Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99655 * 2 1 4 4 H 1.48508 * 109.46778 * 174.65724 * 3 2 1 5 5 H 1.48498 * 109.47545 * 294.65809 * 3 2 1 6 6 H 1.48504 * 109.47246 * 54.66167 * 3 2 1 7 7 C 1.37878 * 120.00078 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84824 * 348.87636 * 7 2 1 9 9 C 1.53230 * 108.53764 * 231.32601 * 8 7 2 10 10 C 1.52958 * 109.40534 * 305.37720 * 9 8 7 11 11 H 1.09003 * 109.41013 * 303.48916 * 10 9 8 12 12 N 1.46501 * 109.41171 * 183.70358 * 10 9 8 13 13 C 1.34774 * 120.00025 * 154.99882 * 12 10 9 14 14 S 1.71202 * 120.00025 * 359.97438 * 13 12 10 15 15 N 1.34778 * 120.00187 * 179.97438 * 13 12 10 16 16 C 1.46500 * 119.99826 * 180.02562 * 15 13 12 17 17 C 1.54267 * 110.03125 * 272.16840 * 16 15 13 18 18 C 1.54889 * 104.19725 * 217.11036 * 17 16 15 19 19 C 1.54886 * 102.75041 * 37.94191 * 18 17 16 20 20 C 1.53876 * 110.03070 * 155.00657 * 16 15 13 21 21 C 1.52951 * 109.81654 * 63.59727 * 10 9 8 22 22 C 1.51266 * 120.84834 * 168.86110 * 7 2 1 23 23 H 0.96997 * 120.00533 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.62968 * 351.04609 * 8 7 2 25 25 H 1.09001 * 109.62316 * 111.42268 * 8 7 2 26 26 H 1.09003 * 109.47889 * 65.35518 * 9 8 7 27 27 H 1.08997 * 109.47970 * 185.38104 * 9 8 7 28 28 H 0.96996 * 120.00027 * 334.99650 * 12 10 9 29 29 H 0.96994 * 119.99643 * 0.02562 * 15 13 12 30 30 H 1.08994 * 110.01868 * 33.60938 * 16 15 13 31 31 H 1.09004 * 110.49014 * 335.78627 * 17 16 15 32 32 H 1.09000 * 110.48932 * 98.42568 * 17 16 15 33 33 H 1.08998 * 110.75476 * 279.62365 * 18 17 16 34 34 H 1.08995 * 110.75888 * 156.26006 * 18 17 16 35 35 H 1.09001 * 110.48672 * 203.38317 * 19 18 17 36 36 H 1.09001 * 110.48863 * 80.73443 * 19 18 17 37 37 H 1.08993 * 110.02815 * 238.56642 * 20 16 15 38 38 H 1.09000 * 110.02939 * 359.94972 * 20 16 15 39 39 H 1.09005 * 109.48361 * 176.41906 * 21 10 9 40 40 H 1.09002 * 109.48651 * 56.38227 * 21 10 9 41 41 H 1.09001 * 109.62129 * 248.38424 * 22 7 2 42 42 H 1.08999 * 109.62393 * 8.95484 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7038 1.3495 0.1304 5 1 1.9907 2.3386 -1.2724 6 1 1.7952 2.4514 1.1421 7 6 2.0046 -1.1941 -0.0005 8 6 1.2888 -2.5030 0.2494 9 6 2.0331 -3.2622 1.3529 10 6 3.5044 -3.4128 0.9626 11 1 3.5736 -3.9124 -0.0037 12 7 4.1970 -4.2145 1.9745 13 6 5.3095 -4.9002 1.6454 14 16 5.9132 -4.8349 0.0446 15 7 5.9470 -5.6374 2.5764 16 6 7.1567 -6.3823 2.2186 17 6 6.7785 -7.7794 1.6851 18 6 7.8885 -8.7093 2.2348 19 6 8.1438 -8.1366 3.6511 20 6 8.0248 -6.6094 3.4687 21 6 4.1600 -2.0340 0.8702 22 6 3.4959 -1.2285 -0.2514 23 1 -0.4851 0.8400 -0.0004 24 1 0.2651 -2.3057 0.5673 25 1 1.2803 -3.0961 -0.6651 26 1 1.9601 -2.7077 2.2884 27 1 1.5875 -4.2489 1.4793 28 1 3.8548 -4.2518 2.8814 29 1 5.6048 -5.6746 3.4832 30 1 7.7229 -5.8348 1.4652 31 1 5.8034 -8.0825 2.0666 32 1 6.7812 -7.7852 0.5951 33 1 8.7878 -8.6411 1.6227 34 1 7.5364 -9.7392 2.2923 35 1 9.1430 -8.4029 3.9958 36 1 7.3893 -8.4972 4.3502 37 1 9.0126 -6.1728 3.3215 38 1 7.5464 -6.1646 4.3413 39 1 5.2222 -2.1502 0.6545 40 1 4.0367 -1.5085 1.8172 41 1 3.6946 -1.7051 -1.2114 42 1 3.8900 -0.2123 -0.2554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198567308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -28.480318 kcal Electronic energy + Delta-G solvation = -20283.845163 eV Core-core repulsion = 17387.695825 eV Total energy + Delta-G solvation = -2896.149338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68938 -39.41300 -37.35902 -35.10697 -33.35389 -31.52820 -29.71979 -29.50318 -27.99827 -25.00409 -23.82566 -23.30312 -21.71204 -21.50494 -21.30441 -19.37866 -18.19345 -17.89319 -16.61758 -16.41966 -16.36807 -16.05811 -15.67511 -15.11507 -14.78788 -14.45336 -14.26409 -14.11957 -14.00901 -13.63295 -12.89392 -12.77818 -12.68985 -12.58664 -12.23048 -12.18457 -12.02625 -11.95075 -11.88557 -11.82197 -11.69623 -11.45899 -11.23279 -10.89715 -10.64661 -10.45871 -9.90962 -8.92900 -8.47560 -8.17691 -6.09467 0.45671 0.99274 1.38597 1.44290 1.52436 1.60892 2.42934 2.66170 3.10773 3.58879 3.69800 3.98408 4.00473 4.16500 4.43684 4.49673 4.53461 4.55215 4.60334 4.70275 4.74284 4.79135 4.91142 4.96381 4.98306 5.04675 5.09222 5.10823 5.23176 5.23873 5.31897 5.33527 5.46493 5.48981 5.59092 5.60613 5.67799 5.80060 5.82985 6.04448 6.35747 6.51224 6.94802 7.48325 8.93009 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038397 B = 0.003662 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.046519 B = 7643.622182 C = 7797.276872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.241 1.241 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.498 4.498 8 C 0.013 3.987 9 C -0.101 4.101 10 C 0.169 3.831 11 H 0.082 0.918 12 N -0.661 5.661 13 C 0.585 3.415 14 S -0.741 6.741 15 N -0.662 5.662 16 C 0.138 3.862 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.101 4.101 22 C -0.020 4.020 23 H 0.263 0.737 24 H 0.032 0.968 25 H -0.005 1.005 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.412 0.588 29 H 0.414 0.586 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.011 0.989 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.265 -15.107 13.571 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.165 1.165 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.517 4.517 8 C -0.025 4.025 9 C -0.140 4.140 10 C 0.065 3.935 11 H 0.100 0.900 12 N -0.288 5.288 13 C 0.220 3.780 14 S -0.617 6.617 15 N -0.293 5.293 16 C 0.034 3.966 17 C -0.167 4.167 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.140 4.140 22 C -0.058 4.058 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.013 0.987 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.251 0.749 29 H 0.254 0.746 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.532 -14.943 12.455 24.282 hybrid contribution -0.824 1.104 0.975 1.688 sum 13.708 -13.839 13.431 23.660 Atomic orbital electron populations 1.70013 1.07643 1.27489 1.51499 1.25553 0.95207 1.01683 0.94800 0.85928 0.80884 0.80101 0.77489 1.16481 1.21262 1.21027 1.20584 0.92390 0.92342 1.46410 1.19239 0.96385 0.93703 0.93217 1.21741 0.92716 0.99301 1.00197 1.21104 0.90976 0.90643 0.90825 0.90043 1.45222 1.23477 1.44881 1.15214 1.21713 0.83104 0.80308 0.92875 1.93598 1.76051 1.85742 1.06269 1.45201 1.27463 1.45357 1.11246 1.22164 0.83476 0.92137 0.98865 1.22665 0.99575 0.93745 1.00715 1.22475 0.97946 0.98831 0.96584 1.22350 1.02943 0.93417 0.96759 1.22445 0.99947 0.98122 0.95795 1.21710 0.98112 0.94581 0.99596 1.19845 0.94409 0.96842 0.94686 0.92784 0.94955 0.98669 0.92026 0.92172 0.74855 0.74636 0.89174 0.91621 0.92615 0.91121 0.90428 0.89950 0.90607 0.89905 0.89727 0.93347 0.92911 0.97096 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.81 12.82 21.45 0.28 -53.54 16 2 C 0.03 1.43 5.44 84.65 0.46 1.89 16 3 Si 0.93 42.67 27.95 68.60 1.92 44.58 16 4 H -0.24 -10.39 5.58 99.48 0.56 -9.84 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.50 -26.04 5.48 -16.17 -0.09 -26.13 16 8 C 0.01 0.62 5.93 30.11 0.18 0.80 16 9 C -0.10 -3.80 5.40 30.66 0.17 -3.64 16 10 C 0.17 6.14 2.12 44.96 0.10 6.23 16 11 H 0.08 3.50 6.82 -2.39 -0.02 3.49 16 12 N -0.66 -17.68 5.08 -329.71 -1.67 -19.35 16 13 C 0.59 16.40 7.94 179.05 1.42 17.83 16 14 S -0.74 -29.14 26.04 -56.49 -1.47 -30.62 16 15 N -0.66 -12.22 5.04 -326.13 -1.64 -13.86 16 16 C 0.14 2.51 2.97 45.72 0.14 2.65 16 17 C -0.13 -2.32 6.53 31.67 0.21 -2.12 16 18 C -0.12 -1.48 6.91 31.88 0.22 -1.26 16 19 C -0.12 -1.04 6.83 31.67 0.22 -0.82 16 20 C -0.12 -1.36 6.57 31.32 0.21 -1.16 16 21 C -0.10 -4.05 5.44 30.66 0.17 -3.89 16 22 C -0.02 -0.93 5.65 30.10 0.17 -0.76 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.03 1.73 7.19 -2.39 -0.02 1.71 16 25 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.41 7.81 8.61 -92.71 -0.80 7.01 16 29 H 0.41 4.56 8.33 -92.71 -0.77 3.79 16 30 H 0.09 2.26 6.79 -2.39 -0.02 2.24 16 31 H 0.07 1.18 8.05 -2.38 -0.02 1.16 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.68 7.62 -2.39 -0.02 0.66 16 39 H 0.05 1.98 7.47 -2.38 -0.02 1.96 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.04 1.93 4.36 -2.39 -0.01 1.92 16 Total: -1.00 -68.86 333.05 0.26 -68.61 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.70 Total: 14.56 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 3.56 Total: -10.38 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.04 Total: -86.76 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.92 Total: 44.58 kcal Atomic # 16 Polarization: -29.14 SS G_CDS: -1.47 Total: -30.62 kcal Total: -68.86 0.26 -68.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198567308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.127 kcal (2) G-P(sol) polarization free energy of solvation -68.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds