Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99982 * 2 1 4 4 C 1.46893 * 111.00080 * 123.96228 * 2 1 3 5 5 C 1.50699 * 109.47727 * 66.04360 * 4 2 1 6 6 C 1.38325 * 119.88001 * 89.99913 * 5 4 2 7 7 C 1.38013 * 120.12574 * 179.97438 * 6 5 4 8 8 C 1.39353 * 119.87246 * 359.97438 * 7 6 5 9 9 C 1.48362 * 120.11831 * 180.02562 * 8 7 6 10 10 C 1.38895 * 119.61373 * 180.02562 * 9 8 7 11 11 C 1.40850 * 118.76475 * 180.02562 * 10 9 8 12 12 C 1.41531 * 120.98447 * 180.27128 * 11 10 9 13 13 H 1.08004 * 119.99589 * 155.87206 * 12 11 10 14 14 C 1.40045 * 120.00236 * 335.87401 * 12 11 10 15 15 N 1.30730 * 119.99805 * 343.27315 * 14 12 11 16 16 Si 1.86795 * 120.00013 * 163.27715 * 14 12 11 17 17 H 1.48498 * 109.47326 * 89.99677 * 16 14 12 18 18 H 1.48502 * 109.47412 * 210.00143 * 16 14 12 19 19 H 1.48507 * 109.47081 * 329.99911 * 16 14 12 20 20 C 1.41137 * 118.02612 * 359.97438 * 11 10 9 21 21 C 1.37743 * 119.06943 * 0.02562 * 20 11 10 22 22 N 1.31919 * 121.16017 * 359.97438 * 21 20 11 23 23 C 1.39346 * 119.76012 * 0.28394 * 8 7 6 24 24 C 1.38021 * 119.87470 * 359.44255 * 23 8 7 25 25 H 1.08999 * 109.47228 * 296.04295 * 1 2 3 26 26 H 1.08999 * 109.47246 * 56.04314 * 1 2 3 27 27 H 1.09005 * 109.47065 * 176.04165 * 1 2 3 28 28 H 1.09003 * 109.47036 * 183.95377 * 3 2 1 29 29 H 1.08998 * 109.47035 * 303.95640 * 3 2 1 30 30 H 1.09005 * 109.46808 * 63.95987 * 3 2 1 31 31 H 1.09001 * 109.47100 * 306.03995 * 4 2 1 32 32 H 1.08999 * 109.47123 * 186.04684 * 4 2 1 33 33 H 1.08005 * 119.93020 * 359.95681 * 6 5 4 34 34 H 1.07992 * 120.06102 * 180.02562 * 7 6 5 35 35 H 1.08005 * 120.61565 * 0.02562 * 10 9 8 36 36 H 0.97001 * 119.99663 * 179.97438 * 15 14 12 37 37 H 1.08005 * 120.46463 * 179.97438 * 20 11 10 38 38 H 1.08008 * 119.41684 * 180.02562 * 21 20 11 39 39 H 1.07991 * 120.06506 * 179.72350 * 23 8 7 40 40 H 1.07994 * 119.93925 * 180.25651 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1374 5 6 1.6369 -2.2205 0.9726 6 6 2.4963 -3.0701 0.2994 7 6 2.1733 -4.4031 0.1460 8 6 0.9790 -4.8928 0.6714 9 6 0.6267 -6.3249 0.5101 10 6 -0.5666 -6.8017 1.0375 11 6 -0.8830 -8.1645 0.8745 12 6 -2.0888 -8.6989 1.3878 13 1 -2.5118 -9.5924 0.9527 14 6 -2.7334 -8.0693 2.4599 15 7 -2.0857 -7.2037 3.1949 16 14 -4.5188 -8.4663 2.8396 17 1 -4.5811 -9.6031 3.7930 18 1 -5.1727 -7.2775 3.4433 19 1 -5.2219 -8.8340 1.5843 20 6 0.0350 -8.9798 0.1786 21 6 1.1939 -8.4172 -0.3092 22 7 1.4557 -7.1359 -0.1366 23 6 0.1146 -4.0313 1.3439 24 6 0.4503 -2.7013 1.4964 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9234 31 1 1.5612 -0.3874 2.0627 32 1 3.0797 -0.6612 1.1755 33 1 3.4216 -2.6893 -0.1072 34 1 2.8451 -5.0655 -0.3794 35 1 -1.2392 -6.1397 1.5627 36 1 -2.5323 -6.7674 3.9372 37 1 -0.1679 -10.0304 0.0312 38 1 1.9001 -9.0359 -0.8430 39 1 -0.8142 -4.4046 1.7491 40 1 -0.2169 -2.0337 2.0211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204613370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = 48.872644 kcal Electronic energy + Delta-G solvation = -20900.952971 eV Core-core repulsion = 17872.713958 eV Total energy + Delta-G solvation = -3028.239013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.33485 -38.17564 -36.74755 -34.19099 -32.21492 -30.82673 -30.29185 -29.11273 -27.62050 -26.25746 -25.91401 -22.92810 -22.42089 -21.29410 -20.93630 -19.91942 -17.64065 -16.05898 -15.60991 -15.48850 -15.36097 -15.13513 -14.58447 -14.45774 -13.83199 -13.64956 -13.51201 -12.90977 -12.81607 -12.63151 -12.50312 -12.29080 -12.07236 -11.82923 -11.71836 -11.53920 -11.40569 -11.24388 -10.94773 -10.67553 -10.44406 -10.32917 -9.86662 -9.48276 -8.77579 -8.43314 -8.35048 -8.08621 -7.99784 -7.14290 -6.88861 -4.64803 1.50162 1.96767 2.73876 2.87264 2.98761 3.02934 3.20976 3.80944 3.93920 4.38302 4.71048 4.92050 5.03770 5.15534 5.24532 5.27902 5.45195 5.46557 5.48379 5.62756 5.64757 5.67134 5.69400 5.95564 6.00297 6.06819 6.16247 6.43851 6.52638 6.66170 6.79181 6.79773 6.88714 6.93205 6.99648 7.04928 7.08234 7.24260 7.33058 7.44957 7.54514 7.80829 8.05495 8.38584 8.66768 8.68776 9.53659 10.00892 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.004189 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.292813 B = 6681.875124 C = 7860.826182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.099 3.901 5 C -0.096 4.096 6 C -0.108 4.108 7 C -0.095 4.095 8 C -0.008 4.008 9 C 0.134 3.866 10 C -0.188 4.188 11 C 0.124 3.876 12 C -0.455 4.455 13 H 0.082 0.918 14 C 0.078 3.922 15 N -0.786 5.786 16 Si 0.911 3.089 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.273 4.273 21 C 0.103 3.897 22 N -0.564 5.564 23 C -0.107 4.107 24 C -0.118 4.118 25 H 0.023 0.977 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.284 0.716 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 12.240 -1.414 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.028 4.028 5 C -0.097 4.097 6 C -0.126 4.126 7 C -0.114 4.114 8 C -0.009 4.009 9 C 0.004 3.996 10 C -0.210 4.210 11 C 0.117 3.883 12 C -0.486 4.486 13 H 0.100 0.900 14 C -0.142 4.142 15 N -0.411 5.411 16 Si 0.735 3.265 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.296 4.296 21 C -0.052 4.052 22 N -0.279 5.279 23 C -0.126 4.126 24 C -0.137 4.137 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.919 12.533 -1.976 13.279 hybrid contribution -1.914 -0.254 1.420 2.397 sum 2.005 12.279 -0.555 12.454 Atomic orbital electron populations 1.22476 0.87203 1.03203 0.99922 1.61987 1.08336 1.13093 1.43178 1.22385 1.00710 0.88991 1.00278 1.21015 0.99990 0.90631 0.91202 1.19551 0.95598 0.94213 1.00359 1.20841 0.99341 0.93273 0.99158 1.21290 0.96597 0.94734 0.98749 1.18815 0.93933 0.91929 0.96271 1.19302 0.92328 0.91299 0.96709 1.22272 0.97757 0.96426 1.04564 1.17787 0.91517 0.90929 0.88113 1.19607 1.05249 1.10431 1.13266 0.89955 1.25977 1.00079 0.93391 0.94746 1.69761 1.37280 1.21023 1.13024 0.86260 0.81603 0.79013 0.79645 1.19300 1.19883 1.18284 1.21922 0.97442 0.99299 1.10981 1.21821 0.95123 0.91034 0.97250 1.67251 1.34123 1.05013 1.21537 1.21319 0.99941 0.92764 0.98544 1.20815 0.96408 0.95389 1.01094 0.95850 0.91703 0.90347 0.91431 0.91457 0.95893 0.94291 0.90265 0.86640 0.85168 0.85042 0.90497 0.88036 0.86005 0.85305 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.14 60.06 0.55 0.78 16 2 N -0.54 -6.49 5.01 -252.72 -1.27 -7.76 16 3 C 0.02 0.23 9.57 60.06 0.57 0.80 16 4 C 0.10 1.21 5.11 -4.98 -0.03 1.18 16 5 C -0.10 -1.46 4.89 -104.56 -0.51 -1.97 16 6 C -0.11 -1.73 9.68 -39.63 -0.38 -2.11 16 7 C -0.10 -1.80 9.57 -39.25 -0.38 -2.18 16 8 C -0.01 -0.18 5.88 -104.90 -0.62 -0.80 16 9 C 0.13 3.27 6.73 -83.04 -0.56 2.71 16 10 C -0.19 -4.84 8.14 -38.35 -0.31 -5.15 16 11 C 0.12 3.27 5.60 -106.55 -0.60 2.68 16 12 C -0.45 -11.67 9.12 -37.65 -0.34 -12.01 16 13 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 14 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 15 N -0.79 -19.39 10.93 55.55 0.61 -18.78 16 16 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 C -0.27 -6.65 9.90 -38.66 -0.38 -7.03 16 21 C 0.10 2.39 11.15 -17.70 -0.20 2.20 16 22 N -0.56 -13.71 9.40 -9.94 -0.09 -13.80 16 23 C -0.11 -2.05 9.41 -39.25 -0.37 -2.42 16 24 C -0.12 -1.90 7.95 -39.63 -0.31 -2.22 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.08 1.02 6.17 -51.93 -0.32 0.70 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.08 0.88 8.00 -51.93 -0.42 0.46 16 33 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.13 2.49 7.53 -52.49 -0.40 2.09 16 35 H 0.13 3.37 4.33 -52.48 -0.23 3.14 16 36 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 37 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 38 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 39 H 0.13 2.55 6.18 -52.49 -0.32 2.23 16 40 H 0.11 1.56 8.03 -52.49 -0.42 1.13 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -27.90 332.59 -10.17 -38.07 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.45 Total: 8.20 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.95 Total: -23.76 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.75 Total: -40.33 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.90 -10.17 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204613370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.943 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds