 4.4968 -8.2350 1.4905 31 1 2.4930 -7.9697 3.7288 32 1 2.3126 -8.7527 2.1274 33 1 3.4984 -10.7290 2.8388 34 1 2.5771 -10.3035 4.3189 35 1 5.2543 -10.5756 4.4845 36 1 4.4695 -9.1939 5.3119 37 1 6.1026 -9.2309 2.7765 38 1 5.9322 -7.9343 3.9928 39 1 1.5891 -2.9204 2.0922 40 1 1.3703 -4.3736 1.0876 41 1 0.2038 -2.3409 0.1590 42 1 1.4200 -3.0192 -0.9550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198567305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:00 Heat of formation + Delta-G solvation = -32.363371 kcal Electronic energy + Delta-G solvation = -20295.871197 eV Core-core repulsion = 17399.553477 eV Total energy + Delta-G solvation = -2896.317720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69316 -39.41587 -37.36265 -35.10709 -33.36464 -31.47828 -29.74247 -29.54690 -28.00455 -24.90383 -24.02563 -23.20443 -21.73784 -21.49754 -21.30542 -19.34745 -18.20079 -17.91030 -16.60671 -16.43184 -16.32305 -16.09179 -15.64279 -15.07596 -14.88749 -14.46317 -14.26540 -14.06718 -13.94772 -13.39907 -13.05150 -12.76953 -12.63512 -12.50157 -12.31075 -12.13009 -12.05033 -12.01011 -11.94556 -11.82765 -11.64113 -11.49919 -11.45510 -10.90925 -10.65330 -10.53912 -9.94253 -8.92977 -8.47926 -8.14846 -6.11073 0.44787 0.99318 1.41103 1.44015 1.51587 1.60719 2.42091 2.66178 3.13298 3.58663 3.69474 3.95603 3.99887 4.17632 4.43298 4.48958 4.52954 4.54665 4.60217 4.69057 4.74736 4.78620 4.89710 4.94985 4.98574 5.01393 5.08914 5.10323 5.18829 5.23489 5.26619 5.31546 5.46225 5.48433 5.57234 5.63037 5.69141 5.76670 5.83108 6.04923 6.35002 6.51886 6.95370 7.47154 8.96464 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.039334 B = 0.003650 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.683130 B = 7668.389743 C = 7902.880828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.502 4.502 8 C -0.010 4.010 9 C -0.105 4.105 10 C 0.168 3.832 11 H 0.084 0.916 12 N -0.660 5.660 13 C 0.586 3.414 14 S -0.743 6.743 15 N -0.661 5.661 16 C 0.139 3.861 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.095 4.095 22 C 0.014 3.986 23 H 0.263 0.737 24 H 0.021 0.979 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.413 0.587 29 H 0.414 0.586 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.022 0.978 42 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.063 -14.848 14.039 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.225 1.225 6 H -0.180 1.180 7 C -0.521 4.521 8 C -0.048 4.048 9 C -0.143 4.143 10 C 0.064 3.936 11 H 0.102 0.898 12 N -0.287 5.287 13 C 0.221 3.779 14 S -0.619 6.619 15 N -0.292 5.292 16 C 0.034 3.966 17 C -0.169 4.169 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.135 4.135 22 C -0.024 4.024 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.252 0.748 29 H 0.254 0.746 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.040 0.960 42 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 13.502 -15.181 13.008 24.124 hybrid contribution 0.010 1.662 0.872 1.877 sum 13.513 -13.519 13.881 23.622 Atomic orbital electron populations 1.69998 1.07971 1.27596 1.51812 1.25694 0.95355 1.02045 0.94723 0.85725 0.78273 0.78799 0.79786 1.19206 1.22473 1.17999 1.20636 0.91402 0.91476 1.48559 1.19580 0.94369 0.95834 0.95038 1.21761 0.98851 0.93103 1.00629 1.21104 0.93466 0.88416 0.90592 0.89815 1.45189 1.59293 1.02714 1.21549 1.21697 0.81320 0.84030 0.90863 1.93644 1.68348 1.80602 1.19326 1.45197 1.59649 1.07324 1.17063 1.22156 0.96713 0.75379 1.02307 1.22685 0.96406 0.97641 1.00168 1.22489 0.98044 0.95593 0.99717 1.22351 0.95575 0.99433 0.98105 1.22436 0.96579 0.99164 0.97954 1.21652 0.94658 0.97851 0.99300 1.19200 0.96830 0.93533 0.92798 0.92819 0.96023 0.94335 0.90709 0.91617 0.74756 0.74583 0.89123 0.91907 0.92819 0.91046 0.90595 0.89813 0.90680 0.89682 0.89551 0.93869 0.94396 0.95954 0.99111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 12.73 21.45 0.27 -55.37 16 2 C 0.02 1.09 5.46 84.65 0.46 1.55 16 3 Si 0.95 42.47 26.80 68.60 1.84 44.31 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.50 -26.33 5.52 -16.17 -0.09 -26.42 16 8 C -0.01 -0.44 5.59 30.11 0.17 -0.27 16 9 C -0.10 -3.60 5.40 30.66 0.17 -3.43 16 10 C 0.17 6.13 2.12 44.96 0.10 6.22 16 11 H 0.08 3.57 6.82 -2.39 -0.02 3.55 16 12 N -0.66 -17.68 5.08 -329.71 -1.67 -19.35 16 13 C 0.59 16.73 7.94 179.05 1.42 18.15 16 14 S -0.74 -30.08 26.04 -56.49 -1.47 -31.55 16 15 N -0.66 -12.43 5.05 -326.12 -1.65 -14.07 16 16 C 0.14 2.59 2.96 45.71 0.14 2.72 16 17 C -0.13 -2.55 6.51 31.70 0.21 -2.34 16 18 C -0.12 -1.60 6.91 31.91 0.22 -1.38 16 19 C -0.12 -1.08 6.83 31.67 0.22 -0.86 16 20 C -0.12 -1.32 6.57 31.32 0.21 -1.12 16 21 C -0.10 -4.18 5.43 30.64 0.17 -4.02 16 22 C 0.01 0.77 5.97 30.09 0.18 0.95 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.04 1.58 5.17 -2.39 -0.01 1.56 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.41 7.63 8.61 -92.71 -0.80 6.83 16 29 H 0.41 4.59 8.32 -92.71 -0.77 3.82 16 30 H 0.09 2.28 6.82 -2.39 -0.02 2.27 16 31 H 0.06 1.26 8.05 -2.39 -0.02 1.24 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.09 0.65 7.61 -2.39 -0.02 0.63 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.73 7.47 -2.39 -0.02 1.71 16 41 H 0.02 1.31 7.07 -2.39 -0.02 1.29 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 Total: -1.00 -71.50 334.04 0.33 -71.17 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -0.55 Total: 15.10 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 3.55 Total: -10.23 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -3.05 Total: -88.79 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.84 Total: 44.31 kcal Atomic # 16 Polarization: -30.08 SS G_CDS: -1.47 Total: -31.55 kcal Total: -71.50 0.33 -71.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198567305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.807 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds