Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99869 * 2 1 4 4 C 1.50694 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.38303 * 119.91927 * 90.00199 * 4 3 2 6 6 C 1.38083 * 120.08315 * 179.97438 * 5 4 3 7 7 C 1.38975 * 119.91887 * 0.02562 * 6 5 4 8 8 N 1.39589 * 120.08481 * 180.02562 * 7 6 5 9 9 C 1.38686 * 120.00139 * 187.46661 * 8 7 6 10 10 C 1.38810 * 120.29713 * 253.05736 * 9 8 7 11 11 C 1.38114 * 120.02211 * 180.25987 * 10 9 8 12 12 C 1.38929 * 120.63201 * 359.73798 * 11 10 9 13 13 C 1.36424 * 120.60607 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.95330 * 0.02562 * 13 12 11 15 15 C 1.41018 * 120.30881 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99646 * 154.64286 * 15 14 13 17 17 C 1.39908 * 120.00226 * 334.65261 * 15 14 13 18 18 N 1.30888 * 119.99779 * 334.26580 * 17 15 14 19 19 Si 1.86797 * 120.00215 * 154.27324 * 17 15 14 20 20 H 1.48500 * 109.47252 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47055 * 299.99655 * 19 17 15 22 22 H 1.48501 * 109.47213 * 59.99243 * 19 17 15 23 23 C 1.38975 * 119.83917 * 0.27053 * 7 6 5 24 24 C 1.38084 * 119.91917 * 359.45334 * 23 7 6 25 25 H 1.08999 * 109.46974 * 299.99696 * 1 2 3 26 26 H 1.08997 * 109.46897 * 59.99958 * 1 2 3 27 27 H 1.08998 * 109.46900 * 180.02562 * 1 2 3 28 28 H 1.00899 * 111.00190 * 236.04751 * 2 1 3 29 29 H 1.09002 * 109.47410 * 60.00176 * 3 2 1 30 30 H 1.08997 * 109.47133 * 300.00335 * 3 2 1 31 31 H 1.07998 * 119.96167 * 359.95373 * 5 4 3 32 32 H 1.07999 * 120.04763 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99447 * 7.46334 * 8 7 6 34 34 H 1.08003 * 119.99102 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.68195 * 179.76379 * 11 10 9 36 36 H 1.08004 * 119.69413 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.02005 * 180.02562 * 13 12 11 38 38 H 0.97000 * 119.99851 * 354.78201 * 18 17 15 39 39 H 1.08000 * 120.04250 * 179.70835 * 23 7 6 40 40 H 1.08000 * 119.96494 * 180.29489 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1919 1.3127 -1.1978 6 6 5.5723 1.2765 -1.2012 7 6 6.2682 1.2580 0.0017 8 7 7.6636 1.2219 0.0023 9 6 8.3522 1.0475 1.1935 10 6 9.0323 2.1108 1.7712 11 6 9.7207 1.9294 2.9548 12 6 9.7369 0.6896 3.5815 13 6 9.0725 -0.3714 3.0393 14 6 8.3629 -0.2148 1.8341 15 6 7.6740 -1.3066 1.2667 16 1 6.8295 -1.1331 0.6162 17 6 8.0843 -2.6145 1.5467 18 7 9.3269 -2.8531 1.8815 19 14 6.8587 -4.0204 1.4427 20 1 7.5385 -5.2960 1.7831 21 1 5.7479 -3.7805 2.3987 22 1 6.3153 -4.1023 0.0631 23 6 5.5712 1.2705 1.2040 24 6 4.1910 1.3126 1.1996 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8307 -0.5261 -0.7814 29 1 1.6460 1.8948 0.8900 30 1 1.6459 1.8948 -0.8899 31 1 3.6506 1.3263 -2.1322 32 1 6.1106 1.2616 -2.1373 33 1 8.1515 1.3187 -0.8304 34 1 9.0270 3.0790 1.2928 35 1 10.2512 2.7595 3.3975 36 1 10.2798 0.5649 4.5068 37 1 9.0911 -1.3310 3.5347 38 1 9.9805 -2.1366 1.8621 39 1 6.1086 1.2515 2.1407 40 1 3.6489 1.3271 2.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211131081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = 41.226736 kcal Electronic energy + Delta-G solvation = -21391.491162 eV Core-core repulsion = 18362.920597 eV Total energy + Delta-G solvation = -3028.570565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.29002 -37.89016 -36.01066 -34.27661 -33.86119 -30.49245 -30.09019 -29.36060 -28.09021 -25.81327 -24.84379 -23.19967 -22.32018 -21.01960 -20.96038 -19.89380 -17.94009 -16.80792 -16.35999 -15.84251 -14.81566 -14.73718 -14.53015 -14.37740 -13.99142 -13.85684 -13.65744 -12.99243 -12.78417 -12.66607 -12.36564 -12.24776 -12.05983 -11.91722 -11.70009 -11.28898 -10.95426 -10.81712 -10.68080 -10.41178 -10.39435 -10.11313 -9.75129 -9.29113 -8.95180 -8.40363 -8.30791 -7.74942 -7.66029 -7.22382 -6.59306 -4.46766 2.06096 2.12643 2.66776 2.75541 3.17285 3.27637 3.38212 3.99748 4.25374 4.41004 4.51352 4.69884 5.16840 5.22308 5.37025 5.39178 5.42949 5.57735 5.62875 5.78309 5.80300 6.00402 6.04804 6.18500 6.27800 6.37762 6.48523 6.61488 6.84961 6.90301 7.00620 7.04665 7.06290 7.24450 7.25877 7.42668 7.43087 7.58682 7.69344 7.75928 7.88042 8.07814 8.13945 8.42611 8.49020 8.79443 8.92508 9.98243 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.005946 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.706399 B = 4707.851218 C = 6001.483468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.691 5.691 3 C 0.113 3.887 4 C -0.166 4.166 5 C -0.071 4.071 6 C -0.212 4.212 7 C 0.241 3.759 8 N -0.662 5.662 9 C -0.004 4.004 10 C -0.076 4.076 11 C -0.256 4.256 12 C -0.082 4.082 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.495 4.495 16 H 0.082 0.918 17 C 0.039 3.961 18 N -0.791 5.791 19 Si 1.060 2.940 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.275 1.275 23 C -0.173 4.173 24 C -0.053 4.053 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.343 0.657 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.390 0.610 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.299 0.701 39 H 0.123 0.877 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 4.835 -4.362 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.015 4.015 4 C -0.169 4.169 5 C -0.090 4.090 6 C -0.235 4.235 7 C 0.136 3.864 8 N -0.282 5.282 9 C -0.097 4.097 10 C -0.096 4.096 11 C -0.275 4.275 12 C -0.101 4.101 13 C -0.233 4.233 14 C 0.095 3.905 15 C -0.523 4.523 16 H 0.100 0.900 17 C -0.183 4.183 18 N -0.414 5.414 19 Si 0.883 3.117 20 H -0.199 1.199 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.196 4.196 24 C -0.073 4.073 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.160 0.840 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.225 0.775 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.866 3.084 -3.259 10.838 hybrid contribution 0.335 1.929 -1.428 2.423 sum -9.530 5.012 -4.686 11.744 Atomic orbital electron populations 1.22191 0.88445 1.01593 0.99988 1.60457 1.06810 1.14507 1.50404 1.20699 0.91694 0.89064 1.00043 1.19240 0.93811 1.10527 0.93322 1.20502 0.93364 0.98619 0.96521 1.20423 0.94164 1.12889 0.95981 1.17979 0.84098 0.90901 0.93418 1.41224 1.01632 1.77638 1.07698 1.17265 1.06986 0.94275 0.91180 1.20784 0.97828 0.95924 0.95059 1.20139 1.10582 0.96982 0.99843 1.20398 0.98223 0.93485 0.97949 1.20857 1.06149 0.98644 0.97620 1.17805 0.90199 0.91833 0.90683 1.20511 1.14028 0.91674 1.26056 0.89965 1.27037 0.98483 1.01540 0.91261 1.70499 1.02758 1.39026 1.29082 0.83703 0.75100 0.74665 0.78225 1.19937 1.19651 1.20030 1.20724 0.93781 1.07787 0.97269 1.20647 0.93300 0.96440 0.96877 0.91915 0.96492 0.91648 0.83954 0.91009 0.95396 0.87526 0.87080 0.77523 0.89180 0.89213 0.89258 0.87586 0.88713 0.85952 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 60.07 0.64 0.92 16 2 N -0.69 -8.88 6.84 -122.42 -0.84 -9.72 16 3 C 0.11 1.48 5.81 -4.98 -0.03 1.45 16 4 C -0.17 -2.62 5.40 -104.57 -0.56 -3.19 16 5 C -0.07 -1.10 9.69 -39.61 -0.38 -1.48 16 6 C -0.21 -3.63 9.90 -39.37 -0.39 -4.02 16 7 C 0.24 4.75 5.22 -83.78 -0.44 4.31 16 8 N -0.66 -13.49 4.91 -8.04 -0.04 -13.53 16 9 C 0.00 -0.08 4.64 -83.28 -0.39 -0.47 16 10 C -0.08 -1.65 9.96 -39.42 -0.39 -2.04 16 11 C -0.26 -5.50 10.03 -39.37 -0.40 -5.89 16 12 C -0.08 -1.84 9.96 -39.98 -0.40 -2.24 16 13 C -0.21 -5.25 7.89 -39.29 -0.31 -5.56 16 14 C 0.10 2.49 4.76 -106.64 -0.51 1.98 16 15 C -0.50 -12.69 8.27 -37.90 -0.31 -13.00 16 16 H 0.08 2.15 6.32 -52.49 -0.33 1.82 16 17 C 0.04 0.98 4.93 -17.33 -0.09 0.90 16 18 N -0.79 -20.53 12.34 55.55 0.69 -19.85 16 19 Si 1.06 21.98 30.00 -169.99 -5.10 16.88 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 23 C -0.17 -3.50 8.68 -39.37 -0.34 -3.84 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.34 4.27 8.81 -39.29 -0.35 3.92 16 29 H 0.07 0.90 8.08 -51.93 -0.42 0.49 16 30 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.39 7.15 8.84 -40.82 -0.36 6.79 16 34 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.11 2.71 6.49 -52.48 -0.34 2.37 16 38 H 0.30 7.94 6.67 -40.82 -0.27 7.67 16 39 H 0.12 2.74 6.75 -52.49 -0.35 2.39 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -26.67 333.76 -10.39 -37.06 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -5.45 Total: 17.63 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -4.68 Total: -33.50 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.19 Total: -43.10 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.10 Total: 16.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.67 -10.39 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211131081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.282 kcal (2) G-P(sol) polarization free energy of solvation -26.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds