Wall clock time and date at job start Tue Mar 31 2020 07:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46816 * 2 1 4 4 C 1.53006 * 109.46816 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.46722 * 175.45219 * 4 3 2 6 6 C 1.46906 * 110.99815 * 199.76263 * 5 4 3 7 7 C 1.50696 * 109.47059 * 66.04340 * 6 5 4 8 8 H 1.07996 * 120.00312 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99922 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99541 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99987 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47322 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47135 * 120.00667 * 11 9 7 14 14 H 1.48501 * 109.46981 * 240.00277 * 11 9 7 15 15 C 1.46901 * 111.00674 * 75.80780 * 5 4 3 16 16 C 1.50698 * 109.47682 * 198.77789 * 15 5 4 17 17 S 1.76191 * 126.03423 * 264.43285 * 16 15 5 18 18 C 1.70976 * 90.28033 * 179.97438 * 17 16 15 19 19 C 1.50706 * 124.91892 * 180.02562 * 18 17 16 20 20 N 1.29029 * 110.16920 * 0.34798 * 18 17 16 21 21 C 1.31781 * 117.12073 * 359.72403 * 20 18 17 22 22 C 1.50699 * 122.74700 * 180.02562 * 21 20 18 23 23 H 1.08992 * 109.47162 * 299.99893 * 1 2 3 24 24 H 1.09002 * 109.47074 * 60.00242 * 1 2 3 25 25 H 1.09007 * 109.46956 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46768 * 239.99888 * 2 1 3 27 27 H 1.09002 * 109.47074 * 119.99758 * 2 1 3 28 28 H 1.09001 * 109.46988 * 59.99866 * 3 2 1 29 29 H 1.09002 * 109.47102 * 299.99741 * 3 2 1 30 30 H 1.08997 * 109.47330 * 55.45006 * 4 3 2 31 31 H 1.08999 * 109.46661 * 295.45051 * 4 3 2 32 32 H 1.09002 * 109.46824 * 186.04730 * 6 5 4 33 33 H 1.09006 * 109.46986 * 306.04157 * 6 5 4 34 34 H 0.97005 * 119.99676 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46489 * 318.77973 * 15 5 4 36 36 H 1.09003 * 109.47102 * 78.77173 * 15 5 4 37 37 H 1.09004 * 109.47009 * 270.29088 * 19 18 17 38 38 H 1.09002 * 109.46928 * 30.28711 * 19 18 17 39 39 H 1.08994 * 109.47251 * 150.29122 * 19 18 17 40 40 H 1.08991 * 109.47164 * 273.17861 * 22 21 20 41 41 H 1.08993 * 109.47368 * 33.18521 * 22 21 20 42 42 H 1.09010 * 109.46853 * 153.17967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8231 -0.1092 6 6 5.4522 2.8522 -0.5761 7 6 5.5189 2.3346 -1.9898 8 1 4.6171 2.0162 -2.4914 9 6 6.7312 2.2684 -2.6433 10 7 7.8294 2.6566 -2.0325 11 14 6.8138 1.6274 -4.3959 12 1 5.4501 1.2572 -4.8524 13 1 7.3641 2.6830 -5.2836 14 1 7.6932 0.4317 -4.4447 15 6 3.9176 3.5354 1.1677 16 6 3.9812 5.0212 0.9241 17 16 5.4157 6.0343 1.0661 18 6 4.4993 7.4083 0.6240 19 6 5.0464 8.8072 0.5015 20 7 3.2700 7.0754 0.4169 21 6 2.9581 5.8041 0.5690 22 6 1.5622 5.2765 0.3591 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9338 0.8596 -0.8455 31 1 3.9329 1.0011 0.9288 32 1 5.8241 3.8764 -0.5462 33 1 6.0653 2.2241 0.0702 34 1 8.6823 2.6104 -2.4923 35 1 2.9588 3.2821 1.6202 36 1 4.7249 3.2423 1.8390 37 1 4.9641 9.3150 1.4626 38 1 6.0937 8.7629 0.2026 39 1 4.4772 9.3556 -0.2490 40 1 0.9945 5.3725 1.2845 41 1 1.0722 5.8485 -0.4287 42 1 1.6104 4.2267 0.0695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206171283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:34 Heat of formation + Delta-G solvation = 21.412088 kcal Electronic energy + Delta-G solvation = -20413.568126 eV Core-core repulsion = 17519.582285 eV Total energy + Delta-G solvation = -2893.985841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.52611 -37.27775 -34.42942 -33.04453 -32.24767 -29.47005 -28.94121 -28.27505 -26.14440 -23.81542 -22.94943 -22.33495 -20.81760 -20.15559 -18.26764 -17.44940 -16.38883 -15.39405 -15.04861 -14.82329 -14.44586 -14.09864 -13.91452 -13.64072 -13.13761 -13.06331 -12.96749 -12.61895 -12.33852 -12.13750 -12.03543 -11.91129 -11.73227 -11.63757 -11.33587 -10.95897 -10.84299 -10.70463 -10.65994 -10.58843 -10.31155 -10.04181 -9.78242 -9.22937 -9.19499 -8.72509 -8.43475 -8.08357 -7.30942 -6.03357 -4.03955 1.15160 1.80801 2.23665 3.19465 3.29938 3.37650 3.42360 4.42047 4.43895 4.84589 5.21243 5.25853 5.32146 5.33337 5.38789 5.42899 5.52644 5.53894 5.55539 5.71232 5.86970 5.90197 5.93340 5.95577 6.00499 6.04709 6.11880 6.15042 6.21094 6.34933 6.39928 6.45466 6.70546 6.73944 6.81388 7.27471 7.30294 7.78676 8.06785 8.16560 8.18088 8.50925 9.03309 9.59709 11.07500 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.009755 B = 0.007348 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.576726 B = 3809.832370 C = 6016.105814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.189 3.811 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.128 3.872 16 C -0.188 4.188 17 S 0.130 5.870 18 C 0.024 3.976 19 C -0.071 4.071 20 N -0.475 5.475 21 C 0.065 3.935 22 C -0.073 4.073 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.019 0.981 32 H 0.036 0.964 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 3.791 7.921 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.067 4.067 5 N -0.254 5.254 6 C 0.064 3.936 7 C -0.543 4.543 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.002 4.002 16 C -0.310 4.310 17 S 0.386 5.614 18 C -0.253 4.253 19 C -0.132 4.132 20 N -0.191 5.191 21 C -0.067 4.067 22 C -0.132 4.132 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.679 4.322 7.656 12.354 hybrid contribution 0.035 -0.994 -0.583 1.153 sum -8.644 3.328 7.073 11.655 Atomic orbital electron populations 1.21758 0.96356 1.00966 1.01592 1.21498 0.95264 0.97602 1.01844 1.21661 0.96178 0.95577 1.01815 1.22044 0.93696 0.90268 1.00670 1.62110 1.25872 1.13598 1.23829 1.19839 0.81107 0.97372 0.95284 1.21161 0.93293 1.41808 0.98050 0.91800 1.24971 0.95669 0.95730 0.98161 1.69970 0.98409 1.48009 1.37232 0.86490 0.78084 0.78453 0.84714 1.19652 1.21038 1.21117 1.20394 1.00703 0.86401 0.92723 1.25594 0.94340 1.00943 1.10087 1.84111 1.13885 0.99825 1.63584 1.26770 0.92543 1.01227 1.04791 1.20341 1.00890 0.88607 1.03330 1.66081 1.17113 1.18020 1.17838 1.19969 0.97834 0.87163 1.01747 1.20316 0.89574 1.01825 1.01533 0.93098 0.92781 0.93301 0.91905 0.92546 0.93014 0.91245 0.89290 0.96287 0.94598 0.99311 0.93017 0.89989 0.94632 0.90260 0.90349 0.89773 0.91852 0.91303 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.11 -1.69 4.91 -26.73 -0.13 -1.82 16 4 C 0.06 1.13 4.79 -3.82 -0.02 1.11 16 5 N -0.53 -11.06 4.35 -237.51 -1.03 -12.10 16 6 C 0.19 4.85 4.55 -4.97 -0.02 4.83 16 7 C -0.50 -14.05 8.23 -34.44 -0.28 -14.33 16 8 H 0.06 1.77 7.31 -52.49 -0.38 1.39 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 11 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.13 2.32 4.60 -4.98 -0.02 2.29 16 16 C -0.19 -3.48 5.49 -35.92 -0.20 -3.67 16 17 S 0.13 2.29 22.17 -107.50 -2.38 -0.09 16 18 C 0.02 0.40 7.39 -13.45 -0.10 0.30 16 19 C -0.07 -0.85 10.46 36.01 0.38 -0.48 16 20 N -0.47 -8.60 10.53 -8.06 -0.08 -8.68 16 21 C 0.06 1.17 6.74 -84.23 -0.57 0.60 16 22 C -0.07 -1.09 9.93 36.00 0.36 -0.73 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.70 6.88 -51.93 -0.36 0.34 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 31 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 32 H 0.04 0.98 6.46 -51.93 -0.34 0.65 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.08 1.28 6.05 -51.93 -0.31 0.96 16 36 H 0.04 0.65 8.01 -51.93 -0.42 0.24 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.27 6.94 -51.92 -0.36 0.91 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -30.89 351.81 -10.11 -41.00 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -7.13 Total: -2.97 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.50 Total: -13.37 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.38 Total: -46.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.38 Total: -0.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.89 -10.11 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206171283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.412 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds