Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00024 * 2 1 4 4 C 1.39885 * 110.99834 * 123.95679 * 2 1 3 5 5 C 1.38691 * 120.10638 * 299.99659 * 4 2 1 6 6 C 1.38246 * 120.00284 * 180.02562 * 5 4 2 7 7 C 1.38311 * 120.21685 * 0.02562 * 6 5 4 8 8 C 1.38201 * 120.20633 * 0.02562 * 7 6 5 9 9 C 1.38770 * 119.99799 * 0.27402 * 8 7 6 10 10 N 1.39805 * 120.10685 * 179.69981 * 9 8 7 11 11 C 1.38725 * 120.00142 * 261.69773 * 10 9 8 12 12 C 1.39637 * 119.84431 * 359.08283 * 11 10 9 13 13 C 1.36301 * 120.15251 * 179.71936 * 12 11 10 14 14 C 1.40913 * 119.84079 * 0.55326 * 13 12 11 15 15 C 1.41096 * 120.14815 * 179.70000 * 14 13 12 16 16 H 1.07999 * 120.00039 * 28.28369 * 15 14 13 17 17 C 1.39824 * 119.99785 * 208.28827 * 15 14 13 18 18 N 1.30930 * 120.00283 * 16.27022 * 17 15 14 19 19 Si 1.86795 * 119.99987 * 196.27144 * 17 15 14 20 20 H 1.48499 * 109.47160 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47471 * 120.00008 * 19 17 15 22 22 H 1.48510 * 109.47130 * 240.00287 * 19 17 15 23 23 C 1.40906 * 119.69781 * 359.72353 * 14 13 12 24 24 C 1.36295 * 119.84655 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.47131 * 296.04630 * 1 2 3 26 26 H 1.09006 * 109.47151 * 56.04099 * 1 2 3 27 27 H 1.08997 * 109.47234 * 176.04215 * 1 2 3 28 28 H 1.08995 * 109.47066 * 183.95149 * 3 2 1 29 29 H 1.08994 * 109.47412 * 303.95710 * 3 2 1 30 30 H 1.09001 * 109.47072 * 63.95638 * 3 2 1 31 31 H 1.07999 * 119.99593 * 0.05064 * 5 4 2 32 32 H 1.08001 * 119.89013 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.89192 * 180.02562 * 7 6 5 34 34 H 1.08006 * 119.99793 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00268 * 81.69748 * 10 9 8 36 36 H 1.07998 * 119.92149 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.07460 * 180.29687 * 13 12 11 38 38 H 0.96996 * 120.00010 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.07351 * 179.97438 * 23 14 13 40 40 H 1.07996 * 119.92456 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9703 -0.7295 1.0832 5 6 1.6596 -0.3504 2.3807 6 6 2.1565 -1.0726 3.4496 7 6 2.9645 -2.1735 3.2304 8 6 3.2806 -2.5584 1.9413 9 6 2.7916 -1.8362 0.8620 10 7 3.1150 -2.2198 -0.4429 11 6 4.1424 -1.5789 -1.1199 12 6 4.8387 -0.5382 -0.5019 13 6 5.8530 0.0921 -1.1590 14 6 6.1905 -0.3011 -2.4694 15 6 7.2352 0.3510 -3.1580 16 1 8.0511 0.7946 -2.6066 17 6 7.2140 0.4231 -4.5542 18 7 6.1040 0.1822 -5.2055 19 14 8.7694 0.8631 -5.4904 20 1 9.8790 1.0873 -4.5293 21 1 9.1260 -0.2485 -6.4082 22 1 8.5397 2.1010 -6.2780 23 6 5.4798 -1.3482 -3.0890 24 6 4.4719 -1.9739 -2.4180 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7044 1.8723 0.9233 31 1 1.0290 0.5087 2.5558 32 1 1.9131 -0.7760 4.4592 33 1 3.3496 -2.7341 4.0694 34 1 3.9115 -3.4190 1.7740 35 1 2.6211 -2.9341 -0.8750 36 1 4.5756 -0.2347 0.5007 37 1 6.3938 0.8936 -0.6780 38 1 6.0893 0.2326 -6.1740 39 1 5.7332 -1.6542 -4.0933 40 1 3.9260 -2.7763 -2.8918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209990449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = 52.933996 kcal Electronic energy + Delta-G solvation = -21647.409104 eV Core-core repulsion = 18619.346204 eV Total energy + Delta-G solvation = -3028.062900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14893 -39.39505 -37.45098 -36.43390 -34.68410 -31.71235 -31.05910 -30.75773 -29.37690 -28.47951 -26.29927 -25.36253 -23.62975 -22.56850 -22.10948 -21.54238 -19.11118 -18.27193 -17.75228 -17.31684 -16.80417 -16.59565 -15.86766 -15.63707 -15.48820 -15.02455 -14.66714 -14.49853 -14.41031 -13.85370 -13.67708 -13.54037 -13.30249 -13.17568 -12.92745 -12.78410 -12.70105 -12.62438 -12.55096 -12.32896 -12.10585 -11.51851 -11.21612 -11.08214 -10.42517 -9.74603 -9.46736 -9.37314 -9.30375 -8.51018 -8.13762 -5.99915 0.38128 0.42610 1.13383 1.22620 1.41207 1.55471 1.59656 2.29824 2.75051 2.88516 2.90778 3.03770 3.86899 4.04952 4.17757 4.23904 4.35700 4.41606 4.46390 4.50183 4.56384 4.58985 4.65175 4.79017 4.91205 4.93434 5.01317 5.05686 5.21073 5.32422 5.42211 5.48207 5.55260 5.62138 5.76938 5.78144 5.93016 5.99058 6.02219 6.21623 6.42606 6.49740 6.74027 6.96840 7.12027 7.23043 7.29986 8.53548 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026190 B = 0.004309 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.859793 B = 6496.876355 C = 6790.792808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.517 5.517 3 C 0.035 3.965 4 C 0.068 3.932 5 C -0.151 4.151 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.131 4.131 9 C 0.162 3.838 10 N -0.695 5.695 11 C 0.137 3.863 12 C -0.146 4.146 13 C -0.194 4.194 14 C 0.040 3.960 15 C -0.508 4.508 16 H 0.065 0.935 17 C 0.033 3.967 18 N -0.846 5.846 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.135 4.135 24 C -0.172 4.172 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.401 0.599 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.281 0.719 39 H 0.095 0.905 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -2.593 13.471 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.238 5.238 3 C -0.112 4.112 4 C -0.027 4.027 5 C -0.172 4.172 6 C -0.132 4.132 7 C -0.133 4.133 8 C -0.151 4.151 9 C 0.069 3.931 10 N -0.325 5.325 11 C 0.039 3.961 12 C -0.168 4.168 13 C -0.214 4.214 14 C 0.038 3.962 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.178 4.178 18 N -0.474 5.474 19 Si 0.796 3.204 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.195 1.195 23 C -0.155 4.155 24 C -0.194 4.194 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.145 0.855 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.234 -2.714 12.904 16.692 hybrid contribution 0.230 0.529 -0.401 0.702 sum -10.003 -2.185 12.504 16.161 Atomic orbital electron populations 1.22417 0.85080 1.02407 1.01305 1.59374 1.08886 1.13990 1.41566 1.22356 1.00367 0.87566 1.00875 1.19506 0.97819 0.95835 0.89573 1.21729 1.01889 1.01064 0.92472 1.21358 0.97252 0.95066 0.99517 1.21370 0.98077 0.97436 0.96385 1.21682 0.99897 1.00957 0.92614 1.17642 0.95766 0.94446 0.85295 1.40941 1.37711 1.41316 1.12554 1.17228 0.91586 0.95752 0.91551 1.19814 0.99243 0.98884 0.98845 1.20703 1.01048 1.02450 0.97232 1.17741 0.94021 0.92280 0.92200 1.19548 1.07497 1.34638 0.92245 0.91698 1.26544 0.99613 0.93083 0.98551 1.69936 1.27874 1.40015 1.09601 0.85282 0.78475 0.78501 0.78107 1.18534 1.19142 1.19452 1.20721 0.98625 0.96830 0.99299 1.20173 1.01534 1.03403 0.94251 0.94079 0.90754 0.91605 0.93252 0.91085 0.93969 0.85098 0.83134 0.83134 0.85473 0.76302 0.88719 0.89220 0.90920 0.88670 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.35 127.69 1.19 2.00 16 2 N -0.52 -15.62 4.70 -744.41 -3.50 -19.11 16 3 C 0.04 1.06 9.39 127.69 1.20 2.25 16 4 C 0.07 1.99 4.36 38.29 0.17 2.16 16 5 C -0.15 -3.51 8.57 22.38 0.19 -3.32 16 6 C -0.11 -2.21 10.04 22.29 0.22 -1.99 16 7 C -0.11 -2.36 10.04 22.28 0.22 -2.13 16 8 C -0.13 -3.48 9.96 22.39 0.22 -3.25 16 9 C 0.16 5.07 4.45 38.32 0.17 5.24 16 10 N -0.69 -24.50 5.08 -179.74 -0.91 -25.41 16 11 C 0.14 5.98 6.64 38.73 0.26 6.23 16 12 C -0.15 -6.71 8.06 22.16 0.18 -6.53 16 13 C -0.19 -10.06 9.74 22.47 0.22 -9.84 16 14 C 0.04 2.29 5.53 -21.27 -0.12 2.17 16 15 C -0.51 -29.12 9.02 23.36 0.21 -28.91 16 16 H 0.06 3.64 7.90 -2.91 -0.02 3.61 16 17 C 0.03 1.79 5.13 85.21 0.44 2.23 16 18 N -0.85 -47.09 11.11 21.81 0.24 -46.85 16 19 Si 0.97 40.96 29.59 68.60 2.03 42.99 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 C -0.13 -7.37 8.60 22.47 0.19 -7.18 16 24 C -0.17 -8.17 9.82 22.15 0.22 -7.95 16 25 H 0.04 0.80 7.13 -2.38 -0.02 0.79 16 26 H 0.07 1.64 8.12 -2.38 -0.02 1.62 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.79 6.63 -2.39 -0.02 1.78 16 29 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 30 H 0.04 1.05 7.35 -2.39 -0.02 1.03 16 31 H 0.13 2.59 7.02 -2.91 -0.02 2.56 16 32 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.40 12.79 8.82 -92.71 -0.82 11.97 16 36 H 0.09 4.11 6.40 -2.91 -0.02 4.09 16 37 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 39 H 0.10 5.48 6.38 -2.91 -0.02 5.46 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -64.58 331.10 3.28 -61.31 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.23 Total: 35.90 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 5.19 Total: -48.82 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -4.17 Total: -91.37 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -64.58 3.28 -61.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209990449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.240 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds