Wall clock time and date at job start Tue Mar 31 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 110.99993 * 2 1 4 4 C 1.46905 * 110.99895 * 123.95149 * 2 1 3 5 5 C 1.50697 * 109.47131 * 66.04130 * 4 2 1 6 6 C 1.38408 * 119.84184 * 90.00618 * 5 4 2 7 7 C 1.37914 * 120.15074 * 180.02562 * 6 5 4 8 8 C 1.39680 * 119.84770 * 359.97438 * 7 6 5 9 9 C 1.47819 * 120.15604 * 180.02562 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97477 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02577 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94040 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00273 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99825 * 0.02562 * 15 14 13 18 18 N 1.30698 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46977 * 119.99826 * 19 17 15 22 22 H 1.48501 * 109.47370 * 240.00208 * 19 17 15 23 23 C 1.39688 * 119.69584 * 0.27426 * 8 7 6 24 24 C 1.37919 * 119.84323 * 359.47227 * 23 8 7 25 25 H 1.09005 * 109.47444 * 296.04912 * 1 2 3 26 26 H 1.09000 * 109.47203 * 56.05083 * 1 2 3 27 27 H 1.08998 * 109.47280 * 176.05068 * 1 2 3 28 28 H 1.09003 * 109.47114 * 183.95386 * 3 2 1 29 29 H 1.08996 * 109.46962 * 303.94584 * 3 2 1 30 30 H 1.08994 * 109.47371 * 63.95309 * 3 2 1 31 31 H 1.09006 * 109.46763 * 306.04340 * 4 2 1 32 32 H 1.08995 * 109.47413 * 186.04646 * 4 2 1 33 33 H 1.07994 * 119.92817 * 359.96919 * 6 5 4 34 34 H 1.08001 * 120.07498 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.76107 * 0.04170 * 10 9 8 36 36 H 1.07996 * 120.13647 * 180.02562 * 11 10 9 37 37 H 1.08007 * 119.33144 * 180.29683 * 12 11 10 38 38 H 0.96997 * 120.00557 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.08032 * 179.72985 * 23 8 7 40 40 H 1.08004 * 119.92444 * 180.23319 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6368 -2.2204 0.9730 6 6 2.4972 -3.0699 0.2995 7 6 2.1751 -4.4019 0.1447 8 6 0.9777 -4.8932 0.6699 9 6 0.6259 -6.3198 0.5085 10 6 0.6877 -6.9308 -0.7461 11 6 0.3480 -8.2687 -0.8459 12 6 -0.0423 -8.9676 0.2911 13 7 -0.0972 -8.3843 1.4659 14 6 0.2190 -7.0950 1.6241 15 6 0.1470 -6.5052 2.9008 16 1 0.4026 -5.4639 3.0299 17 6 -0.2555 -7.2699 4.0043 18 7 -0.5643 -8.5302 3.8483 19 14 -0.3504 -6.4878 5.6980 20 1 0.0470 -5.0598 5.6068 21 1 -1.7413 -6.5823 6.2096 22 1 0.5671 -7.1993 6.6239 23 6 0.1116 -4.0290 1.3440 24 6 0.4487 -2.7004 1.4961 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5899 1.9162 -0.8525 30 1 1.7044 1.8723 0.9232 31 1 1.5610 -0.3871 2.0629 32 1 3.0796 -0.6611 1.1758 33 1 3.4225 -2.6887 -0.1065 34 1 2.8472 -5.0637 -0.3814 35 1 0.9939 -6.3721 -1.6181 36 1 0.3867 -8.7681 -1.8027 37 1 -0.3014 -10.0128 0.2067 38 1 -0.8425 -9.0596 4.6120 39 1 -0.8180 -4.4013 1.7488 40 1 -0.2182 -2.0319 2.0203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204654768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:23 Heat of formation + Delta-G solvation = 44.352329 kcal Electronic energy + Delta-G solvation = -21261.322862 eV Core-core repulsion = 18232.887833 eV Total energy + Delta-G solvation = -3028.435029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69594 -39.61213 -37.78806 -35.57430 -33.89265 -32.32169 -31.62990 -30.83647 -28.41605 -27.99034 -26.98207 -24.09180 -23.71680 -22.79355 -22.38973 -21.29070 -19.40028 -17.63457 -17.29718 -16.51967 -16.44228 -16.33167 -16.08561 -15.98873 -15.28159 -15.10877 -14.70114 -14.24634 -14.17699 -14.01753 -13.55295 -13.35798 -13.18407 -13.01011 -12.91059 -12.76617 -12.70147 -12.55958 -12.47266 -12.24942 -11.88788 -11.70799 -11.48865 -11.26505 -10.27143 -9.78846 -9.64105 -9.50302 -9.27839 -8.90011 -8.32415 -6.47663 0.30482 0.68084 0.95961 1.25273 1.37091 1.50452 1.52037 2.19258 2.81423 2.89988 3.35308 3.90600 3.93727 4.06881 4.14940 4.26218 4.31830 4.34501 4.42928 4.50853 4.52565 4.64237 4.69082 4.74527 4.79100 4.83501 4.91437 4.99818 5.05955 5.08767 5.18154 5.24751 5.31514 5.41276 5.64039 5.69378 5.77925 5.84478 6.04317 6.07634 6.16350 6.18554 6.27646 6.33371 6.71095 6.97772 8.16566 8.40726 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.005174 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.123846 B = 5410.834002 C = 6718.312299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.557 5.557 3 C 0.025 3.975 4 C 0.103 3.897 5 C -0.100 4.100 6 C -0.096 4.096 7 C -0.136 4.136 8 C -0.003 4.003 9 C -0.242 4.242 10 C -0.044 4.044 11 C -0.312 4.312 12 C 0.107 3.893 13 N -0.522 5.522 14 C 0.236 3.764 15 C -0.450 4.450 16 H 0.097 0.903 17 C 0.025 3.975 18 N -0.751 5.751 19 Si 0.976 3.024 20 H -0.253 1.253 21 H -0.264 1.264 22 H -0.266 1.266 23 C -0.123 4.123 24 C -0.112 4.112 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.279 0.721 39 H 0.105 0.895 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 15.304 -3.271 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.281 5.281 3 C -0.123 4.123 4 C -0.024 4.024 5 C -0.100 4.100 6 C -0.114 4.114 7 C -0.154 4.154 8 C -0.004 4.004 9 C -0.247 4.247 10 C -0.068 4.068 11 C -0.335 4.335 12 C -0.059 4.059 13 N -0.234 5.234 14 C 0.112 3.888 15 C -0.480 4.480 16 H 0.115 0.885 17 C -0.197 4.197 18 N -0.372 5.372 19 Si 0.796 3.204 20 H -0.176 1.176 21 H -0.188 1.188 22 H -0.190 1.190 23 C -0.141 4.141 24 C -0.130 4.130 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.157 0.843 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.456 14.452 -2.827 15.126 hybrid contribution -0.356 0.278 0.570 0.727 sum 3.100 14.729 -2.257 15.220 Atomic orbital electron populations 1.22444 0.87273 1.02145 1.00839 1.61979 1.08483 1.14647 1.42957 1.22436 1.01244 0.87567 1.01035 1.20987 1.00913 0.88731 0.91730 1.19825 0.94823 0.95789 0.99569 1.21008 0.99988 0.92193 0.98233 1.21331 0.96042 0.96288 1.01781 1.18748 0.94068 0.91489 0.96045 1.19757 1.15741 0.94367 0.94835 1.21254 0.95401 0.94535 0.95653 1.21568 1.16281 0.96071 0.99606 1.23042 0.94060 0.99537 0.89272 1.68694 1.19955 1.11181 1.23585 1.18976 0.88671 0.87979 0.93201 1.20109 1.37892 0.98546 0.91455 0.88518 1.27022 0.92902 0.94932 1.04893 1.70218 1.26300 1.07841 1.32877 0.85242 0.79081 0.79822 0.76248 1.17643 1.18815 1.19029 1.21255 0.99548 0.93606 0.99717 1.21021 0.97112 0.94494 1.00402 0.95099 0.90595 0.92396 0.90537 0.90584 0.95193 0.93670 0.88832 0.84261 0.86462 0.85928 0.85468 0.84483 0.90981 0.87730 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.13 127.69 1.17 1.61 16 2 N -0.56 -11.94 5.01 -953.48 -4.78 -16.72 16 3 C 0.02 0.38 9.57 127.69 1.22 1.61 16 4 C 0.10 2.32 5.11 85.56 0.44 2.76 16 5 C -0.10 -2.91 4.89 -19.79 -0.10 -3.01 16 6 C -0.10 -2.94 9.68 22.23 0.22 -2.73 16 7 C -0.14 -5.02 9.55 22.54 0.22 -4.81 16 8 C 0.00 -0.11 5.02 -20.04 -0.10 -0.21 16 9 C -0.24 -11.97 5.53 -19.51 -0.11 -12.07 16 10 C -0.04 -1.99 9.67 22.66 0.22 -1.77 16 11 C -0.31 -13.79 10.10 22.50 0.23 -13.56 16 12 C 0.11 5.26 11.17 84.97 0.95 6.21 16 13 N -0.52 -29.61 7.85 -188.43 -1.48 -31.09 16 14 C 0.24 13.14 6.56 40.38 0.26 13.41 16 15 C -0.45 -24.37 7.97 23.37 0.19 -24.18 16 16 H 0.10 5.00 5.25 -2.91 -0.02 4.98 16 17 C 0.02 1.28 5.50 85.33 0.47 1.75 16 18 N -0.75 -40.79 11.46 21.86 0.25 -40.54 16 19 Si 0.98 38.43 29.56 68.60 2.03 40.45 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.12 -4.98 7.57 22.54 0.17 -4.81 16 24 C -0.11 -3.66 7.94 22.23 0.18 -3.49 16 25 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 27 H 0.06 1.45 6.16 -2.39 -0.01 1.44 16 28 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 29 H 0.08 1.03 8.12 -2.39 -0.02 1.02 16 30 H 0.03 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.96 8.06 -2.38 -0.02 0.94 16 32 H 0.09 1.82 8.00 -2.39 -0.02 1.80 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.12 4.12 8.05 -2.91 -0.02 4.10 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.14 5.93 8.06 -2.91 -0.02 5.91 16 38 H 0.28 13.67 8.29 -92.71 -0.77 12.90 16 39 H 0.10 4.58 7.26 -2.91 -0.02 4.56 16 40 H 0.13 3.60 8.03 -2.91 -0.02 3.57 16 Total: -1.00 -63.98 332.15 2.66 -61.32 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 1.02 Total: 29.88 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 5.61 Total: -43.31 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -6.01 Total: -88.34 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.45 kcal Total: -63.98 2.66 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204654768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.673 kcal (2) G-P(sol) polarization free energy of solvation -63.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds