Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48502 * 109.46951 * 270.00414 * 3 2 1 5 5 H 1.48503 * 109.47171 * 29.99989 * 3 2 1 6 6 H 1.48492 * 109.47519 * 150.00341 * 3 2 1 7 7 C 1.37878 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00064 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00154 * 179.97438 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47805 * 86.03824 * 90.88256 * 10 9 7 12 12 C 1.34776 * 134.45584 * 204.64698 * 11 10 9 13 13 S 1.71205 * 120.00137 * 179.86747 * 12 11 10 14 14 N 1.34776 * 120.00289 * 359.86435 * 12 11 10 15 15 C 1.46495 * 120.00457 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47291 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46940 * 294.99736 * 16 15 14 18 18 C 1.53001 * 109.46940 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.46860 * 59.99843 * 18 17 16 20 20 C 1.53000 * 109.47472 * 299.99831 * 19 18 17 21 21 C 1.53000 * 109.46860 * 174.99579 * 16 15 14 22 22 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 23 23 H 0.96999 * 120.00183 * 359.97438 * 1 2 3 24 24 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 25 25 H 1.08999 * 113.76704 * 205.15033 * 10 9 7 26 26 H 1.09002 * 113.76463 * 336.53826 * 10 9 7 27 27 H 0.97009 * 119.99409 * 0.02562 * 14 12 11 28 28 H 1.09001 * 109.46877 * 299.99639 * 15 14 12 29 29 H 1.09001 * 109.47402 * 59.99458 * 15 14 12 30 30 H 1.09004 * 109.46822 * 54.99862 * 16 15 14 31 31 H 1.09000 * 109.46571 * 299.99774 * 17 16 15 32 32 H 1.09002 * 109.46866 * 60.00048 * 17 16 15 33 33 H 1.08995 * 109.47051 * 299.99996 * 18 17 16 34 34 H 1.08997 * 109.46885 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.47070 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.47172 * 60.00497 * 19 18 17 37 37 H 1.09000 * 109.46905 * 300.00015 * 20 19 18 38 38 H 1.08999 * 109.47304 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.47562 * 299.99481 * 21 16 15 40 40 H 1.08995 * 109.47163 * 60.00222 * 21 16 15 41 41 H 1.08999 * 113.77186 * 221.15323 * 22 11 10 42 42 H 1.09004 * 113.76624 * 89.74800 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.1319 -0.9803 1.3915 11 7 4.1116 -2.4531 1.5138 12 6 4.0838 -3.3139 2.5505 13 16 4.0642 -5.0013 2.2618 14 7 4.0716 -2.8464 3.8145 15 6 4.0420 -3.7820 4.9414 16 6 4.0341 -2.9979 6.2552 17 6 5.3505 -2.2318 6.3998 18 6 5.3429 -1.4482 7.7140 19 6 5.1866 -2.4194 8.8858 20 6 3.8701 -3.1856 8.7412 21 6 3.8775 -3.9687 7.4274 22 6 4.1313 -2.6025 0.0457 23 1 -0.4850 0.8400 0.0004 24 1 3.9362 -0.5532 -0.7738 25 1 5.1353 -0.5554 1.3649 26 1 3.4714 -0.4707 2.0931 27 1 4.0824 -1.8902 3.9781 28 1 3.1442 -4.3970 4.8795 29 1 4.9238 -4.4218 4.9058 30 1 3.2021 -2.2937 6.2530 31 1 6.1824 -2.9361 6.4020 32 1 5.4620 -1.5402 5.5647 33 1 4.5109 -0.7441 7.7122 34 1 6.2809 -0.9028 7.8172 35 1 5.1816 -1.8613 9.8221 36 1 6.0186 -3.1236 8.8876 37 1 3.0382 -2.4814 8.7396 38 1 3.7586 -3.8772 9.5763 39 1 2.9396 -4.5145 7.3245 40 1 4.7094 -4.6729 7.4296 41 1 3.4704 -3.3859 -0.3251 42 1 5.1347 -2.6552 -0.3770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199916864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = 19.181067 kcal Electronic energy + Delta-G solvation = -20258.865851 eV Core-core repulsion = 17364.783266 eV Total energy + Delta-G solvation = -2894.082585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71201 -39.00559 -36.48819 -32.93812 -32.07112 -31.00778 -29.68285 -26.31240 -25.94252 -24.86180 -22.93738 -21.98284 -21.48877 -19.98842 -19.20024 -17.62796 -16.94246 -16.86405 -15.66369 -15.33575 -15.02974 -14.68004 -14.38637 -14.29634 -14.00266 -13.50027 -13.32585 -12.96477 -12.48383 -12.39709 -12.18664 -12.15314 -11.57969 -11.50282 -11.35960 -11.12377 -11.01672 -10.73066 -10.68413 -10.49215 -10.36930 -10.25714 -10.18041 -9.98631 -9.45752 -8.82771 -8.37043 -7.19030 -6.99468 -6.30490 -4.34384 2.07874 2.42429 3.05483 3.08899 3.14996 3.19237 3.67185 4.17338 4.38556 4.47449 4.49099 4.87244 4.90622 5.00355 5.04267 5.21951 5.25068 5.28028 5.39606 5.45096 5.56883 5.62617 5.66621 5.71646 5.78493 5.81420 5.85365 5.90256 5.92775 5.96438 5.98470 6.00704 6.06057 6.13969 6.26600 6.43645 6.76836 6.92569 7.24476 7.42030 8.01066 8.26543 8.77327 9.27473 10.81444 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.004584 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.220039 B = 6106.371877 C = 6999.083353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.064 3.936 11 N -0.574 5.574 12 C 0.598 3.402 13 S -0.701 6.701 14 N -0.693 5.693 15 C 0.136 3.864 16 C -0.102 4.102 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.109 4.109 22 C 0.128 3.872 23 H 0.268 0.732 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.394 0.606 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.040 0.791 15.038 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.545 4.545 8 H 0.098 0.902 9 C -0.019 4.019 10 C -0.062 4.062 11 N -0.281 5.281 12 C 0.238 3.762 13 S -0.574 6.574 14 N -0.324 5.324 15 C 0.012 3.988 16 C -0.121 4.121 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.147 4.147 22 C 0.006 3.994 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.230 0.770 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.835 -0.298 15.013 18.517 hybrid contribution 0.341 2.305 0.339 2.355 sum 11.175 2.007 15.351 19.094 Atomic orbital electron populations 1.69894 1.06369 1.27349 1.48645 1.25015 0.94712 0.99069 0.93975 0.86897 0.80257 0.83621 0.79008 1.19829 1.21218 1.18695 1.20655 0.86944 0.95045 1.51863 0.90169 1.20884 0.97723 0.92046 0.91246 1.24424 0.99829 0.78880 1.03018 1.49208 1.64867 1.07353 1.06701 1.21573 0.80238 0.93352 0.81048 1.93145 1.78043 0.93543 1.92622 1.44781 1.73997 1.10093 1.03568 1.21631 1.04297 0.91066 0.81827 1.21468 0.98641 0.97940 0.94012 1.21620 0.97341 0.99026 0.97329 1.21532 1.01716 0.97875 0.94592 1.21544 0.97910 0.98324 0.97963 1.21513 0.97751 0.99090 0.97262 1.21453 1.02591 0.97440 0.93250 1.23597 1.00332 1.00869 0.74596 0.92242 0.92524 0.90915 0.90219 0.77012 0.89936 0.90086 0.90514 0.91539 0.92285 0.91973 0.92088 0.92229 0.91988 0.91953 0.91883 0.91329 0.91436 0.88749 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.96 55.43 0.77 -24.61 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 18.81 26.89 -169.99 -4.57 14.24 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.26 -5.03 6.03 56.52 0.34 -4.69 16 7 C -0.51 -12.99 9.23 -34.44 -0.32 -13.31 16 8 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 9 C 0.00 0.02 2.95 -90.84 -0.27 -0.25 16 10 C 0.06 1.13 6.54 -2.84 -0.02 1.12 16 11 N -0.57 -10.90 3.53 -180.24 -0.64 -11.54 16 12 C 0.60 11.53 8.09 -86.92 -0.70 10.82 16 13 S -0.70 -15.81 29.02 -107.50 -3.12 -18.93 16 14 N -0.69 -10.56 5.29 -62.03 -0.33 -10.89 16 15 C 0.14 1.78 4.52 -4.04 -0.02 1.77 16 16 C -0.10 -1.01 2.23 -90.62 -0.20 -1.21 16 17 C -0.12 -1.05 5.08 -26.73 -0.14 -1.19 16 18 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 19 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 20 C -0.12 -0.91 5.92 -26.76 -0.16 -1.07 16 21 C -0.11 -0.95 5.20 -26.76 -0.14 -1.09 16 22 C 0.13 2.40 8.10 -2.96 -0.02 2.37 16 23 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.06 1.07 7.20 -51.93 -0.37 0.70 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.45 7.82 -51.93 -0.41 1.05 16 27 H 0.39 5.32 7.27 -40.82 -0.30 5.02 16 28 H 0.08 1.23 7.99 -51.93 -0.41 0.81 16 29 H 0.08 1.13 7.99 -51.93 -0.42 0.71 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.56 7.18 -51.93 -0.37 0.19 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.95 8.09 -51.93 -0.42 1.53 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -31.01 341.73 -12.52 -43.53 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.39 Total: 5.36 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.40 Total: -2.31 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.19 Total: -47.04 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.57 Total: 14.24 kcal Atomic # 16 Polarization: -15.81 SS G_CDS: -3.12 Total: -18.93 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.01 -12.52 -43.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199916864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.716 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds