Wall clock time and date at job start Tue Mar 31 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00203 * 2 1 4 4 C 1.50706 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.38328 * 119.95542 * 269.71720 * 4 3 2 6 6 C 1.38278 * 120.15805 * 179.76372 * 5 4 3 7 7 C 1.38105 * 120.07863 * 0.51344 * 6 5 4 8 8 C 1.38946 * 119.91997 * 359.74549 * 7 6 5 9 9 N 1.39597 * 120.07883 * 180.02562 * 8 7 6 10 10 C 1.38810 * 120.00000 * 335.57339 * 9 8 7 11 11 C 1.39603 * 119.84898 * 327.30937 * 10 9 8 12 12 C 1.36308 * 120.16227 * 179.71674 * 11 10 9 13 13 C 1.40900 * 119.83730 * 0.54885 * 12 11 10 14 14 C 1.41108 * 120.15568 * 179.69891 * 13 12 11 15 15 H 1.08001 * 120.00282 * 207.49005 * 14 13 12 16 16 C 1.39849 * 119.99756 * 27.48525 * 14 13 12 17 17 N 1.30911 * 119.99941 * 12.69650 * 16 14 13 18 18 Si 1.86802 * 119.99846 * 192.70341 * 16 14 13 19 19 H 1.48497 * 109.47371 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47097 * 120.00308 * 18 16 14 21 21 H 1.48501 * 109.46660 * 240.00040 * 18 16 14 22 22 C 1.40905 * 119.69405 * 359.72923 * 13 12 11 23 23 C 1.36310 * 119.84140 * 359.97438 * 22 13 12 24 24 C 1.38057 * 119.96117 * 89.99227 * 4 3 2 25 25 H 1.09004 * 109.46484 * 60.00531 * 1 2 3 26 26 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47215 * 300.00995 * 1 2 3 28 28 H 1.00900 * 110.99959 * 123.94872 * 2 1 3 29 29 H 1.09003 * 109.46669 * 299.99411 * 3 2 1 30 30 H 1.08994 * 109.47489 * 59.99209 * 3 2 1 31 31 H 1.07998 * 119.92078 * 0.02562 * 5 4 3 32 32 H 1.07999 * 119.96035 * 180.23705 * 6 5 4 33 33 H 1.08008 * 120.04037 * 179.71965 * 7 6 5 34 34 H 0.96999 * 120.00244 * 155.58195 * 9 8 7 35 35 H 1.08007 * 119.91824 * 359.97438 * 11 10 9 36 36 H 1.08005 * 120.08557 * 180.30065 * 12 11 10 37 37 H 0.97004 * 119.99638 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.08066 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.92522 * 179.97438 * 23 22 13 40 40 H 1.07998 * 120.04327 * 359.96052 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 -0.0006 5 6 4.1931 1.3185 1.1976 6 6 5.5752 1.2767 1.2019 7 6 6.2709 1.2582 0.0090 8 6 5.5802 1.2763 -1.1965 9 7 6.2800 1.2571 -2.4042 10 6 7.5879 1.7193 -2.4559 11 6 7.9890 2.7642 -1.6216 12 6 9.2732 3.2193 -1.6630 13 6 10.1936 2.6401 -2.5589 14 6 11.5230 3.1103 -2.6118 15 1 12.0910 3.0221 -3.5262 16 6 12.1051 3.6905 -1.4803 17 7 11.5221 3.5777 -0.3136 18 14 13.7143 4.6267 -1.6338 19 1 14.1645 4.6086 -3.0487 20 1 13.5136 6.0312 -1.1955 21 1 14.7443 3.9838 -0.7788 22 6 9.7803 1.5898 -3.4023 23 6 8.4946 1.1406 -3.3460 24 6 4.1907 1.3128 -1.1970 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 1.8305 -0.5261 0.7814 29 1 1.6460 1.8947 -0.8901 30 1 1.6459 1.8949 0.8898 31 1 3.6518 1.3370 2.1319 32 1 6.1115 1.2630 2.1392 33 1 7.3506 1.2301 0.0131 34 1 5.8523 0.9209 -3.2073 35 1 7.2811 3.2104 -0.9386 36 1 9.5835 4.0245 -1.0134 37 1 11.9260 3.9798 0.4713 38 1 10.4805 1.1416 -4.0917 39 1 8.1762 0.3359 -3.9920 40 1 3.6506 1.3266 -2.1321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211138129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:29 Heat of formation + Delta-G solvation = 46.842512 kcal Electronic energy + Delta-G solvation = -20604.651274 eV Core-core repulsion = 17576.324228 eV Total energy + Delta-G solvation = -3028.327046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.51644 -37.84831 -36.18270 -34.80694 -33.10632 -31.17248 -29.89037 -29.59558 -27.97599 -26.57466 -24.70551 -23.59076 -22.26946 -21.24661 -20.86222 -19.76749 -17.36023 -16.81641 -16.55749 -15.67680 -15.59544 -15.15330 -14.70863 -14.45529 -14.00974 -13.90627 -13.54589 -13.15499 -12.83116 -12.49363 -12.37920 -12.15797 -12.07858 -11.80807 -11.79248 -11.55357 -11.20685 -11.08158 -10.84950 -10.62232 -10.55643 -10.06793 -9.78342 -9.40766 -9.13803 -8.67250 -8.40847 -7.81229 -7.59056 -6.75059 -6.50163 -4.26761 1.73743 1.85984 2.76826 3.00653 3.07906 3.12872 3.18236 3.93731 4.03522 4.12354 4.43449 4.65713 4.90196 5.04372 5.19181 5.26991 5.40117 5.54309 5.57176 5.63974 5.65279 5.79247 5.99530 6.14780 6.16932 6.24917 6.35973 6.76369 6.79394 6.81098 6.88341 6.94084 7.00337 7.04880 7.19253 7.22633 7.29356 7.51818 7.56155 7.77077 8.01113 8.16474 8.34302 8.48529 8.62454 8.88405 8.96505 10.21569 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003212 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.568987 B = 8714.873289 C = 9275.119531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.101 3.899 4 C -0.054 4.054 5 C -0.177 4.177 6 C -0.082 4.082 7 C -0.170 4.170 8 C 0.212 3.788 9 N -0.674 5.674 10 C 0.029 3.971 11 C -0.124 4.124 12 C -0.139 4.139 13 C 0.096 3.904 14 C -0.459 4.459 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.801 5.801 18 Si 0.909 3.091 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.120 4.120 24 C -0.173 4.173 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.020 0.980 28 H 0.343 0.657 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.395 0.605 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.279 0.721 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 -3.234 2.664 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.320 5.320 3 C -0.027 4.027 4 C -0.055 4.055 5 C -0.198 4.198 6 C -0.101 4.101 7 C -0.192 4.192 8 C 0.109 3.891 9 N -0.294 5.294 10 C -0.065 4.065 11 C -0.144 4.144 12 C -0.159 4.159 13 C 0.093 3.907 14 C -0.489 4.489 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.427 5.427 18 Si 0.734 3.266 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.224 4.224 23 C -0.140 4.140 24 C -0.196 4.196 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.038 0.962 28 H 0.161 0.839 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.229 0.771 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.941 -3.178 2.244 14.474 hybrid contribution 0.426 0.508 0.674 0.946 sum -13.514 -2.670 2.918 14.081 Atomic orbital electron populations 1.22205 0.87995 1.01783 1.00287 1.60422 1.07230 1.14020 1.50357 1.20872 0.91379 0.89597 1.00848 1.19286 0.93818 0.99508 0.92909 1.20654 0.94232 1.08294 0.96580 1.20849 0.93793 0.98062 0.97418 1.21110 1.00944 1.06078 0.91044 1.17841 0.90549 0.93980 0.86736 1.41654 1.12418 1.67928 1.07427 1.17197 0.83883 1.00277 1.05177 1.20400 0.96948 0.96498 1.00557 1.21013 0.91114 1.01548 1.02196 1.17643 0.93152 0.89464 0.90428 1.19522 0.97598 1.34028 0.97762 0.90518 1.25885 0.99336 0.94507 0.94711 1.69834 1.38415 1.35061 0.99377 0.86244 0.81224 0.79575 0.79558 1.18516 1.19804 1.20044 1.20615 0.94994 1.00868 1.05905 1.20080 0.93588 0.99617 1.00764 1.20446 0.92014 1.09433 0.97699 0.91749 0.91469 0.96193 0.83885 0.90486 0.94591 0.87409 0.86539 0.85070 0.77105 0.88790 0.85945 0.91024 0.88680 0.89224 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.70 60.06 0.64 0.86 16 2 N -0.69 -7.23 6.84 -122.42 -0.84 -8.07 16 3 C 0.10 1.13 5.81 -4.97 -0.03 1.10 16 4 C -0.05 -0.75 5.39 -104.65 -0.56 -1.31 16 5 C -0.18 -2.45 9.70 -39.53 -0.38 -2.83 16 6 C -0.08 -1.28 10.04 -39.62 -0.40 -1.67 16 7 C -0.17 -3.07 7.86 -39.37 -0.31 -3.38 16 8 C 0.21 3.73 6.06 -83.78 -0.51 3.22 16 9 N -0.67 -12.29 5.42 -8.30 -0.05 -12.34 16 10 C 0.03 0.62 5.91 -83.68 -0.49 0.12 16 11 C -0.12 -2.86 7.63 -39.77 -0.30 -3.16 16 12 C -0.14 -3.54 8.61 -39.27 -0.34 -3.88 16 13 C 0.10 2.51 5.56 -106.79 -0.59 1.91 16 14 C -0.46 -12.00 9.04 -37.89 -0.34 -12.34 16 15 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 16 C 0.07 1.79 5.22 -17.34 -0.09 1.70 16 17 N -0.80 -20.50 10.85 55.54 0.60 -19.90 16 18 Si 0.91 18.59 29.58 -169.99 -5.03 13.56 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.20 -4.88 9.74 -39.27 -0.38 -5.26 16 23 C -0.12 -2.62 9.89 -39.76 -0.39 -3.01 16 24 C -0.17 -2.65 9.59 -39.37 -0.38 -3.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.34 3.40 8.81 -39.29 -0.35 3.05 16 29 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.13 2.69 6.27 -52.48 -0.33 2.36 16 34 H 0.39 6.24 8.88 -40.82 -0.36 5.88 16 35 H 0.09 2.10 6.58 -52.48 -0.35 1.75 16 36 H 0.12 3.25 6.18 -52.48 -0.32 2.92 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -27.10 334.52 -10.61 -37.71 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -5.48 Total: 14.95 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -4.86 Total: -30.97 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.28 Total: -40.30 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.10 -10.61 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211138129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.556 kcal (2) G-P(sol) polarization free energy of solvation -27.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds