Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99655 * 2 1 4 4 H 1.48508 * 109.46778 * 174.65724 * 3 2 1 5 5 H 1.48498 * 109.47545 * 294.65809 * 3 2 1 6 6 H 1.48504 * 109.47246 * 54.66167 * 3 2 1 7 7 C 1.37878 * 120.00078 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84824 * 348.87636 * 7 2 1 9 9 C 1.53230 * 108.53764 * 231.32601 * 8 7 2 10 10 C 1.52958 * 109.40534 * 305.37720 * 9 8 7 11 11 H 1.09003 * 109.41013 * 303.48916 * 10 9 8 12 12 N 1.46501 * 109.41171 * 183.70358 * 10 9 8 13 13 C 1.34774 * 120.00025 * 154.99882 * 12 10 9 14 14 S 1.71202 * 120.00025 * 359.97438 * 13 12 10 15 15 N 1.34778 * 120.00187 * 179.97438 * 13 12 10 16 16 C 1.46500 * 119.99826 * 180.02562 * 15 13 12 17 17 C 1.54267 * 110.03125 * 272.16840 * 16 15 13 18 18 C 1.54889 * 104.19725 * 217.11036 * 17 16 15 19 19 C 1.54886 * 102.75041 * 37.94191 * 18 17 16 20 20 C 1.53876 * 110.03070 * 155.00657 * 16 15 13 21 21 C 1.52951 * 109.81654 * 63.59727 * 10 9 8 22 22 C 1.51266 * 120.84834 * 168.86110 * 7 2 1 23 23 H 0.96997 * 120.00533 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.62968 * 351.04609 * 8 7 2 25 25 H 1.09001 * 109.62316 * 111.42268 * 8 7 2 26 26 H 1.09003 * 109.47889 * 65.35518 * 9 8 7 27 27 H 1.08997 * 109.47970 * 185.38104 * 9 8 7 28 28 H 0.96996 * 120.00027 * 334.99650 * 12 10 9 29 29 H 0.96994 * 119.99643 * 0.02562 * 15 13 12 30 30 H 1.08994 * 110.01868 * 33.60938 * 16 15 13 31 31 H 1.09004 * 110.49014 * 335.78627 * 17 16 15 32 32 H 1.09000 * 110.48932 * 98.42568 * 17 16 15 33 33 H 1.08998 * 110.75476 * 279.62365 * 18 17 16 34 34 H 1.08995 * 110.75888 * 156.26006 * 18 17 16 35 35 H 1.09001 * 110.48672 * 203.38317 * 19 18 17 36 36 H 1.09001 * 110.48863 * 80.73443 * 19 18 17 37 37 H 1.08993 * 110.02815 * 238.56642 * 20 16 15 38 38 H 1.09000 * 110.02939 * 359.94972 * 20 16 15 39 39 H 1.09005 * 109.48361 * 176.41906 * 21 10 9 40 40 H 1.09002 * 109.48651 * 56.38227 * 21 10 9 41 41 H 1.09001 * 109.62129 * 248.38424 * 22 7 2 42 42 H 1.08999 * 109.62393 * 8.95484 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7038 1.3495 0.1304 5 1 1.9907 2.3386 -1.2724 6 1 1.7952 2.4514 1.1421 7 6 2.0046 -1.1941 -0.0005 8 6 1.2888 -2.5030 0.2494 9 6 2.0331 -3.2622 1.3529 10 6 3.5044 -3.4128 0.9626 11 1 3.5736 -3.9124 -0.0037 12 7 4.1970 -4.2145 1.9745 13 6 5.3095 -4.9002 1.6454 14 16 5.9132 -4.8349 0.0446 15 7 5.9470 -5.6374 2.5764 16 6 7.1567 -6.3823 2.2186 17 6 6.7785 -7.7794 1.6851 18 6 7.8885 -8.7093 2.2348 19 6 8.1438 -8.1366 3.6511 20 6 8.0248 -6.6094 3.4687 21 6 4.1600 -2.0340 0.8702 22 6 3.4959 -1.2285 -0.2514 23 1 -0.4851 0.8400 -0.0004 24 1 0.2651 -2.3057 0.5673 25 1 1.2803 -3.0961 -0.6651 26 1 1.9601 -2.7077 2.2884 27 1 1.5875 -4.2489 1.4793 28 1 3.8548 -4.2518 2.8814 29 1 5.6048 -5.6746 3.4832 30 1 7.7229 -5.8348 1.4652 31 1 5.8034 -8.0825 2.0666 32 1 6.7812 -7.7852 0.5951 33 1 8.7878 -8.6411 1.6227 34 1 7.5364 -9.7392 2.2923 35 1 9.1430 -8.4029 3.9958 36 1 7.3893 -8.4972 4.3502 37 1 9.0126 -6.1728 3.3215 38 1 7.5464 -6.1646 4.3413 39 1 5.2222 -2.1502 0.6545 40 1 4.0367 -1.5085 1.8172 41 1 3.6946 -1.7051 -1.2114 42 1 3.8900 -0.2123 -0.2554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198567308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -10.981070 kcal Electronic energy + Delta-G solvation = -20283.086338 eV Core-core repulsion = 17387.695825 eV Total energy + Delta-G solvation = -2895.390514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.59281 -38.17827 -36.00867 -33.67321 -31.61039 -29.73415 -29.02859 -28.20059 -26.71586 -23.67088 -22.12376 -21.54989 -20.93475 -20.69443 -19.68718 -18.10983 -17.04742 -16.08236 -15.62984 -15.41403 -14.76081 -14.65995 -14.43421 -13.82944 -13.64693 -13.19830 -12.76698 -12.43548 -12.30328 -12.12119 -11.72580 -11.48533 -11.42558 -11.31182 -11.05799 -10.97311 -10.89988 -10.80345 -10.75538 -10.58081 -10.17150 -10.03592 -9.39430 -9.12660 -8.88698 -8.50148 -8.39032 -7.45009 -6.95911 -6.12146 -4.00285 1.71933 2.28250 2.86185 3.27383 3.37643 3.39478 3.76305 4.26335 4.34963 4.39600 4.59065 5.11932 5.15192 5.18029 5.26290 5.30680 5.36810 5.48296 5.57576 5.61325 5.77402 5.80246 5.88294 6.02685 6.08948 6.14397 6.24305 6.43214 6.50706 6.56337 6.75685 6.89686 6.95682 6.98370 7.19354 7.30663 7.50026 7.56078 7.62311 7.75845 7.80984 8.37339 8.95310 9.54860 10.97413 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038397 B = 0.003662 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.046519 B = 7643.622182 C = 7797.276872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.489 4.489 8 C 0.017 3.983 9 C -0.115 4.115 10 C 0.151 3.849 11 H 0.108 0.892 12 N -0.673 5.673 13 C 0.563 3.437 14 S -0.653 6.653 15 N -0.692 5.692 16 C 0.143 3.857 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.020 4.020 23 H 0.263 0.737 24 H 0.057 0.943 25 H 0.010 0.990 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.390 0.610 29 H 0.391 0.609 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.025 0.975 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.694 -14.066 10.537 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.508 4.508 8 C -0.021 4.021 9 C -0.154 4.154 10 C 0.049 3.951 11 H 0.126 0.874 12 N -0.298 5.298 13 C 0.202 3.798 14 S -0.527 6.527 15 N -0.324 5.324 16 C 0.038 3.962 17 C -0.169 4.169 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.171 4.171 21 C -0.150 4.150 22 C -0.058 4.058 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.225 0.775 29 H 0.227 0.773 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.928 -13.860 9.350 21.134 hybrid contribution -0.339 0.889 1.915 2.139 sum 12.589 -12.970 11.265 21.298 Atomic orbital electron populations 1.69899 1.06248 1.26885 1.49478 1.24839 0.94600 0.98625 0.94539 0.86760 0.81257 0.83639 0.77783 1.17941 1.20847 1.21372 1.20067 0.91211 0.91751 1.47739 1.19291 0.97061 0.93563 0.92189 1.22006 0.92862 0.98609 1.01947 1.21667 0.91247 0.91335 0.90864 0.87437 1.45804 1.23748 1.45358 1.14909 1.22328 0.83367 0.80124 0.93993 1.93347 1.74045 1.83427 1.01924 1.45223 1.28278 1.47750 1.11128 1.22044 0.83900 0.92632 0.97647 1.22740 0.98495 0.93271 1.02391 1.22487 0.99021 0.98859 0.95856 1.22358 1.01680 0.94542 0.97577 1.22469 1.00440 0.97071 0.97107 1.21874 0.98549 0.93920 1.00612 1.19888 0.95417 0.96351 0.94103 0.92688 0.92404 0.97135 0.92970 0.94627 0.77512 0.77256 0.86421 0.91651 0.89771 0.91023 0.91403 0.91391 0.91689 0.90349 0.91438 0.93148 0.93830 0.95656 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 12.82 55.43 0.71 -24.55 16 2 C 0.08 2.07 5.44 -17.82 -0.10 1.98 16 3 Si 0.88 20.77 27.95 -169.99 -4.75 16.02 16 4 H -0.25 -5.81 5.58 56.52 0.32 -5.50 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -12.70 5.48 -98.92 -0.54 -13.24 16 8 C 0.02 0.41 5.93 -27.49 -0.16 0.25 16 9 C -0.12 -2.27 5.40 -26.63 -0.14 -2.41 16 10 C 0.15 2.85 2.12 -67.98 -0.14 2.71 16 11 H 0.11 2.31 6.82 -51.93 -0.35 1.96 16 12 N -0.67 -9.92 5.08 -55.56 -0.28 -10.20 16 13 C 0.56 8.41 7.94 -86.92 -0.69 7.72 16 14 S -0.65 -12.67 26.04 -107.50 -2.80 -15.47 16 15 N -0.69 -7.39 5.04 -54.43 -0.27 -7.66 16 16 C 0.14 1.43 2.97 -66.81 -0.20 1.23 16 17 C -0.13 -1.26 6.53 -25.07 -0.16 -1.43 16 18 C -0.12 -0.91 6.91 -24.74 -0.17 -1.08 16 19 C -0.12 -0.78 6.83 -25.07 -0.17 -0.95 16 20 C -0.13 -0.96 6.57 -25.61 -0.17 -1.12 16 21 C -0.11 -2.29 5.44 -26.64 -0.14 -2.43 16 22 C -0.02 -0.46 5.65 -27.49 -0.16 -0.62 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.06 1.52 7.19 -51.93 -0.37 1.15 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.39 4.52 8.61 -40.82 -0.35 4.17 16 29 H 0.39 3.05 8.33 -40.82 -0.34 2.71 16 30 H 0.12 1.49 6.79 -51.93 -0.35 1.14 16 31 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.43 7.62 -51.93 -0.40 0.04 16 39 H 0.05 1.06 7.47 -51.93 -0.39 0.67 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.99 4.36 -51.93 -0.23 0.76 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -30.45 333.05 -12.40 -42.86 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.07 Total: 3.40 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.95 Total: -9.40 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.15 Total: -42.42 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.75 Total: 16.02 kcal Atomic # 16 Polarization: -12.67 SS G_CDS: -2.80 Total: -15.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.45 -12.40 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198567308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.874 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds