Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46892 * 111.00161 * 2 1 4 4 C 1.46905 * 110.99996 * 123.95680 * 2 1 3 5 5 C 1.50702 * 109.46879 * 66.04689 * 4 2 1 6 6 C 1.38390 * 119.85507 * 90.00132 * 5 4 2 7 7 C 1.37935 * 120.14823 * 179.97438 * 6 5 4 8 8 C 1.39621 * 119.84904 * 0.02562 * 7 6 5 9 9 C 1.47967 * 120.14217 * 179.97438 * 8 7 6 10 10 C 1.40269 * 120.34426 * 180.20294 * 9 8 7 11 11 C 1.36690 * 118.60090 * 180.26748 * 10 9 8 12 12 C 1.40866 * 119.25608 * 359.75628 * 11 10 9 13 13 C 1.41000 * 119.67898 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99919 * 0.02562 * 13 12 11 15 15 C 1.40107 * 119.99617 * 180.02562 * 13 12 11 16 16 N 1.30710 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99724 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47163 * 59.99647 * 17 15 13 19 19 H 1.48495 * 109.46797 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46882 * 299.99785 * 17 15 13 21 21 N 1.33775 * 120.63692 * 0.02562 * 12 11 10 22 22 C 1.31192 * 121.50953 * 359.97438 * 21 12 11 23 23 C 1.39624 * 119.71004 * 0.25110 * 8 7 6 24 24 C 1.37927 * 119.85030 * 359.47278 * 23 8 7 25 25 H 1.08994 * 109.46842 * 296.04430 * 1 2 3 26 26 H 1.09004 * 109.46821 * 56.04679 * 1 2 3 27 27 H 1.09004 * 109.47087 * 176.04366 * 1 2 3 28 28 H 1.08999 * 109.47382 * 183.95216 * 3 2 1 29 29 H 1.09001 * 109.47451 * 303.95278 * 3 2 1 30 30 H 1.09003 * 109.47086 * 63.95965 * 3 2 1 31 31 H 1.09000 * 109.46969 * 306.04502 * 4 2 1 32 32 H 1.08995 * 109.47193 * 186.04357 * 4 2 1 33 33 H 1.07997 * 119.92791 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.07350 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.69850 * 0.02783 * 10 9 8 36 36 H 1.08001 * 120.36892 * 179.77475 * 11 10 9 37 37 H 0.97001 * 119.99630 * 180.02562 * 16 15 13 38 38 H 1.08002 * 119.65427 * 179.97438 * 22 21 12 39 39 H 1.08001 * 120.07202 * 179.74991 * 23 8 7 40 40 H 1.08004 * 119.92864 * 180.25230 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.6369 -2.2205 0.9727 6 6 2.4970 -3.0700 0.2991 7 6 2.1752 -4.4024 0.1452 8 6 0.9782 -4.8933 0.6703 9 6 0.6262 -6.3213 0.5084 10 6 -0.5772 -6.8181 1.0305 11 6 -0.8641 -8.1443 0.8652 12 6 0.0492 -8.9655 0.1755 13 6 -0.2381 -10.3347 -0.0006 14 1 -1.1548 -10.7489 0.3922 15 6 0.6659 -11.1577 -0.6851 16 7 1.7752 -10.6561 -1.1609 17 14 0.2857 -12.9717 -0.9178 18 1 -0.9807 -13.1184 -1.6793 19 1 1.3928 -13.6172 -1.6680 20 1 0.1431 -13.6218 0.4098 21 7 1.1864 -8.4589 -0.3141 22 6 1.4893 -7.1905 -0.1714 23 6 0.1122 -4.0296 1.3437 24 6 0.4489 -2.7007 1.4956 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7045 1.8722 0.9234 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 3.4228 -2.6891 -0.1062 34 1 2.8475 -5.0644 -0.3804 35 1 -1.2608 -6.1673 1.5554 36 1 -1.7809 -8.5578 1.2589 37 1 2.4008 -11.2259 -1.6352 38 1 2.4159 -6.8133 -0.5784 39 1 -0.8171 -4.4022 1.7487 40 1 -0.2182 -2.0323 2.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204639095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = 57.214355 kcal Electronic energy + Delta-G solvation = -20546.525939 eV Core-core repulsion = 17518.648649 eV Total energy + Delta-G solvation = -3027.877289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.28172 -38.13783 -36.77024 -33.93855 -32.13309 -30.99302 -30.18019 -29.47432 -27.63212 -26.96046 -24.95910 -22.91180 -22.52629 -21.25869 -20.86407 -19.94401 -17.64685 -16.36313 -15.70241 -15.48556 -15.37815 -15.30131 -14.56756 -14.46132 -13.77827 -13.60340 -13.23465 -12.98786 -12.65879 -12.62023 -12.43036 -12.20966 -11.97091 -11.89402 -11.70573 -11.56896 -11.26600 -11.23798 -11.05520 -10.75818 -10.49915 -10.26150 -10.00841 -9.62596 -8.79596 -8.46157 -8.37240 -8.24320 -7.68252 -7.16079 -6.58377 -4.63433 1.56962 1.95936 2.75033 2.98873 3.00693 3.02063 3.14387 3.80242 3.96277 4.41477 4.74403 4.95410 5.03634 5.14865 5.24364 5.39192 5.44269 5.44954 5.57003 5.65000 5.68306 5.70649 5.82130 5.92748 5.93657 5.98962 6.10395 6.18224 6.48355 6.56754 6.67454 6.71902 6.86498 6.91439 6.94203 7.01201 7.09241 7.10453 7.27794 7.46340 7.62235 7.75692 7.89767 8.05528 8.45608 8.75152 9.95652 10.11536 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.047034 B = 0.002971 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.174475 B = 9423.013494 C = 9767.390247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.103 3.897 5 C -0.129 4.129 6 C -0.084 4.084 7 C -0.148 4.148 8 C 0.037 3.963 9 C -0.279 4.279 10 C -0.035 4.035 11 C -0.273 4.273 12 C 0.251 3.749 13 C -0.407 4.407 14 H 0.087 0.913 15 C 0.063 3.937 16 N -0.699 5.699 17 Si 0.912 3.088 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.489 5.489 22 C 0.158 3.842 23 C -0.151 4.151 24 C -0.101 4.101 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.278 0.722 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 14.054 2.439 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.024 4.024 5 C -0.129 4.129 6 C -0.103 4.103 7 C -0.167 4.167 8 C 0.036 3.964 9 C -0.284 4.284 10 C -0.058 4.058 11 C -0.295 4.295 12 C 0.129 3.871 13 C -0.437 4.437 14 H 0.106 0.894 15 C -0.165 4.165 16 N -0.319 5.319 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.187 1.187 21 N -0.200 5.200 22 C -0.012 4.012 23 C -0.169 4.169 24 C -0.120 4.120 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.071 13.131 1.447 13.254 hybrid contribution -1.071 0.270 1.096 1.556 sum 0.000 13.401 2.543 13.640 Atomic orbital electron populations 1.22451 0.87347 1.03081 0.99758 1.62002 1.08228 1.12989 1.43388 1.22381 1.00718 0.89093 1.00193 1.20952 0.99751 0.90795 0.90887 1.19389 0.96336 0.94128 1.03082 1.20746 0.98750 0.93146 0.97651 1.21171 0.97558 0.95223 1.02708 1.18880 0.92376 0.92678 0.92491 1.19069 1.00574 0.92516 1.16243 1.20659 0.94638 0.94787 0.95739 1.21433 1.02591 0.94602 1.10902 1.18668 0.87331 0.93414 0.87718 1.19765 1.04168 0.92177 1.27585 0.89447 1.26204 0.94486 1.01321 0.94478 1.70109 1.05591 1.36673 1.19508 0.86298 0.79325 0.81173 0.79625 1.18694 1.19964 1.18707 1.68802 1.18332 1.10772 1.22135 1.22789 0.96249 0.90121 0.92012 1.21084 1.00206 0.93132 1.02483 1.20754 0.95977 0.95307 0.99934 0.96028 0.91797 0.90409 0.91456 0.91511 0.95984 0.94649 0.90512 0.86975 0.86258 0.88358 0.88158 0.91073 0.85948 0.86719 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.06 0.55 0.79 16 2 N -0.54 -6.40 5.01 -252.72 -1.27 -7.66 16 3 C 0.02 0.22 9.57 60.06 0.57 0.80 16 4 C 0.10 1.24 5.11 -4.97 -0.03 1.21 16 5 C -0.13 -1.88 4.89 -104.51 -0.51 -2.39 16 6 C -0.08 -1.31 9.68 -39.64 -0.38 -1.70 16 7 C -0.15 -2.63 9.44 -39.18 -0.37 -3.00 16 8 C 0.04 0.72 5.88 -104.88 -0.62 0.10 16 9 C -0.28 -6.24 5.92 -104.45 -0.62 -6.86 16 10 C -0.04 -0.78 9.46 -39.38 -0.37 -1.15 16 11 C -0.27 -6.56 9.76 -39.15 -0.38 -6.94 16 12 C 0.25 6.72 6.55 -84.98 -0.56 6.16 16 13 C -0.41 -10.49 9.12 -37.83 -0.35 -10.84 16 14 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 15 C 0.06 1.53 5.50 -17.33 -0.10 1.43 16 16 N -0.70 -17.96 11.44 55.56 0.64 -17.33 16 17 Si 0.91 17.73 29.56 -169.99 -5.02 12.70 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 N -0.49 -13.24 7.83 -10.85 -0.08 -13.33 16 22 C 0.16 3.80 10.60 -17.13 -0.18 3.62 16 23 C -0.15 -2.61 9.44 -39.18 -0.37 -2.98 16 24 C -0.10 -1.52 7.94 -39.64 -0.31 -1.84 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.08 0.98 6.16 -51.93 -0.32 0.66 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 30 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.12 2.04 6.22 -52.48 -0.33 1.71 16 35 H 0.10 1.89 6.30 -52.49 -0.33 1.56 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 38 H 0.12 2.66 6.21 -52.49 -0.33 2.33 16 39 H 0.11 1.88 6.25 -52.49 -0.33 1.55 16 40 H 0.11 1.37 8.03 -52.48 -0.42 0.95 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -28.28 331.30 -10.16 -38.44 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.39 Total: 5.77 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -4.02 Total: -23.59 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.72 Total: -38.32 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.02 Total: 12.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.28 -10.16 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204639095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.652 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds