Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 111.00052 * 2 1 4 4 C 1.46896 * 111.00207 * 123.95388 * 2 1 3 5 5 C 1.50701 * 109.47391 * 169.99764 * 4 2 1 6 6 C 1.38407 * 119.84433 * 89.99773 * 5 4 2 7 7 C 1.37924 * 120.14686 * 180.27795 * 6 5 4 8 8 C 1.39670 * 119.84972 * 359.47720 * 7 6 5 9 9 C 1.47846 * 120.14942 * 180.24633 * 8 7 6 10 10 C 1.39307 * 120.77634 * 129.97529 * 9 8 7 11 11 N 1.31678 * 120.65687 * 179.67923 * 10 9 8 12 12 C 1.32201 * 122.50469 * 0.63811 * 11 10 9 13 13 C 1.36496 * 121.50730 * 359.65489 * 12 11 10 14 14 C 1.41113 * 119.10052 * 0.02562 * 13 12 11 15 15 C 1.40943 * 121.10197 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99777 * 154.59112 * 15 14 13 17 17 C 1.40180 * 120.00269 * 334.59658 * 15 14 13 18 18 N 1.30680 * 119.99744 * 344.37226 * 17 15 14 19 19 Si 1.86796 * 119.99814 * 164.36811 * 17 15 14 20 20 H 1.48496 * 109.47212 * 60.00110 * 19 17 15 21 21 H 1.48507 * 109.46694 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47411 * 299.99754 * 19 17 15 23 23 C 1.39671 * 119.69599 * 0.50363 * 8 7 6 24 24 C 1.37924 * 119.84762 * 359.74596 * 23 8 7 25 25 H 1.08997 * 109.47195 * 296.04290 * 1 2 3 26 26 H 1.08994 * 109.47709 * 56.04939 * 1 2 3 27 27 H 1.09002 * 109.47240 * 176.04819 * 1 2 3 28 28 H 1.09001 * 109.47068 * 183.95916 * 3 2 1 29 29 H 1.09003 * 109.46733 * 303.95718 * 3 2 1 30 30 H 1.09000 * 109.46941 * 63.95357 * 3 2 1 31 31 H 1.09002 * 109.47149 * 49.99973 * 4 2 1 32 32 H 1.09001 * 109.47243 * 289.99942 * 4 2 1 33 33 H 1.07991 * 119.92455 * 0.02562 * 6 5 4 34 34 H 1.08001 * 120.07007 * 179.72084 * 7 6 5 35 35 H 1.07996 * 119.67008 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.25006 * 179.67251 * 12 11 10 37 37 H 1.07996 * 120.44876 * 180.02562 * 13 12 11 38 38 H 0.97000 * 119.99894 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.07722 * 179.77367 * 23 8 7 40 40 H 1.08000 * 119.92036 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 3.4817 -0.9525 0.9728 6 6 4.3557 -0.0153 1.4958 7 6 5.7170 -0.1769 1.3437 8 6 6.2133 -1.2950 0.6696 9 6 7.6714 -1.4776 0.5074 10 6 8.2798 -2.6859 0.8399 11 7 9.5778 -2.8481 0.6886 12 6 10.3653 -1.8887 0.2334 13 6 9.8707 -0.6654 -0.1156 14 6 8.4868 -0.4221 0.0141 15 6 7.9312 0.8257 -0.3334 16 1 6.8934 0.8923 -0.6252 17 6 8.7254 1.9803 -0.3003 18 7 9.8695 1.9685 0.3311 19 14 8.1485 3.5357 -1.1590 20 1 6.8552 3.9730 -0.5747 21 1 9.1610 4.6065 -0.9763 22 1 7.9704 3.2642 -2.6081 23 6 5.3256 -2.2369 0.1447 24 6 3.9665 -2.0603 0.2995 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0710 29 1 1.5897 1.9163 -0.8524 30 1 1.7043 1.8724 0.9233 31 1 1.5090 -1.7406 1.1756 32 1 1.7975 -0.2247 2.0628 33 1 3.9708 0.8464 2.0206 34 1 6.3977 0.5574 1.7484 35 1 7.6803 -3.4993 1.2210 36 1 11.4242 -2.0774 0.1351 37 1 10.5297 0.1059 -0.4861 38 1 10.4189 2.7675 0.3543 39 1 5.7025 -3.1019 -0.3809 40 1 3.2790 -2.7881 -0.1055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204654390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = 47.291449 kcal Electronic energy + Delta-G solvation = -21350.792043 eV Core-core repulsion = 18322.484464 eV Total energy + Delta-G solvation = -3028.307579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.21267 -38.16176 -36.65790 -34.25135 -32.33890 -30.54714 -30.12377 -29.14514 -27.53087 -26.51418 -25.60778 -22.65110 -22.22301 -21.18971 -21.10234 -19.81500 -17.66576 -15.98699 -15.65733 -15.39961 -15.35759 -15.12409 -14.57658 -14.45032 -13.93935 -13.83922 -13.11682 -12.82834 -12.66054 -12.44174 -12.32459 -12.22796 -12.09042 -11.76481 -11.62123 -11.49336 -11.45268 -11.29952 -11.00744 -10.67343 -10.39224 -10.34341 -9.78648 -9.51412 -8.54988 -8.29557 -8.23734 -8.01535 -7.87399 -7.31031 -6.92214 -4.65778 1.79009 2.11992 2.71351 2.83177 2.96047 2.99230 3.20169 3.77646 4.02875 4.55460 4.58830 5.03137 5.12503 5.24929 5.33607 5.49503 5.55097 5.57054 5.60484 5.71268 5.73016 5.75424 5.79595 5.93820 6.08002 6.15586 6.29069 6.33341 6.67770 6.71691 6.80448 6.85215 6.98106 7.01698 7.04935 7.10133 7.21622 7.32048 7.36781 7.53535 7.67621 7.83316 8.03269 8.37307 8.62609 8.66861 9.57645 9.94204 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.005822 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.090759 B = 4808.582713 C = 6432.896299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.020 3.980 4 C 0.101 3.899 5 C -0.110 4.110 6 C -0.118 4.118 7 C -0.099 4.099 8 C 0.027 3.973 9 C -0.235 4.235 10 C 0.129 3.871 11 N -0.579 5.579 12 C 0.081 3.919 13 C -0.209 4.209 14 C 0.146 3.854 15 C -0.440 4.440 16 H 0.087 0.913 17 C 0.078 3.922 18 N -0.779 5.779 19 Si 0.909 3.091 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.131 4.131 24 C -0.101 4.101 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.286 0.714 39 H 0.114 0.886 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 0.634 0.341 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.128 4.128 4 C -0.026 4.026 5 C -0.111 4.111 6 C -0.137 4.137 7 C -0.118 4.118 8 C 0.026 3.974 9 C -0.241 4.241 10 C -0.029 4.029 11 N -0.293 5.293 12 C -0.066 4.066 13 C -0.231 4.231 14 C 0.138 3.862 15 C -0.470 4.470 16 H 0.105 0.895 17 C -0.143 4.143 18 N -0.403 5.403 19 Si 0.732 3.268 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.149 4.149 24 C -0.119 4.119 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.543 -0.236 0.191 11.547 hybrid contribution -0.766 2.120 0.137 2.259 sum -12.310 1.884 0.328 12.457 Atomic orbital electron populations 1.22376 0.87799 1.01990 1.00189 1.61997 1.07025 1.14240 1.43277 1.22476 1.02298 0.88233 0.99771 1.20981 0.92534 0.98038 0.91022 1.19462 0.93607 0.96313 1.01684 1.20846 0.93457 0.98325 1.01048 1.21365 0.94331 0.97785 0.98279 1.18708 0.92415 0.92857 0.93459 1.19567 0.92099 0.97826 1.14583 1.22087 0.90913 0.94156 0.95790 1.67313 1.05430 1.33974 1.22574 1.21721 0.97767 0.90355 0.96806 1.21909 0.96837 0.97442 1.06894 1.17729 0.91081 0.91409 0.86000 1.19594 0.98234 0.90839 1.38364 0.89503 1.26024 0.94044 1.01265 0.92947 1.69733 1.10451 1.30769 1.29383 0.86332 0.79663 0.79716 0.81045 1.18593 1.20123 1.18516 1.21264 0.92669 0.99846 1.01152 1.20695 0.94934 0.97365 0.98924 0.96001 0.91538 0.91524 0.90162 0.91796 0.95969 0.90533 0.94558 0.87467 0.85550 0.86126 0.86460 0.85691 0.90317 0.86761 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.06 0.57 0.82 16 2 N -0.54 -6.98 5.01 -252.72 -1.27 -8.25 16 3 C 0.02 0.26 9.13 60.07 0.55 0.81 16 4 C 0.10 1.31 5.11 -4.98 -0.03 1.29 16 5 C -0.11 -1.73 4.89 -104.50 -0.51 -2.24 16 6 C -0.12 -2.00 7.94 -39.63 -0.31 -2.32 16 7 C -0.10 -1.98 8.06 -39.16 -0.32 -2.30 16 8 C 0.03 0.56 5.00 -104.90 -0.52 0.03 16 9 C -0.24 -5.56 5.54 -104.05 -0.58 -6.14 16 10 C 0.13 2.97 10.72 -17.22 -0.18 2.79 16 11 N -0.58 -14.02 10.32 -13.36 -0.14 -14.15 16 12 C 0.08 1.94 11.09 -18.02 -0.20 1.74 16 13 C -0.21 -5.25 8.72 -39.12 -0.34 -5.59 16 14 C 0.15 3.70 5.59 -106.26 -0.59 3.11 16 15 C -0.44 -10.87 7.28 -37.83 -0.28 -11.15 16 16 H 0.09 2.13 6.69 -52.48 -0.35 1.77 16 17 C 0.08 1.83 5.21 -17.31 -0.09 1.74 16 18 N -0.78 -18.79 10.95 55.56 0.61 -18.18 16 19 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.13 -2.42 9.56 -39.16 -0.37 -2.79 16 24 C -0.10 -1.64 9.68 -39.64 -0.38 -2.02 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 28 H 0.08 1.18 6.16 -51.93 -0.32 0.86 16 29 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.89 8.00 -51.93 -0.42 0.48 16 32 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 33 H 0.11 1.61 8.03 -52.49 -0.42 1.19 16 34 H 0.13 2.70 7.34 -52.49 -0.39 2.31 16 35 H 0.12 2.47 8.05 -52.49 -0.42 2.05 16 36 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 37 H 0.13 3.17 6.27 -52.49 -0.33 2.85 16 38 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 39 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -26.80 331.99 -9.99 -36.79 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.58 Total: 8.36 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -3.59 Total: -22.23 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -0.80 Total: -40.58 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.80 -9.99 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204654390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.077 kcal (2) G-P(sol) polarization free energy of solvation -26.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds