Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00024 * 2 1 4 4 C 1.39885 * 110.99834 * 123.95679 * 2 1 3 5 5 C 1.38691 * 120.10638 * 299.99659 * 4 2 1 6 6 C 1.38246 * 120.00284 * 180.02562 * 5 4 2 7 7 C 1.38311 * 120.21685 * 0.02562 * 6 5 4 8 8 C 1.38201 * 120.20633 * 0.02562 * 7 6 5 9 9 C 1.38770 * 119.99799 * 0.27402 * 8 7 6 10 10 N 1.39805 * 120.10685 * 179.69981 * 9 8 7 11 11 C 1.38725 * 120.00142 * 261.69773 * 10 9 8 12 12 C 1.39637 * 119.84431 * 359.08283 * 11 10 9 13 13 C 1.36301 * 120.15251 * 179.71936 * 12 11 10 14 14 C 1.40913 * 119.84079 * 0.55326 * 13 12 11 15 15 C 1.41096 * 120.14815 * 179.70000 * 14 13 12 16 16 H 1.07999 * 120.00039 * 28.28369 * 15 14 13 17 17 C 1.39824 * 119.99785 * 208.28827 * 15 14 13 18 18 N 1.30930 * 120.00283 * 16.27022 * 17 15 14 19 19 Si 1.86795 * 119.99987 * 196.27144 * 17 15 14 20 20 H 1.48499 * 109.47160 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47471 * 120.00008 * 19 17 15 22 22 H 1.48510 * 109.47130 * 240.00287 * 19 17 15 23 23 C 1.40906 * 119.69781 * 359.72353 * 14 13 12 24 24 C 1.36295 * 119.84655 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.47131 * 296.04630 * 1 2 3 26 26 H 1.09006 * 109.47151 * 56.04099 * 1 2 3 27 27 H 1.08997 * 109.47234 * 176.04215 * 1 2 3 28 28 H 1.08995 * 109.47066 * 183.95149 * 3 2 1 29 29 H 1.08994 * 109.47412 * 303.95710 * 3 2 1 30 30 H 1.09001 * 109.47072 * 63.95638 * 3 2 1 31 31 H 1.07999 * 119.99593 * 0.05064 * 5 4 2 32 32 H 1.08001 * 119.89013 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.89192 * 180.02562 * 7 6 5 34 34 H 1.08006 * 119.99793 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00268 * 81.69748 * 10 9 8 36 36 H 1.07998 * 119.92149 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.07460 * 180.29687 * 13 12 11 38 38 H 0.96996 * 120.00010 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.07351 * 179.97438 * 23 14 13 40 40 H 1.07996 * 119.92456 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9703 -0.7295 1.0832 5 6 1.6596 -0.3504 2.3807 6 6 2.1565 -1.0726 3.4496 7 6 2.9645 -2.1735 3.2304 8 6 3.2806 -2.5584 1.9413 9 6 2.7916 -1.8362 0.8620 10 7 3.1150 -2.2198 -0.4429 11 6 4.1424 -1.5789 -1.1199 12 6 4.8387 -0.5382 -0.5019 13 6 5.8530 0.0921 -1.1590 14 6 6.1905 -0.3011 -2.4694 15 6 7.2352 0.3510 -3.1580 16 1 8.0511 0.7946 -2.6066 17 6 7.2140 0.4231 -4.5542 18 7 6.1040 0.1822 -5.2055 19 14 8.7694 0.8631 -5.4904 20 1 9.8790 1.0873 -4.5293 21 1 9.1260 -0.2485 -6.4082 22 1 8.5397 2.1010 -6.2780 23 6 5.4798 -1.3482 -3.0890 24 6 4.4719 -1.9739 -2.4180 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7044 1.8723 0.9233 31 1 1.0290 0.5087 2.5558 32 1 1.9131 -0.7760 4.4592 33 1 3.3496 -2.7341 4.0694 34 1 3.9115 -3.4190 1.7740 35 1 2.6211 -2.9341 -0.8750 36 1 4.5756 -0.2347 0.5007 37 1 6.3938 0.8936 -0.6780 38 1 6.0893 0.2326 -6.1740 39 1 5.7332 -1.6542 -4.0933 40 1 3.9260 -2.7763 -2.8918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209990449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = 68.180957 kcal Electronic energy + Delta-G solvation = -21646.747946 eV Core-core repulsion = 18619.346204 eV Total energy + Delta-G solvation = -3027.401742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.96191 -37.63795 -36.31828 -34.83349 -32.88169 -30.14541 -29.70493 -29.12277 -27.83725 -27.36007 -24.57171 -24.16490 -22.22398 -20.85420 -20.72033 -20.05401 -17.21818 -16.98087 -16.09390 -16.04694 -15.48891 -15.00446 -14.69846 -14.38034 -13.91135 -13.81453 -13.47464 -12.76758 -12.66310 -12.37504 -12.19730 -11.98591 -11.91423 -11.84957 -11.59049 -11.50515 -11.40229 -11.06190 -10.98980 -10.76901 -10.45604 -9.61205 -9.32057 -9.21204 -8.72768 -8.61715 -8.33617 -8.19262 -7.41922 -6.57527 -6.33298 -3.99632 1.43454 1.50113 2.95284 3.16391 3.19093 3.24342 3.39557 3.84165 4.05666 4.10624 4.33363 4.83229 5.02173 5.12862 5.23177 5.36482 5.44639 5.55048 5.69551 5.74563 5.84631 5.87734 5.91026 5.97439 6.26189 6.34688 6.38631 6.43965 6.55142 6.68505 6.87867 7.00115 7.09631 7.12994 7.26047 7.38493 7.55639 7.68611 7.75125 7.89112 8.21067 8.39690 8.60612 8.74322 8.84260 9.12044 9.20488 10.45248 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026190 B = 0.004309 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.859793 B = 6496.876355 C = 6790.792808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.492 5.492 3 C 0.030 3.970 4 C 0.081 3.919 5 C -0.148 4.148 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.124 4.124 9 C 0.201 3.799 10 N -0.705 5.705 11 C 0.109 3.891 12 C -0.147 4.147 13 C -0.187 4.187 14 C 0.078 3.922 15 C -0.470 4.470 16 H 0.071 0.929 17 C 0.075 3.925 18 N -0.811 5.811 19 Si 0.900 3.100 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.278 1.278 23 C -0.119 4.119 24 C -0.160 4.160 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.393 0.607 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.274 0.726 39 H 0.114 0.886 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 -2.417 11.333 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.212 5.212 3 C -0.117 4.117 4 C -0.015 4.015 5 C -0.169 4.169 6 C -0.143 4.143 7 C -0.137 4.137 8 C -0.145 4.145 9 C 0.106 3.894 10 N -0.336 5.336 11 C 0.014 3.986 12 C -0.169 4.169 13 C -0.207 4.207 14 C 0.075 3.925 15 C -0.501 4.501 16 H 0.089 0.911 17 C -0.139 4.139 18 N -0.439 5.439 19 Si 0.726 3.274 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.204 1.204 23 C -0.139 4.139 24 C -0.182 4.182 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.229 0.771 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.146 -2.518 10.726 14.319 hybrid contribution 0.096 0.541 0.034 0.551 sum -9.050 -1.977 10.760 14.198 Atomic orbital electron populations 1.22407 0.86842 1.02078 1.00202 1.59439 1.07131 1.14046 1.40634 1.22473 1.02489 0.87006 0.99692 1.19434 0.97433 0.96034 0.88613 1.21527 1.01794 1.00436 0.93141 1.20930 0.98936 0.96146 0.98282 1.21015 0.98813 0.97364 0.96526 1.21580 0.99817 1.01001 0.92077 1.17367 0.93491 0.92564 0.86022 1.41031 1.39006 1.41881 1.11728 1.17195 0.91912 0.97199 0.92288 1.19783 0.99850 0.98837 0.98437 1.20561 1.00376 1.02161 0.97587 1.17465 0.92832 0.91172 0.91030 1.19348 1.06930 1.32850 0.90993 0.91057 1.25748 0.96465 0.93517 0.98193 1.69871 1.25988 1.38960 1.09062 0.86400 0.82893 0.78457 0.79680 1.18719 1.20039 1.20358 1.20803 0.97291 0.96114 0.99719 1.19993 1.01827 1.02852 0.93480 0.95853 0.91168 0.91650 0.90009 0.91184 0.96110 0.86719 0.86503 0.86196 0.85670 0.77119 0.89943 0.89334 0.91506 0.86789 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.35 60.06 0.56 0.96 16 2 N -0.49 -7.76 4.70 -186.64 -0.88 -8.63 16 3 C 0.03 0.46 9.39 60.07 0.56 1.03 16 4 C 0.08 1.26 4.36 -83.51 -0.36 0.89 16 5 C -0.15 -1.97 8.57 -39.41 -0.34 -2.31 16 6 C -0.12 -1.48 10.04 -39.55 -0.40 -1.88 16 7 C -0.12 -1.45 10.04 -39.57 -0.40 -1.85 16 8 C -0.12 -1.79 9.96 -39.40 -0.39 -2.18 16 9 C 0.20 3.29 4.45 -83.52 -0.37 2.92 16 10 N -0.70 -12.73 5.08 -8.16 -0.04 -12.77 16 11 C 0.11 2.39 6.64 -83.70 -0.56 1.83 16 12 C -0.15 -3.36 8.06 -39.76 -0.32 -3.68 16 13 C -0.19 -4.68 9.74 -39.27 -0.38 -5.06 16 14 C 0.08 2.11 5.53 -106.79 -0.59 1.52 16 15 C -0.47 -12.89 9.02 -37.91 -0.34 -13.24 16 16 H 0.07 1.91 7.90 -52.49 -0.41 1.49 16 17 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 18 N -0.81 -21.83 11.11 55.54 0.62 -21.21 16 19 Si 0.90 19.50 29.59 -169.99 -5.03 14.47 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 23 C -0.12 -3.14 8.60 -39.27 -0.34 -3.47 16 24 C -0.16 -3.74 9.82 -39.76 -0.39 -4.13 16 25 H 0.02 0.26 7.13 -51.93 -0.37 -0.11 16 26 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.48 6.63 -51.93 -0.34 1.14 16 29 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 30 H 0.02 0.28 7.35 -51.93 -0.38 -0.11 16 31 H 0.11 1.36 7.02 -52.49 -0.37 0.99 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.39 6.46 8.82 -40.82 -0.36 6.10 16 36 H 0.08 1.80 6.40 -52.49 -0.34 1.46 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 39 H 0.11 3.12 6.38 -52.49 -0.33 2.78 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -28.88 331.10 -9.91 -38.79 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.42 Total: 11.13 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -4.15 Total: -26.77 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.30 Total: -42.61 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.88 -9.91 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209990449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.967 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds