Wall clock time and date at job start Tue Mar 31 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 110.99993 * 2 1 4 4 C 1.46905 * 110.99895 * 123.95149 * 2 1 3 5 5 C 1.50697 * 109.47131 * 66.04130 * 4 2 1 6 6 C 1.38408 * 119.84184 * 90.00618 * 5 4 2 7 7 C 1.37914 * 120.15074 * 180.02562 * 6 5 4 8 8 C 1.39680 * 119.84770 * 359.97438 * 7 6 5 9 9 C 1.47819 * 120.15604 * 180.02562 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97477 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02577 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94040 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00273 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99825 * 0.02562 * 15 14 13 18 18 N 1.30698 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46977 * 119.99826 * 19 17 15 22 22 H 1.48501 * 109.47370 * 240.00208 * 19 17 15 23 23 C 1.39688 * 119.69584 * 0.27426 * 8 7 6 24 24 C 1.37919 * 119.84323 * 359.47227 * 23 8 7 25 25 H 1.09005 * 109.47444 * 296.04912 * 1 2 3 26 26 H 1.09000 * 109.47203 * 56.05083 * 1 2 3 27 27 H 1.08998 * 109.47280 * 176.05068 * 1 2 3 28 28 H 1.09003 * 109.47114 * 183.95386 * 3 2 1 29 29 H 1.08996 * 109.46962 * 303.94584 * 3 2 1 30 30 H 1.08994 * 109.47371 * 63.95309 * 3 2 1 31 31 H 1.09006 * 109.46763 * 306.04340 * 4 2 1 32 32 H 1.08995 * 109.47413 * 186.04646 * 4 2 1 33 33 H 1.07994 * 119.92817 * 359.96919 * 6 5 4 34 34 H 1.08001 * 120.07498 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.76107 * 0.04170 * 10 9 8 36 36 H 1.07996 * 120.13647 * 180.02562 * 11 10 9 37 37 H 1.08007 * 119.33144 * 180.29683 * 12 11 10 38 38 H 0.96997 * 120.00557 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.08032 * 179.72985 * 23 8 7 40 40 H 1.08004 * 119.92444 * 180.23319 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6368 -2.2204 0.9730 6 6 2.4972 -3.0699 0.2995 7 6 2.1751 -4.4019 0.1447 8 6 0.9777 -4.8932 0.6699 9 6 0.6259 -6.3198 0.5085 10 6 0.6877 -6.9308 -0.7461 11 6 0.3480 -8.2687 -0.8459 12 6 -0.0423 -8.9676 0.2911 13 7 -0.0972 -8.3843 1.4659 14 6 0.2190 -7.0950 1.6241 15 6 0.1470 -6.5052 2.9008 16 1 0.4026 -5.4639 3.0299 17 6 -0.2555 -7.2699 4.0043 18 7 -0.5643 -8.5302 3.8483 19 14 -0.3504 -6.4878 5.6980 20 1 0.0470 -5.0598 5.6068 21 1 -1.7413 -6.5823 6.2096 22 1 0.5671 -7.1993 6.6239 23 6 0.1116 -4.0290 1.3440 24 6 0.4487 -2.7004 1.4961 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5899 1.9162 -0.8525 30 1 1.7044 1.8723 0.9232 31 1 1.5610 -0.3871 2.0629 32 1 3.0796 -0.6611 1.1758 33 1 3.4225 -2.6887 -0.1065 34 1 2.8472 -5.0637 -0.3814 35 1 0.9939 -6.3721 -1.6181 36 1 0.3867 -8.7681 -1.8027 37 1 -0.3014 -10.0128 0.2067 38 1 -0.8425 -9.0596 4.6120 39 1 -0.8180 -4.4013 1.7488 40 1 -0.2182 -2.0319 2.0203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204654768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:24 Heat of formation + Delta-G solvation = 59.681740 kcal Electronic energy + Delta-G solvation = -21260.658129 eV Core-core repulsion = 18232.887833 eV Total energy + Delta-G solvation = -3027.770295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.20520 -38.04191 -36.64570 -33.73427 -32.37088 -30.61408 -30.09542 -29.32304 -27.57026 -26.43998 -25.45364 -22.68838 -22.20362 -21.14082 -21.07103 -19.83012 -17.54373 -16.05954 -15.70913 -15.41743 -15.33174 -15.12663 -14.42193 -14.36289 -13.91871 -13.85235 -13.16772 -12.81834 -12.57962 -12.42260 -12.33703 -12.07221 -11.87702 -11.75975 -11.65970 -11.47127 -11.25324 -11.14723 -11.01193 -10.72452 -10.36407 -10.24993 -9.83285 -9.46781 -8.58343 -8.36102 -8.21332 -7.98163 -7.63356 -7.25639 -6.49470 -4.57310 1.80868 2.10687 2.71098 2.99452 3.04593 3.09482 3.17473 3.88156 4.01066 4.57280 4.68518 5.01887 5.10171 5.23671 5.31261 5.48984 5.53576 5.58426 5.66942 5.72016 5.73401 5.83656 5.87359 6.00419 6.07647 6.13325 6.23072 6.30913 6.50216 6.67000 6.72439 6.83420 6.94047 6.96298 7.02805 7.10497 7.20120 7.29984 7.35734 7.53574 7.70455 7.77618 7.99589 8.19465 8.56741 8.86154 10.02590 10.21086 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.005174 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.123846 B = 5410.834002 C = 6718.312299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.101 3.899 5 C -0.112 4.112 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.031 3.969 9 C -0.238 4.238 10 C -0.033 4.033 11 C -0.321 4.321 12 C 0.132 3.868 13 N -0.483 5.483 14 C 0.268 3.732 15 C -0.420 4.420 16 H 0.095 0.905 17 C 0.068 3.932 18 N -0.708 5.708 19 Si 0.902 3.098 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.271 1.271 23 C -0.110 4.110 24 C -0.115 4.115 25 H 0.022 0.978 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.274 0.726 39 H 0.126 0.874 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 12.502 -2.972 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.026 4.026 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.150 4.150 8 C 0.030 3.970 9 C -0.243 4.243 10 C -0.057 4.057 11 C -0.344 4.344 12 C -0.037 4.037 13 N -0.194 5.194 14 C 0.145 3.855 15 C -0.450 4.450 16 H 0.113 0.887 17 C -0.158 4.158 18 N -0.329 5.329 19 Si 0.726 3.274 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.128 4.128 24 C -0.134 4.134 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.344 11.655 -2.493 12.147 hybrid contribution -0.052 1.043 0.653 1.231 sum 2.293 12.697 -1.840 13.033 Atomic orbital electron populations 1.22461 0.87303 1.03169 0.99779 1.62008 1.08268 1.12941 1.43363 1.22378 1.00670 0.89141 1.00194 1.20982 0.99764 0.90854 0.90994 1.19437 0.96054 0.94003 1.01804 1.20698 0.98949 0.93222 0.98855 1.21241 0.96857 0.95020 1.01917 1.18735 0.92272 0.92521 0.93514 1.19396 1.17102 0.92850 0.94930 1.20893 0.95467 0.94095 0.95237 1.21224 1.18318 0.96028 0.98871 1.22611 0.93488 0.98375 0.89205 1.68767 1.18506 1.10342 1.21819 1.18529 0.87673 0.87511 0.91804 1.19877 1.36275 0.98152 0.90728 0.88707 1.26156 0.93817 0.94625 1.01223 1.70125 1.24867 1.06379 1.31479 0.86331 0.78798 0.80825 0.81428 1.18078 1.19669 1.19660 1.21356 1.00089 0.92243 0.99078 1.20830 0.96275 0.95604 1.00698 0.95936 0.91850 0.90317 0.91501 0.91552 0.95951 0.94475 0.90498 0.87133 0.86873 0.88532 0.88705 0.86394 0.91483 0.85612 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.13 60.06 0.55 0.80 16 2 N -0.54 -6.75 5.01 -252.72 -1.27 -8.02 16 3 C 0.02 0.24 9.57 60.06 0.57 0.81 16 4 C 0.10 1.32 5.11 -4.97 -0.03 1.29 16 5 C -0.11 -1.79 4.89 -104.50 -0.51 -2.30 16 6 C -0.10 -1.64 9.68 -39.64 -0.38 -2.02 16 7 C -0.13 -2.49 9.55 -39.16 -0.37 -2.87 16 8 C 0.03 0.65 5.02 -104.90 -0.53 0.12 16 9 C -0.24 -5.71 5.53 -104.07 -0.58 -6.29 16 10 C -0.03 -0.73 9.67 -38.98 -0.38 -1.11 16 11 C -0.32 -7.14 10.10 -39.22 -0.40 -7.54 16 12 C 0.13 3.16 11.17 -17.48 -0.20 2.96 16 13 N -0.48 -13.14 7.85 -10.91 -0.09 -13.23 16 14 C 0.27 7.16 6.56 -84.71 -0.56 6.60 16 15 C -0.42 -10.91 7.97 -37.89 -0.30 -11.22 16 16 H 0.10 2.35 5.25 -52.49 -0.28 2.07 16 17 C 0.07 1.70 5.50 -17.32 -0.10 1.60 16 18 N -0.71 -18.46 11.46 55.56 0.64 -17.83 16 19 Si 0.90 18.32 29.56 -169.99 -5.02 13.29 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.11 -2.18 7.57 -39.16 -0.30 -2.48 16 24 C -0.12 -1.96 7.94 -39.64 -0.31 -2.27 16 25 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 28 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 32 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.11 2.04 8.05 -52.49 -0.42 1.62 16 35 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 38 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 39 H 0.13 2.60 7.26 -52.48 -0.38 2.22 16 40 H 0.11 1.61 8.03 -52.48 -0.42 1.19 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -28.53 332.15 -10.13 -38.66 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.59 Total: 6.01 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.81 Total: -23.89 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.72 Total: -39.07 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.53 -10.13 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204654768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.338 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds