Wall clock time and date at job start Tue Mar 31 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00170 * 2 1 4 4 C 1.46899 * 111.00303 * 123.95540 * 2 1 3 5 5 C 1.50698 * 109.47153 * 169.99904 * 4 2 1 6 6 C 1.38405 * 119.84690 * 269.72418 * 5 4 2 7 7 C 1.37916 * 120.15201 * 180.28377 * 6 5 4 8 8 C 1.39678 * 119.84732 * 0.02562 * 7 6 5 9 9 C 1.47819 * 120.15313 * 180.02562 * 8 7 6 10 10 N 1.32573 * 119.99070 * 136.09559 * 9 8 7 11 11 C 1.31741 * 121.72193 * 179.71561 * 10 9 8 12 12 C 1.38869 * 121.50373 * 0.56996 * 11 10 9 13 13 C 1.36878 * 119.79926 * 359.72580 * 12 11 10 14 14 C 1.41128 * 118.39728 * 359.97438 * 13 12 11 15 15 C 1.40880 * 120.72206 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99696 * 151.62554 * 15 14 13 17 17 C 1.40074 * 120.00201 * 331.62896 * 15 14 13 18 18 N 1.30773 * 119.99710 * 348.26553 * 17 15 14 19 19 Si 1.86798 * 120.00101 * 168.26538 * 17 15 14 20 20 H 1.48498 * 109.47568 * 89.99975 * 19 17 15 21 21 H 1.48502 * 109.47091 * 210.00225 * 19 17 15 22 22 H 1.48502 * 109.47197 * 330.00017 * 19 17 15 23 23 C 1.39677 * 119.69532 * 359.97438 * 8 7 6 24 24 C 1.37921 * 119.84697 * 359.97438 * 23 8 7 25 25 H 1.09003 * 109.46475 * 296.04571 * 1 2 3 26 26 H 1.09002 * 109.47063 * 56.04158 * 1 2 3 27 27 H 1.08998 * 109.46962 * 176.04624 * 1 2 3 28 28 H 1.08997 * 109.47166 * 183.96087 * 3 2 1 29 29 H 1.09007 * 109.46870 * 303.95701 * 3 2 1 30 30 H 1.08999 * 109.47208 * 63.95132 * 3 2 1 31 31 H 1.08996 * 109.46981 * 49.99729 * 4 2 1 32 32 H 1.08994 * 109.47055 * 290.00111 * 4 2 1 33 33 H 1.08003 * 119.92344 * 0.25793 * 6 5 4 34 34 H 1.08004 * 120.07875 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.24971 * 180.27612 * 11 10 9 36 36 H 1.08004 * 120.09946 * 179.69804 * 12 11 10 37 37 H 1.08003 * 120.80550 * 179.97438 * 13 12 11 38 38 H 0.97004 * 119.99771 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.07495 * 179.97438 * 23 8 7 40 40 H 1.07997 * 119.92360 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9727 6 6 3.9667 -2.0630 0.3040 7 6 5.3259 -2.2429 0.1547 8 6 6.2137 -1.3015 0.6805 9 6 7.6718 -1.4874 0.5239 10 7 8.4373 -0.4614 0.1790 11 6 9.7408 -0.5872 0.0353 12 6 10.3777 -1.8063 0.2270 13 6 9.6458 -2.9082 0.5789 14 6 8.2508 -2.7648 0.7372 15 6 7.4504 -3.8667 1.0979 16 1 6.5340 -3.7113 1.6479 17 6 7.8431 -5.1636 0.7432 18 7 8.8177 -5.3412 -0.1105 19 14 6.9748 -6.6394 1.4897 20 1 5.8231 -7.0214 0.6336 21 1 7.9235 -7.7783 1.5803 22 1 6.4875 -6.2919 2.8487 23 6 5.7174 -0.1832 1.3542 24 6 4.3557 -0.0152 1.4954 25 1 -0.3632 0.4513 0.9234 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0710 29 1 1.5898 1.9164 -0.8525 30 1 1.7045 1.8724 0.9233 31 1 1.5091 -1.7406 1.1756 32 1 1.7976 -0.2248 2.0627 33 1 3.2792 -2.7906 -0.1014 34 1 5.7030 -3.1098 -0.3677 35 1 10.3269 0.2763 -0.2425 36 1 11.4472 -1.8848 0.0984 37 1 10.1243 -3.8643 0.7317 38 1 9.0895 -6.2393 -0.3564 39 1 6.3983 0.5484 1.7636 40 1 3.9706 0.8488 2.0164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204607079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:18 Heat of formation + Delta-G solvation = 49.975038 kcal Electronic energy + Delta-G solvation = -21276.131995 eV Core-core repulsion = 18247.940785 eV Total energy + Delta-G solvation = -3028.191210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.19088 -38.15939 -36.59346 -34.18558 -32.10557 -30.73578 -30.16015 -29.35288 -27.53323 -26.50003 -25.41742 -22.76103 -22.03004 -21.25560 -21.05634 -19.82305 -17.43943 -16.23312 -15.67986 -15.37676 -15.35085 -15.21912 -14.53825 -14.15264 -13.87276 -13.81174 -13.39440 -12.76120 -12.52152 -12.47802 -12.34642 -12.11048 -11.84467 -11.64224 -11.60088 -11.48941 -11.38073 -11.29806 -11.08870 -10.72400 -10.50347 -10.25494 -9.79962 -9.45196 -8.56730 -8.32058 -8.19245 -8.08704 -7.96710 -7.30522 -6.89662 -4.54359 1.80442 2.19242 2.62558 2.94799 2.98186 3.03219 3.14888 3.79825 4.05213 4.52092 4.64646 5.06453 5.13758 5.27647 5.33978 5.48778 5.52555 5.56957 5.61801 5.68710 5.75339 5.78229 5.84271 6.04663 6.20457 6.26478 6.31403 6.40297 6.65737 6.70959 6.79658 6.86161 6.96064 7.01360 7.02862 7.09126 7.26081 7.30152 7.51586 7.65520 7.73378 7.85631 7.89680 8.35910 8.57887 8.64878 9.55299 9.98192 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.005280 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.162291 B = 5302.072106 C = 6747.638074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.021 3.979 4 C 0.101 3.899 5 C -0.105 4.105 6 C -0.107 4.107 7 C -0.095 4.095 8 C 0.027 3.973 9 C 0.013 3.987 10 N -0.453 5.453 11 C -0.032 4.032 12 C -0.150 4.150 13 C -0.128 4.128 14 C 0.086 3.914 15 C -0.439 4.439 16 H 0.089 0.911 17 C 0.073 3.927 18 N -0.790 5.790 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.111 4.111 24 C -0.122 4.122 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.284 0.716 39 H 0.115 0.885 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 4.090 1.896 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.127 4.127 4 C -0.026 4.026 5 C -0.106 4.106 6 C -0.125 4.125 7 C -0.113 4.113 8 C 0.026 3.974 9 C -0.125 4.125 10 N -0.161 5.161 11 C -0.193 4.193 12 C -0.171 4.171 13 C -0.154 4.154 14 C 0.081 3.919 15 C -0.468 4.468 16 H 0.107 0.893 17 C -0.146 4.146 18 N -0.414 5.414 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.130 4.130 24 C -0.141 4.141 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.145 0.855 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.202 4.471 1.197 11.203 hybrid contribution 0.024 -1.156 1.054 1.565 sum -10.178 3.315 2.251 10.938 Atomic orbital electron populations 1.22381 0.87771 1.02067 1.00132 1.61990 1.07047 1.14125 1.43380 1.22462 1.02185 0.88339 0.99691 1.20992 0.92580 0.98123 0.90909 1.19477 0.93550 0.96191 1.01387 1.20784 0.95129 0.97285 0.99337 1.21465 0.91978 0.99298 0.98604 1.18456 0.91317 0.93100 0.94562 1.19562 0.91231 0.90881 1.10870 1.67031 1.06122 1.33100 1.09829 1.21667 0.90559 0.96196 1.10882 1.21442 0.99043 0.94765 1.01834 1.21434 0.93700 0.97938 1.02365 1.18345 0.92429 0.92125 0.88994 1.19615 1.07204 0.89902 1.30117 0.89295 1.26001 0.94460 1.00924 0.93165 1.69745 1.23373 1.24903 1.23387 0.86250 0.79828 0.79682 0.80849 1.19056 1.19970 1.18194 1.21173 0.94395 0.97804 0.99635 1.20729 0.93241 0.98541 1.01553 0.96014 0.91556 0.91465 0.90270 0.91852 0.96036 0.90404 0.94563 0.86886 0.84866 0.86185 0.88326 0.85492 0.90442 0.86666 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.07 0.57 0.82 16 2 N -0.54 -7.02 5.01 -252.72 -1.27 -8.29 16 3 C 0.02 0.26 9.13 60.07 0.55 0.81 16 4 C 0.10 1.35 5.11 -4.98 -0.03 1.32 16 5 C -0.11 -1.73 4.89 -104.50 -0.51 -2.24 16 6 C -0.11 -1.91 9.68 -39.64 -0.38 -2.29 16 7 C -0.09 -1.98 7.84 -39.16 -0.31 -2.29 16 8 C 0.03 0.60 5.26 -104.90 -0.55 0.05 16 9 C 0.01 0.31 6.43 -82.24 -0.53 -0.21 16 10 N -0.45 -11.22 10.15 -9.17 -0.09 -11.32 16 11 C -0.03 -0.74 11.16 -17.36 -0.19 -0.93 16 12 C -0.15 -3.44 10.03 -39.84 -0.40 -3.84 16 13 C -0.13 -3.22 8.72 -38.98 -0.34 -3.56 16 14 C 0.09 2.20 5.54 -106.41 -0.59 1.61 16 15 C -0.44 -10.87 6.72 -37.89 -0.25 -11.12 16 16 H 0.09 2.16 6.47 -52.48 -0.34 1.82 16 17 C 0.07 1.72 5.26 -17.31 -0.09 1.63 16 18 N -0.79 -19.12 10.91 55.55 0.61 -18.52 16 19 Si 0.91 17.69 29.58 -169.99 -5.03 12.67 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.11 -2.21 9.67 -39.16 -0.38 -2.59 16 24 C -0.12 -2.06 7.94 -39.64 -0.31 -2.38 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 28 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16 29 H 0.06 0.68 8.12 -51.92 -0.42 0.26 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 32 H 0.04 0.45 8.06 -51.93 -0.42 0.04 16 33 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.13 2.95 6.74 -52.48 -0.35 2.60 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 36 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.13 3.21 6.33 -52.48 -0.33 2.87 16 38 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 39 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.11 1.54 8.02 -52.49 -0.42 1.12 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -27.08 330.87 -10.08 -37.16 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.54 Total: 8.51 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -3.75 Total: -25.20 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.75 Total: -38.12 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.08 -10.08 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204607079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.132 kcal (2) G-P(sol) polarization free energy of solvation -27.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds