Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48500 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47038 * 300.00127 * 3 2 1 6 6 H 1.48491 * 109.47115 * 60.00260 * 3 2 1 7 7 C 1.37874 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00720 * 174.84310 * 7 2 1 9 9 C 1.50703 * 119.99980 * 354.84059 * 7 2 1 10 10 N 1.46503 * 110.01488 * 64.60793 * 9 7 2 11 11 C 1.34774 * 120.00333 * 63.92053 * 10 9 7 12 12 S 1.71198 * 119.99806 * 354.62739 * 11 10 9 13 13 N 1.34768 * 120.00202 * 174.63185 * 11 10 9 14 14 C 1.46499 * 120.00303 * 180.02562 * 13 11 10 15 15 C 1.54968 * 110.92560 * 91.53537 * 14 13 11 16 16 C 1.54270 * 104.15719 * 156.29653 * 15 14 13 17 17 C 1.53872 * 106.64186 * 336.45063 * 16 15 14 18 18 C 1.54265 * 106.60151 * 359.97182 * 17 16 15 19 19 C 1.54269 * 110.03339 * 185.99457 * 9 7 2 20 20 C 1.54969 * 104.15607 * 95.75545 * 19 9 7 21 21 C 1.54892 * 102.77719 * 37.89038 * 20 19 9 22 22 C 1.53871 * 110.03217 * 303.21261 * 9 7 2 23 23 H 0.96996 * 119.99761 * 4.99611 * 1 2 3 24 24 H 0.97000 * 119.99775 * 243.92166 * 10 9 7 25 25 H 0.97006 * 119.99838 * 359.97438 * 13 11 10 26 26 H 1.09000 * 110.66919 * 328.22926 * 14 13 11 27 27 H 1.08996 * 110.47200 * 37.64497 * 15 14 13 28 28 H 1.08998 * 110.52885 * 274.97644 * 15 14 13 29 29 H 1.09001 * 110.03074 * 217.13435 * 16 15 14 30 30 H 1.09004 * 110.02737 * 95.75515 * 16 15 14 31 31 H 1.08997 * 110.03260 * 119.26121 * 17 16 15 32 32 H 1.09007 * 110.03007 * 240.64182 * 17 16 15 33 33 H 1.08996 * 110.48617 * 142.29401 * 18 17 16 34 34 H 1.08995 * 110.48669 * 264.80225 * 18 17 16 35 35 H 1.09000 * 110.48826 * 214.40022 * 19 9 7 36 36 H 1.09000 * 110.48816 * 337.04679 * 19 9 7 37 37 H 1.08999 * 110.71786 * 279.57197 * 20 19 9 38 38 H 1.09001 * 110.92009 * 156.29260 * 20 19 9 39 39 H 1.09000 * 110.48306 * 203.40430 * 21 20 19 40 40 H 1.08999 * 110.48501 * 80.75993 * 21 20 19 41 41 H 1.08997 * 110.03611 * 359.95448 * 22 9 7 42 42 H 1.09007 * 110.02995 * 121.37822 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1960 -0.0846 9 6 1.2555 -2.4966 0.1162 10 7 0.3993 -2.6896 -1.0568 11 6 0.9511 -2.8255 -2.2789 12 16 2.6405 -2.6357 -2.4812 13 7 0.1730 -3.1107 -3.3416 14 6 0.7728 -3.2590 -4.6699 15 6 1.1517 -4.7364 -4.9443 16 6 1.1713 -4.8413 -6.4834 17 6 0.2701 -3.7124 -7.0135 18 6 -0.2671 -2.9604 -5.7783 19 6 2.2505 -3.6687 0.2428 20 6 2.3606 -3.9092 1.7698 21 6 0.9093 -3.6772 2.2586 22 6 0.4034 -2.5016 1.3975 23 1 -0.4849 0.8368 -0.0732 24 1 -0.5647 -2.7195 -0.9539 25 1 -0.7842 -3.2186 -3.2269 26 1 1.6439 -2.6119 -4.7732 27 1 0.4008 -5.4065 -4.5258 28 1 2.1362 -4.9611 -4.5340 29 1 0.7805 -5.8094 -6.7966 30 1 2.1884 -4.7120 -6.8534 31 1 0.8499 -3.0349 -7.6402 32 1 -0.5577 -4.1327 -7.5848 33 1 -0.3175 -1.8896 -5.9757 34 1 -1.2484 -3.3420 -5.4963 35 1 1.8601 -4.5560 -0.2557 36 1 3.2201 -3.3926 -0.1716 37 1 3.0413 -3.1900 2.2253 38 1 2.6809 -4.9294 1.9810 39 1 0.9010 -3.4077 3.3148 40 1 0.3020 -4.5657 2.0859 41 1 0.5322 -1.5623 1.9352 42 1 -0.6473 -2.6475 1.1465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198588485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = -2.675156 kcal Electronic energy + Delta-G solvation = -21125.781163 eV Core-core repulsion = 18230.750821 eV Total energy + Delta-G solvation = -2895.030342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.96123 -38.04318 -35.65489 -32.89022 -31.96303 -28.64609 -28.00158 -27.74812 -26.51899 -24.09643 -22.57407 -20.80649 -20.19693 -19.78593 -19.08880 -17.27356 -16.99031 -16.01269 -15.40884 -14.88580 -14.53959 -14.10585 -14.01040 -13.72641 -13.29555 -13.04197 -12.76561 -12.39220 -12.04836 -11.55221 -11.22530 -11.18885 -11.03881 -10.94094 -10.68873 -10.59879 -10.52421 -10.37598 -10.32509 -10.17878 -10.06782 -9.90764 -9.69398 -9.32616 -9.19766 -8.46125 -7.91720 -6.48777 -6.06454 -5.99313 -3.93423 2.65599 3.17720 3.34624 3.43536 3.53338 3.72501 4.50200 4.59333 4.71135 4.75531 4.95629 5.37357 5.44539 5.55676 5.62746 5.64779 5.67055 5.72892 5.73961 5.77977 5.90289 5.95735 6.10751 6.28746 6.38822 6.42695 6.45356 6.49227 6.63478 6.67365 6.72677 6.80050 6.87135 7.12197 7.19888 7.36208 7.42338 7.71681 7.98241 8.13970 8.33680 8.61811 9.06780 9.61318 11.02262 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.006284 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.304825 B = 4454.478103 C = 5248.455252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.454 4.454 8 H 0.076 0.924 9 C 0.288 3.712 10 N -0.631 5.631 11 C 0.571 3.429 12 S -0.670 6.670 13 N -0.705 5.705 14 C 0.149 3.851 15 C -0.131 4.131 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.133 4.133 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.093 4.093 23 H 0.257 0.743 24 H 0.375 0.625 25 H 0.385 0.615 26 H 0.120 0.880 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -8.660 -6.651 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.207 3.793 10 N -0.252 5.252 11 C 0.209 3.791 12 S -0.544 6.544 13 N -0.338 5.338 14 C 0.043 3.957 15 C -0.170 4.170 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.171 4.171 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.165 4.165 22 C -0.132 4.132 23 H 0.066 0.934 24 H 0.210 0.790 25 H 0.220 0.780 26 H 0.138 0.862 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.106 -8.384 -6.621 11.126 hybrid contribution -1.742 0.964 0.026 1.991 sum -4.848 -7.420 -6.595 11.048 Atomic orbital electron populations 1.69909 1.05913 1.26686 1.51339 1.24942 0.94820 0.99223 0.95001 0.86453 0.80828 0.83469 0.76923 1.19360 1.21520 1.21522 1.21364 0.94290 0.88080 1.45674 0.90633 1.19144 0.86203 0.94406 0.79533 1.46590 1.09535 1.63406 1.05689 1.21841 0.95234 0.80344 0.81684 1.92646 0.94171 1.75683 1.91858 1.44879 1.09067 1.72790 1.07100 1.22180 0.97156 0.97527 0.78835 1.22700 1.02766 0.96450 0.95064 1.22062 0.99991 0.98184 0.95720 1.22030 0.99133 0.97478 0.97080 1.22630 0.98469 1.00799 0.95240 1.22776 1.02491 0.96305 0.93389 1.22464 0.96362 0.99380 0.97695 1.22419 0.96867 0.98355 0.98886 1.22171 0.97134 0.97692 0.96165 0.93373 0.78991 0.78030 0.86220 0.92245 0.90138 0.92129 0.91535 0.91577 0.91950 0.91147 0.91734 0.94527 0.88882 0.91540 0.93460 0.92995 0.93482 0.90146 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.62 11.80 55.43 0.65 -22.96 16 2 C 0.06 1.63 4.89 -17.82 -0.09 1.54 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.45 -11.84 5.90 -34.44 -0.20 -12.05 16 8 H 0.08 2.14 7.34 -52.48 -0.39 1.76 16 9 C 0.29 6.47 0.50 -131.85 -0.07 6.41 16 10 N -0.63 -13.27 4.57 -49.33 -0.23 -13.49 16 11 C 0.57 11.92 7.48 -86.93 -0.65 11.27 16 12 S -0.67 -16.23 23.36 -107.50 -2.51 -18.74 16 13 N -0.71 -11.60 5.19 -53.55 -0.28 -11.88 16 14 C 0.15 2.21 3.00 -65.89 -0.20 2.02 16 15 C -0.13 -1.73 6.53 -25.03 -0.16 -1.90 16 16 C -0.12 -1.30 6.80 -25.61 -0.17 -1.47 16 17 C -0.12 -1.19 6.80 -25.62 -0.17 -1.37 16 18 C -0.13 -1.55 6.45 -25.07 -0.16 -1.71 16 19 C -0.11 -2.34 4.48 -25.03 -0.11 -2.45 16 20 C -0.12 -2.22 6.91 -24.69 -0.17 -2.39 16 21 C -0.13 -2.26 6.83 -25.07 -0.17 -2.43 16 22 C -0.09 -1.95 5.28 -25.62 -0.14 -2.08 16 23 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 24 H 0.38 7.31 8.10 -40.82 -0.33 6.98 16 25 H 0.38 5.36 8.59 -40.82 -0.35 5.00 16 26 H 0.12 2.16 6.74 -51.93 -0.35 1.81 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.68 8.02 -51.93 -0.42 0.26 16 35 H 0.04 0.76 7.99 -51.93 -0.41 0.35 16 36 H 0.09 2.20 6.25 -51.93 -0.32 1.88 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.90 6.97 -51.93 -0.36 1.54 16 42 H 0.04 0.83 7.45 -51.93 -0.39 0.45 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -28.91 332.97 -11.94 -40.85 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.11 Total: 10.92 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.47 Total: -6.61 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.15 Total: -48.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -16.23 SS G_CDS: -2.51 Total: -18.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.91 -11.94 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198588485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.177 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds