Wall clock time and date at job start Tue Mar 31 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 111.00004 * 2 1 4 4 C 1.39976 * 111.00556 * 236.04437 * 2 1 3 5 5 C 1.38677 * 120.09758 * 59.99772 * 4 2 1 6 6 C 1.38260 * 120.00384 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.19388 * 0.02562 * 6 5 4 8 8 C 1.38248 * 120.20117 * 359.97438 * 7 6 5 9 9 C 1.38699 * 119.99615 * 359.74433 * 8 7 6 10 10 N 1.40019 * 120.09680 * 180.25362 * 9 8 7 11 11 C 1.39682 * 120.00030 * 260.29305 * 10 9 8 12 12 C 1.39361 * 119.95265 * 0.51661 * 11 10 9 13 13 C 1.38469 * 120.41736 * 179.72267 * 12 11 10 14 14 C 1.37700 * 120.32573 * 0.54667 * 13 12 11 15 15 C 1.40752 * 119.89938 * 359.73118 * 14 13 12 16 16 C 1.41417 * 120.20254 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00183 * 27.47253 * 16 15 14 18 18 C 1.39927 * 119.99579 * 207.46718 * 16 15 14 19 19 N 1.30832 * 120.00051 * 17.11171 * 18 16 15 20 20 Si 1.86799 * 119.99858 * 197.10819 * 18 16 15 21 21 H 1.48505 * 109.47040 * 60.00525 * 20 18 16 22 22 H 1.48502 * 109.47238 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47042 * 300.00317 * 20 18 16 24 24 C 1.38305 * 119.95262 * 180.78801 * 11 10 9 25 25 H 1.09005 * 109.47059 * 183.95239 * 1 2 3 26 26 H 1.09005 * 109.46981 * 63.95659 * 1 2 3 27 27 H 1.09000 * 109.47602 * 303.95386 * 1 2 3 28 28 H 1.08995 * 109.47088 * 60.00019 * 3 2 1 29 29 H 1.09005 * 109.47117 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47419 * 299.99875 * 3 2 1 31 31 H 1.08007 * 119.99702 * 359.96330 * 5 4 2 32 32 H 1.07996 * 119.90266 * 179.97438 * 6 5 4 33 33 H 1.08008 * 119.90067 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.00607 * 179.97438 * 8 7 6 35 35 H 0.97002 * 119.99333 * 80.30003 * 10 9 8 36 36 H 1.07997 * 119.78961 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.84010 * 180.28009 * 13 12 11 38 38 H 1.07999 * 120.04625 * 179.74575 * 14 13 12 39 39 H 0.96998 * 119.99811 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.16286 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9707 -0.7299 -1.0839 5 6 1.6599 -0.3508 -2.3811 6 6 2.1570 -1.0728 -3.4503 7 6 2.9639 -2.1739 -3.2308 8 6 3.2790 -2.5591 -1.9410 9 6 2.7895 -1.8372 -0.8626 10 7 3.1116 -2.2224 0.4445 11 6 2.1975 -2.9598 1.2006 12 6 0.9696 -3.3209 0.6494 13 6 0.0586 -4.0567 1.3883 14 6 0.3519 -4.4303 2.6808 15 6 1.5858 -4.0679 3.2530 16 6 1.8939 -4.4487 4.5796 17 1 1.4504 -5.3376 5.0032 18 6 2.7736 -3.6736 5.3434 19 7 3.0488 -2.4472 4.9804 20 14 3.5549 -4.3901 6.8815 21 1 4.3546 -5.5877 6.5187 22 1 4.4407 -3.3747 7.5057 23 1 2.4912 -4.7776 7.8425 24 6 2.5101 -3.3257 2.4972 25 1 -0.3633 -1.0253 0.0708 26 1 -0.3633 0.4512 -0.9234 27 1 -0.3634 0.5740 0.8524 28 1 1.6459 1.8948 0.8899 29 1 3.0850 1.3424 0.0005 30 1 1.6459 1.8948 -0.8899 31 1 1.0293 0.5085 -2.5562 32 1 1.9136 -0.7763 -4.4599 33 1 3.3493 -2.7347 -4.0695 34 1 3.9093 -3.4200 -1.7732 35 1 3.9696 -1.9770 0.8248 36 1 0.7286 -3.0284 -0.3619 37 1 -0.8884 -4.3354 0.9503 38 1 -0.3636 -5.0007 3.2544 39 1 3.6589 -1.9101 5.5097 40 1 3.4598 -3.0431 2.9269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209992116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:05 Heat of formation + Delta-G solvation = 64.964395 kcal Electronic energy + Delta-G solvation = -21814.560931 eV Core-core repulsion = 18787.019709 eV Total energy + Delta-G solvation = -3027.541222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.90442 -37.48471 -36.26631 -34.64550 -33.15647 -30.07243 -29.49146 -29.37107 -27.36050 -26.86980 -25.06530 -24.26060 -22.11888 -20.90060 -20.77933 -19.81177 -17.44801 -16.74286 -16.07395 -15.65922 -15.41419 -14.80635 -14.54493 -14.45135 -14.23462 -13.83699 -13.45428 -12.80775 -12.71993 -12.35073 -12.15541 -12.12270 -11.84505 -11.75054 -11.55880 -11.42676 -11.30598 -11.01208 -10.94635 -10.51577 -10.40254 -9.60158 -9.38614 -9.26710 -8.84485 -8.64878 -8.30367 -8.13328 -7.19644 -6.63894 -6.13458 -4.22715 1.47049 1.53274 2.95831 3.13940 3.17600 3.30188 3.41450 3.87754 4.04791 4.10450 4.33455 4.81513 5.04752 5.15219 5.27727 5.42140 5.48468 5.56212 5.73689 5.76547 5.87486 5.91328 5.99479 6.00374 6.24675 6.36066 6.46802 6.57770 6.68934 6.71759 6.91985 7.01481 7.17201 7.20992 7.23366 7.43851 7.49782 7.64556 7.95540 8.05774 8.17866 8.25470 8.58389 8.78224 8.92598 9.08998 9.18729 10.36220 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.004787 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.054353 B = 5848.159006 C = 6023.682557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.491 5.491 3 C 0.034 3.966 4 C 0.085 3.915 5 C -0.149 4.149 6 C -0.124 4.124 7 C -0.119 4.119 8 C -0.124 4.124 9 C 0.199 3.801 10 N -0.706 5.706 11 C 0.230 3.770 12 C -0.279 4.279 13 C -0.070 4.070 14 C -0.254 4.254 15 C 0.141 3.859 16 C -0.470 4.470 17 H 0.074 0.926 18 C 0.080 3.920 19 N -0.794 5.794 20 Si 0.902 3.098 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.221 4.221 25 H 0.078 0.922 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.398 0.602 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.277 0.723 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 5.759 -11.967 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.211 5.211 3 C -0.113 4.113 4 C -0.011 4.011 5 C -0.170 4.170 6 C -0.143 4.143 7 C -0.137 4.137 8 C -0.144 4.144 9 C 0.104 3.896 10 N -0.336 5.336 11 C 0.134 3.866 12 C -0.302 4.302 13 C -0.089 4.089 14 C -0.275 4.275 15 C 0.138 3.862 16 C -0.500 4.500 17 H 0.092 0.908 18 C -0.138 4.138 19 N -0.419 5.419 20 Si 0.726 3.274 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.245 4.245 25 H 0.097 0.903 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.813 5.767 -11.526 12.914 hybrid contribution 0.290 0.396 0.150 0.513 sum 1.103 6.163 -11.376 12.985 Atomic orbital electron populations 1.22432 0.85942 1.03470 0.99584 1.59429 1.08200 1.12921 1.40532 1.22383 1.00605 0.88018 1.00280 1.19362 0.98149 0.95011 0.88590 1.21524 1.01595 1.00718 0.93120 1.20914 0.98850 0.96313 0.98255 1.21000 0.98996 0.97286 0.96466 1.21543 1.01342 0.99461 0.92091 1.17423 0.94968 0.91318 0.85876 1.41665 1.19335 1.61648 1.10933 1.17476 0.88454 0.90360 0.90346 1.19796 0.96508 1.14179 0.99709 1.20260 0.96614 0.97570 0.94458 1.20864 0.98288 1.12104 0.96229 1.17267 0.88993 0.87936 0.92000 1.19469 1.23704 1.09511 0.97360 0.90768 1.25822 0.94954 0.93958 0.99019 1.69866 1.27957 1.06546 1.37576 0.86492 0.79656 0.79712 0.81498 1.19015 1.20565 1.19192 1.20614 1.01739 1.10768 0.91369 0.90298 0.96212 0.91236 0.91080 0.91632 0.96002 0.86719 0.86525 0.86202 0.85652 0.76619 0.90068 0.89896 0.89524 0.91264 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.35 60.06 0.56 1.07 16 2 N -0.49 -8.17 4.70 -186.65 -0.88 -9.05 16 3 C 0.03 0.47 9.33 60.07 0.56 1.03 16 4 C 0.08 1.38 4.31 -83.51 -0.36 1.02 16 5 C -0.15 -2.04 8.62 -39.41 -0.34 -2.38 16 6 C -0.12 -1.53 10.04 -39.56 -0.40 -1.92 16 7 C -0.12 -1.50 10.04 -39.57 -0.40 -1.90 16 8 C -0.12 -1.87 9.96 -39.41 -0.39 -2.26 16 9 C 0.20 3.45 4.51 -83.48 -0.38 3.07 16 10 N -0.71 -13.91 5.12 -8.30 -0.04 -13.95 16 11 C 0.23 5.38 6.62 -83.84 -0.56 4.83 16 12 C -0.28 -6.44 8.51 -39.08 -0.33 -6.77 16 13 C -0.07 -1.64 10.02 -39.69 -0.40 -2.04 16 14 C -0.25 -6.50 9.79 -38.83 -0.38 -6.88 16 15 C 0.14 3.86 5.54 -106.85 -0.59 3.27 16 16 C -0.47 -12.84 9.04 -37.74 -0.34 -13.18 16 17 H 0.07 1.96 7.90 -52.49 -0.41 1.54 16 18 C 0.08 2.05 5.13 -17.35 -0.09 1.96 16 19 N -0.79 -21.02 11.12 55.55 0.62 -20.41 16 20 Si 0.90 19.18 29.59 -169.99 -5.03 14.15 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.22 -5.80 8.51 -38.67 -0.33 -6.13 16 25 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 26 H 0.02 0.26 7.13 -51.93 -0.37 -0.11 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.02 0.26 7.48 -51.93 -0.39 -0.13 16 31 H 0.11 1.40 7.05 -52.48 -0.37 1.03 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 35 H 0.40 7.49 8.83 -40.82 -0.36 7.13 16 36 H 0.08 1.80 6.51 -52.49 -0.34 1.45 16 37 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.28 6.73 8.30 -40.82 -0.34 6.40 16 40 H 0.11 3.04 6.36 -52.48 -0.33 2.70 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -28.91 332.60 -9.95 -38.86 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.47 Total: 12.61 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -4.16 Total: -27.22 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.30 Total: -43.40 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.91 -9.95 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209992116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.825 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds