Wall clock time and date at job start Tue Mar 31 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99792 * 2 1 4 4 C 1.46901 * 110.99781 * 123.95184 * 2 1 3 5 5 C 1.50699 * 109.47118 * 66.05094 * 4 2 1 6 6 C 1.38328 * 119.87794 * 89.99621 * 5 4 2 7 7 C 1.38009 * 120.11834 * 180.02562 * 6 5 4 8 8 C 1.39348 * 119.88258 * 359.97438 * 7 6 5 9 9 C 1.48383 * 120.12351 * 180.02562 * 8 7 6 10 10 C 1.40036 * 120.82218 * 0.02562 * 9 8 7 11 11 C 1.38511 * 119.42395 * 179.97438 * 10 9 8 12 12 N 1.31478 * 121.14406 * 0.02562 * 11 10 9 13 13 C 1.33647 * 121.79298 * 359.97438 * 12 11 10 14 14 C 1.41426 * 119.77696 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99912 * 187.07025 * 14 13 12 16 16 C 1.40033 * 119.99947 * 7.07167 * 14 13 12 17 17 N 1.30741 * 120.00144 * 182.56910 * 16 14 13 18 18 Si 1.86809 * 120.00169 * 2.56807 * 16 14 13 19 19 H 1.48499 * 109.47093 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.46992 * 300.00230 * 18 16 14 21 21 H 1.48506 * 109.46797 * 59.99784 * 18 16 14 22 22 C 1.39302 * 120.82129 * 180.25959 * 9 8 7 23 23 C 1.39339 * 119.75254 * 0.27717 * 8 7 6 24 24 C 1.38021 * 119.87716 * 359.44435 * 23 8 7 25 25 H 1.08997 * 109.47229 * 296.04793 * 1 2 3 26 26 H 1.09007 * 109.46808 * 56.04762 * 1 2 3 27 27 H 1.08996 * 109.46864 * 176.04519 * 1 2 3 28 28 H 1.08999 * 109.47358 * 183.95098 * 3 2 1 29 29 H 1.09001 * 109.47235 * 303.95234 * 3 2 1 30 30 H 1.09002 * 109.47297 * 63.95678 * 3 2 1 31 31 H 1.09000 * 109.47478 * 306.04813 * 4 2 1 32 32 H 1.09006 * 109.46872 * 186.04912 * 4 2 1 33 33 H 1.08001 * 119.93819 * 0.02562 * 6 5 4 34 34 H 1.07999 * 120.06212 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.28944 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.42664 * 179.97438 * 11 10 9 37 37 H 0.96999 * 119.99741 * 354.84870 * 17 16 14 38 38 H 1.08005 * 120.58299 * 0.02562 * 22 9 8 39 39 H 1.08005 * 120.06092 * 179.72486 * 23 8 7 40 40 H 1.08006 * 119.93680 * 180.27445 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9729 6 6 2.4964 -3.0699 0.2997 7 6 2.1728 -4.4027 0.1455 8 6 0.9782 -4.8922 0.6698 9 6 0.6252 -6.3243 0.5076 10 6 1.4808 -7.2019 -0.1698 11 6 1.1229 -8.5332 -0.3039 12 7 -0.0065 -8.9871 0.1934 13 6 -0.8577 -8.1916 0.8481 14 6 -2.0612 -8.7249 1.3652 15 1 -2.8032 -8.0673 1.7933 16 6 -2.2906 -10.1056 1.3220 17 7 -3.4240 -10.5938 1.7539 18 14 -0.9774 -11.2501 0.6472 19 1 -1.4624 -12.6522 0.7111 20 1 -0.6850 -10.8907 -0.7636 21 1 0.2594 -11.1171 1.4584 22 6 -0.5677 -6.8280 1.0211 23 6 0.1138 -4.0308 1.3424 24 6 0.4501 -2.7010 1.4958 25 1 -0.3633 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9164 -0.8525 30 1 1.7044 1.8724 0.9233 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6610 1.1757 33 1 3.4223 -2.6895 -0.1058 34 1 2.8447 -5.0652 -0.3798 35 1 2.4117 -6.8438 -0.5840 36 1 1.7825 -9.2100 -0.8266 37 1 -4.0755 -10.0097 2.1726 38 1 -1.2560 -6.1822 1.5462 39 1 -0.8155 -4.4040 1.7468 40 1 -0.2172 -2.0334 2.0208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204642415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:57 Heat of formation + Delta-G solvation = 42.388280 kcal Electronic energy + Delta-G solvation = -20701.453698 eV Core-core repulsion = 17672.933502 eV Total energy + Delta-G solvation = -3028.520196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.66026 -38.49685 -37.05790 -33.95384 -32.89619 -31.06820 -30.26337 -29.96434 -27.78403 -26.55981 -25.59720 -23.30529 -22.58801 -21.66994 -20.82054 -20.21426 -18.30313 -16.64206 -15.79825 -15.68773 -15.62442 -15.10959 -15.05131 -14.34841 -14.10030 -13.85382 -13.42906 -13.31581 -13.03060 -12.65951 -12.48278 -12.44415 -12.31717 -12.14359 -11.97105 -11.88582 -11.75422 -11.15900 -10.90204 -10.68858 -10.35734 -10.07025 -9.62169 -9.46868 -9.30331 -8.74114 -8.59048 -8.02461 -7.72155 -7.69983 -7.26350 -4.82751 1.15312 1.62345 2.51576 2.69137 3.61749 3.63923 3.79050 4.03174 4.19796 4.44853 4.66037 4.69427 4.83494 4.95369 5.07958 5.11329 5.18946 5.23884 5.27686 5.39522 5.47180 5.49994 5.56534 5.63074 5.68651 5.76933 5.80449 6.01545 6.13937 6.29673 6.40715 6.45395 6.53083 6.66418 6.76962 6.78668 6.82336 6.95509 7.10956 7.24411 7.37820 7.43915 7.63814 8.02936 8.24231 8.59083 9.43444 9.97568 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036405 B = 0.003383 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.948289 B = 8274.695552 C = 8840.451795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.097 3.903 5 C -0.093 4.093 6 C -0.100 4.100 7 C -0.110 4.110 8 C -0.023 4.023 9 C 0.013 3.987 10 C -0.303 4.303 11 C 0.152 3.848 12 N -0.574 5.574 13 C 0.249 3.751 14 C -0.472 4.472 15 H 0.081 0.919 16 C 0.043 3.957 17 N -0.803 5.803 18 Si 1.156 2.844 19 H -0.333 1.333 20 H -0.279 1.279 21 H -0.293 1.293 22 C -0.241 4.241 23 C -0.111 4.111 24 C -0.114 4.114 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.283 0.717 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 18.241 -1.408 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.030 4.030 5 C -0.093 4.093 6 C -0.118 4.118 7 C -0.128 4.128 8 C -0.023 4.023 9 C 0.007 3.993 10 C -0.326 4.326 11 C -0.009 4.009 12 N -0.293 5.293 13 C 0.127 3.873 14 C -0.504 4.504 15 H 0.099 0.901 16 C -0.178 4.178 17 N -0.425 5.425 18 Si 0.991 3.009 19 H -0.267 1.267 20 H -0.206 1.206 21 H -0.221 1.221 22 C -0.263 4.263 23 C -0.129 4.129 24 C -0.133 4.133 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.143 0.857 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.321 15.671 -2.212 18.367 hybrid contribution -0.600 3.156 1.309 3.469 sum 8.721 18.827 -0.903 20.768 Atomic orbital electron populations 1.22483 0.87154 1.03110 1.00109 1.61993 1.08367 1.13295 1.42947 1.22392 1.00758 0.88821 1.00425 1.21034 1.00179 0.90395 0.91416 1.19603 0.95396 0.94470 0.99878 1.20846 0.99382 0.93065 0.98546 1.21270 0.96590 0.95248 0.99733 1.19025 0.93947 0.92938 0.96439 1.18707 0.94333 0.90467 0.95775 1.21187 1.02758 0.94978 1.13717 1.22048 0.92209 0.92979 0.93655 1.66505 1.06481 1.37553 1.18774 1.18597 0.91848 0.88628 0.88278 1.20792 1.01035 0.95205 1.33344 0.90087 1.27861 0.99352 0.98696 0.91940 1.70657 1.05454 1.41268 1.25082 0.81795 0.71298 0.69351 0.78465 1.26673 1.20638 1.22146 1.21742 0.98307 0.96770 1.09493 1.21284 0.99729 0.92962 0.98916 1.20890 0.96353 0.95405 1.00630 0.95762 0.91540 0.90494 0.91356 0.91329 0.95785 0.94141 0.90097 0.86283 0.85634 0.87498 0.85305 0.90614 0.87434 0.85664 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.13 60.07 0.55 0.74 16 2 N -0.54 -5.59 5.01 -252.71 -1.27 -6.86 16 3 C 0.02 0.19 9.57 60.07 0.57 0.76 16 4 C 0.10 1.00 5.11 -4.98 -0.03 0.97 16 5 C -0.09 -1.18 4.89 -104.56 -0.51 -1.69 16 6 C -0.10 -1.33 9.68 -39.63 -0.38 -1.71 16 7 C -0.11 -1.69 9.45 -39.25 -0.37 -2.06 16 8 C -0.02 -0.41 5.88 -104.90 -0.62 -1.03 16 9 C 0.01 0.27 5.90 -104.65 -0.62 -0.35 16 10 C -0.30 -6.17 9.52 -38.81 -0.37 -6.54 16 11 C 0.15 3.32 11.17 -17.60 -0.20 3.12 16 12 N -0.57 -14.58 4.54 -11.20 -0.05 -14.63 16 13 C 0.25 6.50 6.39 -85.02 -0.54 5.96 16 14 C -0.47 -12.87 9.58 -37.70 -0.36 -13.23 16 15 H 0.08 2.19 8.05 -52.49 -0.42 1.77 16 16 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 17 N -0.80 -21.95 13.65 55.55 0.76 -21.19 16 18 Si 1.16 28.56 25.56 -169.99 -4.34 24.22 16 19 H -0.33 -8.13 7.11 56.52 0.40 -7.72 16 20 H -0.28 -6.84 6.67 56.52 0.38 -6.47 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 C -0.24 -5.61 9.22 -38.34 -0.35 -5.97 16 23 C -0.11 -1.78 9.45 -39.25 -0.37 -2.15 16 24 C -0.11 -1.54 7.95 -39.63 -0.31 -1.86 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 27 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 29 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.78 6.29 -52.49 -0.33 1.45 16 35 H 0.11 1.84 6.32 -52.49 -0.33 1.51 16 36 H 0.13 2.38 8.06 -52.49 -0.42 1.95 16 37 H 0.28 7.37 8.72 -40.82 -0.36 7.01 16 38 H 0.11 2.34 6.33 -52.48 -0.33 2.01 16 39 H 0.13 2.00 6.29 -52.48 -0.33 1.67 16 40 H 0.11 1.31 8.03 -52.48 -0.42 0.89 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -29.27 327.07 -9.44 -38.71 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.46 Total: -1.21 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -4.01 Total: -23.96 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.56 Total: -42.68 kcal Atomic # 14 Polarization: 28.56 SS G_CDS: -4.34 Total: 24.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.27 -9.44 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204642415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.094 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds