Wall clock time and date at job start Tue Mar 31 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00197 * 2 1 4 4 C 1.46902 * 110.99429 * 123.95001 * 2 1 3 5 5 C 1.50706 * 109.47385 * 66.04727 * 4 2 1 6 6 C 1.38333 * 119.87113 * 89.99270 * 5 4 2 7 7 C 1.38004 * 120.12183 * 179.97438 * 6 5 4 8 8 C 1.39384 * 119.87556 * 0.02562 * 7 6 5 9 9 C 1.48315 * 120.12733 * 179.97438 * 8 7 6 10 10 C 1.39901 * 119.60299 * 179.97438 * 9 8 7 11 11 C 1.38698 * 119.45893 * 180.02562 * 10 9 8 12 12 C 1.38293 * 118.68600 * 359.97438 * 11 10 9 13 13 C 1.40677 * 119.19105 * 0.02562 * 12 11 10 14 14 C 1.41382 * 119.76990 * 180.28197 * 13 12 11 15 15 H 1.08008 * 119.99451 * 359.71834 * 14 13 12 16 16 C 1.40015 * 120.00159 * 179.72638 * 14 13 12 17 17 N 1.30742 * 119.99950 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99874 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47197 * 59.99421 * 18 16 14 20 20 H 1.48501 * 109.47008 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46637 * 299.99608 * 18 16 14 22 22 N 1.32210 * 119.60443 * 359.97438 * 9 8 7 23 23 C 1.39389 * 119.74745 * 0.25379 * 8 7 6 24 24 C 1.38004 * 119.87463 * 359.48518 * 23 8 7 25 25 H 1.08994 * 109.47036 * 296.05522 * 1 2 3 26 26 H 1.09004 * 109.46732 * 56.05223 * 1 2 3 27 27 H 1.08996 * 109.47327 * 176.04525 * 1 2 3 28 28 H 1.09004 * 109.46944 * 183.95244 * 3 2 1 29 29 H 1.09004 * 109.46907 * 303.95006 * 3 2 1 30 30 H 1.08996 * 109.47377 * 63.95092 * 3 2 1 31 31 H 1.08997 * 109.47429 * 306.04496 * 4 2 1 32 32 H 1.09005 * 109.47028 * 186.04396 * 4 2 1 33 33 H 1.07994 * 119.94249 * 359.96075 * 6 5 4 34 34 H 1.08000 * 120.06184 * 180.02562 * 7 6 5 35 35 H 1.07991 * 120.27481 * 359.97438 * 10 9 8 36 36 H 1.07990 * 120.65387 * 180.02562 * 11 10 9 37 37 H 1.08003 * 120.40403 * 180.02562 * 12 11 10 38 38 H 0.97001 * 119.99395 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.06107 * 179.72836 * 23 8 7 40 40 H 1.07997 * 119.93948 * 180.25206 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 1.6368 -2.2204 0.9731 6 6 2.4963 -3.0700 0.2999 7 6 2.1734 -4.4029 0.1466 8 6 0.9784 -4.8926 0.6711 9 6 0.6255 -6.3240 0.5091 10 6 -0.5764 -6.8039 1.0404 11 6 -0.9032 -8.1432 0.8876 12 6 -0.0242 -8.9677 0.2094 13 6 1.1691 -8.4259 -0.3019 14 6 2.0736 -9.2565 -1.0025 15 1 1.8495 -10.3041 -1.1395 16 6 3.2600 -8.7210 -1.5184 17 7 3.5311 -7.4527 -1.3528 18 14 4.4555 -9.8187 -2.4434 19 1 3.7777 -10.3990 -3.6303 20 1 5.6245 -9.0162 -2.8845 21 1 4.9143 -10.9133 -1.5509 22 7 1.4506 -7.1312 -0.1357 23 6 0.1135 -4.0306 1.3434 24 6 0.4493 -2.7007 1.4954 25 1 -0.3633 0.4514 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0829 1.3431 -0.0708 29 1 1.5899 1.9163 -0.8525 30 1 1.7045 1.8724 0.9232 31 1 1.5610 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1758 33 1 3.4216 -2.6894 -0.1066 34 1 2.8453 -5.0654 -0.3788 35 1 -1.2440 -6.1373 1.5659 36 1 -1.8261 -8.5340 1.2896 37 1 -0.2511 -10.0149 0.0740 38 1 4.3528 -7.0818 -1.7106 39 1 -0.8157 -4.4037 1.7479 40 1 -0.2181 -2.0328 2.0196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204613404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:28 Heat of formation + Delta-G solvation = 60.916522 kcal Electronic energy + Delta-G solvation = -20995.586526 eV Core-core repulsion = 17967.869775 eV Total energy + Delta-G solvation = -3027.716751 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.25093 -38.05667 -36.69953 -33.71472 -32.07304 -30.79026 -30.09645 -29.43762 -27.60822 -26.61580 -25.37157 -22.86144 -22.31548 -21.24382 -20.83551 -19.83369 -17.49806 -16.21633 -15.52036 -15.44885 -15.38879 -14.77743 -14.70302 -14.43659 -13.79232 -13.52703 -13.37365 -12.80437 -12.69144 -12.54463 -12.36586 -12.24112 -11.94515 -11.69547 -11.69250 -11.45649 -11.15061 -11.08156 -10.78048 -10.64945 -10.44536 -10.29561 -9.90335 -9.44612 -8.75867 -8.39622 -8.29748 -8.03706 -7.62599 -7.16665 -6.43658 -4.54284 1.55696 2.04456 2.81662 3.05815 3.08059 3.10050 3.21040 3.93611 3.98387 4.47449 4.84946 4.96475 5.05692 5.17868 5.26401 5.35104 5.46594 5.49729 5.52764 5.68519 5.70864 5.72401 5.92496 5.95947 6.03440 6.07431 6.29005 6.45806 6.51056 6.62700 6.73696 6.80021 6.88510 6.93837 7.00908 7.08505 7.20906 7.33585 7.37405 7.58227 7.66322 7.72502 8.01502 8.20240 8.64429 8.89412 10.03693 10.28850 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.004294 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.853817 B = 6518.950674 C = 7740.391494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.099 3.901 5 C -0.094 4.094 6 C -0.110 4.110 7 C -0.080 4.080 8 C -0.016 4.016 9 C 0.174 3.826 10 C -0.301 4.301 11 C -0.060 4.060 12 C -0.273 4.273 13 C 0.257 3.743 14 C -0.432 4.432 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.718 5.718 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.265 1.265 22 N -0.467 5.467 23 C -0.113 4.113 24 C -0.126 4.126 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 12.355 3.029 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.028 4.028 5 C -0.095 4.095 6 C -0.129 4.129 7 C -0.099 4.099 8 C -0.017 4.017 9 C 0.030 3.970 10 C -0.324 4.324 11 C -0.084 4.084 12 C -0.296 4.296 13 C 0.131 3.869 14 C -0.463 4.463 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.339 5.339 18 Si 0.732 3.268 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.190 1.190 22 N -0.180 5.180 23 C -0.132 4.132 24 C -0.145 4.145 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.527 12.580 2.182 12.778 hybrid contribution -0.699 -0.442 0.716 1.094 sum -1.225 12.138 2.899 12.539 Atomic orbital electron populations 1.22467 0.87294 1.03145 0.99806 1.61978 1.08262 1.13084 1.43221 1.22384 1.00779 0.88973 1.00206 1.21023 1.00043 0.90702 0.91057 1.19574 0.95561 0.94146 1.00212 1.20934 0.99387 0.93473 0.99071 1.21758 0.96559 0.94799 0.96738 1.18877 0.94151 0.92038 0.96641 1.19773 0.90910 0.92092 0.94223 1.21215 1.00937 0.96190 1.14058 1.20789 0.97289 0.93637 0.96727 1.21792 0.98904 0.99187 1.09677 1.18515 0.89943 0.88700 0.89743 1.19563 1.01663 0.96223 1.28874 0.89868 1.26022 0.98593 0.95222 0.95528 1.70057 1.21306 1.12236 1.30340 0.86385 0.79509 0.80611 0.80293 1.18989 1.20182 1.18995 1.68719 1.29300 1.03699 1.16255 1.21188 0.99519 0.92964 0.99508 1.20730 0.96576 0.95315 1.01876 0.95971 0.91745 0.90366 0.91395 0.91470 0.95952 0.94418 0.90244 0.86646 0.82874 0.88470 0.88508 0.88282 0.91564 0.86146 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.07 0.55 0.79 16 2 N -0.54 -6.67 5.01 -252.71 -1.27 -7.94 16 3 C 0.02 0.24 9.57 60.06 0.57 0.81 16 4 C 0.10 1.24 5.11 -4.97 -0.03 1.21 16 5 C -0.09 -1.45 4.89 -104.55 -0.51 -1.96 16 6 C -0.11 -1.91 9.68 -39.63 -0.38 -2.30 16 7 C -0.08 -1.67 9.57 -39.24 -0.38 -2.04 16 8 C -0.02 -0.35 5.88 -104.90 -0.62 -0.96 16 9 C 0.17 4.30 6.74 -82.94 -0.56 3.74 16 10 C -0.30 -6.86 9.48 -38.79 -0.37 -7.23 16 11 C -0.06 -1.37 10.15 -39.39 -0.40 -1.77 16 12 C -0.27 -6.73 9.83 -38.64 -0.38 -7.11 16 13 C 0.26 7.01 6.55 -85.01 -0.56 6.46 16 14 C -0.43 -11.45 9.14 -37.72 -0.34 -11.80 16 15 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 16 C 0.07 1.79 5.50 -17.35 -0.10 1.69 16 17 N -0.72 -18.51 11.11 55.55 0.62 -17.90 16 18 Si 0.91 18.40 29.56 -169.99 -5.02 13.38 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 N -0.47 -12.74 6.92 -7.68 -0.05 -12.79 16 23 C -0.11 -2.03 9.42 -39.24 -0.37 -2.40 16 24 C -0.13 -1.96 7.94 -39.63 -0.31 -2.27 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.08 1.01 6.16 -51.93 -0.32 0.69 16 28 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 32 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.15 3.56 7.18 -52.49 -0.38 3.18 16 35 H 0.10 1.93 6.17 -52.49 -0.32 1.61 16 36 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 38 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 39 H 0.12 2.00 6.17 -52.49 -0.32 1.67 16 40 H 0.11 1.42 8.03 -52.49 -0.42 1.00 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -28.72 333.22 -10.41 -39.13 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.53 Total: 6.24 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -4.18 Total: -25.14 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.70 Total: -38.63 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.72 -10.41 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204613404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.047 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds