Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 111.00033 * 2 1 4 4 C 1.50691 * 109.47190 * 180.02562 * 3 2 1 5 5 C 1.38312 * 119.96635 * 269.72504 * 4 3 2 6 6 C 1.38270 * 120.15752 * 179.76834 * 5 4 3 7 7 C 1.38115 * 120.07289 * 0.50558 * 6 5 4 8 8 C 1.38901 * 119.92448 * 359.74974 * 7 6 5 9 9 N 1.39719 * 120.07848 * 179.97438 * 8 7 6 10 10 C 1.39719 * 119.99946 * 328.14211 * 9 8 7 11 11 C 1.39349 * 119.95193 * 331.10272 * 10 9 8 12 12 C 1.38475 * 120.42224 * 179.72058 * 11 10 9 13 13 C 1.37688 * 120.32736 * 0.55444 * 12 11 10 14 14 C 1.40756 * 119.89550 * 359.72894 * 13 12 11 15 15 C 1.41408 * 120.20753 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00125 * 152.43881 * 15 14 13 17 17 C 1.39920 * 120.00001 * 332.43651 * 15 14 13 18 18 N 1.30833 * 120.00378 * 340.18309 * 17 15 14 19 19 Si 1.86808 * 120.00073 * 160.18269 * 17 15 14 20 20 H 1.48495 * 109.47181 * 94.98037 * 19 17 15 21 21 H 1.48505 * 109.46928 * 214.98229 * 19 17 15 22 22 H 1.48503 * 109.46794 * 334.97732 * 19 17 15 23 23 C 1.38298 * 119.95433 * 151.38280 * 10 9 8 24 24 C 1.38076 * 119.96477 * 90.00145 * 4 3 2 25 25 H 1.08995 * 109.47158 * 299.99690 * 1 2 3 26 26 H 1.09002 * 109.47188 * 60.00068 * 1 2 3 27 27 H 1.08997 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.00900 * 110.99826 * 123.95747 * 2 1 3 29 29 H 1.09002 * 109.47060 * 300.00603 * 3 2 1 30 30 H 1.09001 * 109.47215 * 59.99714 * 3 2 1 31 31 H 1.08003 * 119.91660 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.96411 * 180.25960 * 6 5 4 33 33 H 1.08001 * 120.03989 * 179.77017 * 7 6 5 34 34 H 0.97001 * 119.99777 * 148.13565 * 9 8 7 35 35 H 1.08002 * 119.79158 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.83529 * 180.28384 * 12 11 10 37 37 H 1.07995 * 120.05159 * 179.74130 * 13 12 11 38 38 H 0.97000 * 120.00200 * 179.97438 * 18 17 15 39 39 H 1.07989 * 120.16330 * 359.97032 * 23 10 9 40 40 H 1.08005 * 120.03527 * 359.95895 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1932 1.3183 1.1973 6 6 5.5752 1.2766 1.2013 7 6 6.2706 1.2582 0.0082 8 6 5.5798 1.2764 -1.1968 9 7 6.2800 1.2584 -2.4057 10 6 7.5357 1.8647 -2.4948 11 6 7.8442 2.9494 -1.6763 12 6 9.0876 3.5540 -1.7525 13 6 10.0295 3.0966 -2.6466 14 6 9.7302 2.0055 -3.4840 15 6 10.6924 1.5307 -4.4051 16 1 10.6802 0.4957 -4.7134 17 6 11.6603 2.4018 -4.9171 18 7 11.4667 3.6949 -4.8710 19 14 13.2290 1.7184 -5.6667 20 1 13.0650 1.6025 -7.1380 21 1 14.3604 2.6319 -5.3652 22 1 13.5088 0.3778 -5.0926 23 6 8.4685 1.3910 -3.3993 24 6 4.1908 1.3130 -1.1971 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8306 -0.5262 0.7813 29 1 1.6459 1.8948 -0.8899 30 1 1.6460 1.8948 0.8900 31 1 3.6519 1.3367 2.1317 32 1 6.1117 1.2625 2.1386 33 1 7.3502 1.2294 0.0119 34 1 5.8944 0.8249 -3.1831 35 1 7.1105 3.3179 -0.9746 36 1 9.3183 4.3912 -1.1104 37 1 10.9964 3.5740 -2.7052 38 1 12.1379 4.2987 -5.2256 39 1 8.2292 0.5530 -4.0370 40 1 3.6506 1.3269 -2.1322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211139937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = 43.836204 kcal Electronic energy + Delta-G solvation = -20498.353199 eV Core-core repulsion = 17469.895790 eV Total energy + Delta-G solvation = -3028.457409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.57601 -37.77977 -36.19805 -34.77719 -33.18060 -31.25629 -29.99513 -29.70856 -27.07597 -26.69083 -25.23486 -23.69116 -22.26604 -21.43878 -20.69637 -19.89617 -17.48797 -16.84342 -16.18475 -15.75443 -15.48507 -14.94432 -14.72039 -14.65382 -14.45728 -13.97643 -13.58533 -13.18746 -12.89593 -12.56370 -12.39891 -12.29279 -12.16349 -11.92224 -11.69148 -11.40867 -11.25290 -11.07714 -10.76578 -10.66840 -10.54113 -9.95191 -9.87600 -9.45255 -9.09876 -8.73082 -8.50150 -7.98112 -7.47863 -6.79082 -6.40532 -4.38023 1.62377 1.72813 2.78827 3.04900 3.07703 3.12022 3.22353 3.92137 3.95733 4.01777 4.36081 4.63111 4.83211 4.97985 5.14441 5.21625 5.32030 5.42878 5.51375 5.61831 5.66584 5.68776 5.87307 6.04245 6.21100 6.28934 6.46183 6.70104 6.71210 6.72723 6.83016 6.92063 6.97048 7.02650 7.14467 7.18126 7.23586 7.33022 7.71553 7.80618 8.02921 8.07998 8.37952 8.40884 8.64846 8.89177 8.96653 10.18473 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039549 B = 0.003013 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.817005 B = 9289.349367 C = 9607.948947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.101 3.899 4 C -0.059 4.059 5 C -0.165 4.165 6 C -0.090 4.090 7 C -0.156 4.156 8 C 0.206 3.794 9 N -0.691 5.691 10 C 0.187 3.813 11 C -0.269 4.269 12 C -0.083 4.083 13 C -0.180 4.180 14 C 0.135 3.865 15 C -0.468 4.468 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.791 5.791 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.260 4.260 24 C -0.159 4.159 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.343 0.657 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.400 0.600 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.280 0.720 39 H 0.094 0.906 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 -3.692 8.664 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.320 5.320 3 C -0.028 4.028 4 C -0.060 4.060 5 C -0.186 4.186 6 C -0.108 4.108 7 C -0.178 4.178 8 C 0.106 3.894 9 N -0.313 5.313 10 C 0.093 3.907 11 C -0.291 4.291 12 C -0.102 4.102 13 C -0.200 4.200 14 C 0.132 3.868 15 C -0.497 4.497 16 H 0.096 0.904 17 C -0.139 4.139 18 N -0.416 5.416 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.283 4.283 24 C -0.182 4.182 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.147 0.853 34 H 0.235 0.765 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.243 -3.463 7.939 15.824 hybrid contribution 0.385 -0.015 0.144 0.412 sum -12.858 -3.478 8.083 15.581 Atomic orbital electron populations 1.22209 0.87889 1.01846 1.00331 1.60418 1.07328 1.13940 1.50343 1.20874 0.91207 0.89684 1.00985 1.19336 0.94023 0.99780 0.92879 1.20714 0.94253 1.06914 0.96693 1.20855 0.93846 0.98750 0.97388 1.21116 1.00794 1.04745 0.91138 1.17779 0.90493 0.94557 0.86614 1.42202 1.18490 1.60727 1.09832 1.17439 0.83555 0.92277 0.97422 1.20133 0.98950 1.01495 1.08490 1.20482 0.93651 0.97983 0.98086 1.21158 0.99435 1.01496 0.97945 1.17352 0.89884 0.89941 0.89659 1.19508 1.10544 0.97102 1.22564 0.90434 1.25874 0.99095 0.94381 0.94520 1.69851 1.33506 1.03403 1.34795 0.86375 0.81011 0.80258 0.79533 1.19623 1.20030 1.18401 1.20653 0.94103 1.06640 1.06865 1.20619 0.92259 1.07407 0.97869 0.96160 0.91698 0.91421 0.83911 0.90367 0.94524 0.87204 0.86425 0.85268 0.76499 0.88999 0.89212 0.87161 0.90878 0.88827 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.70 60.07 0.64 0.85 16 2 N -0.69 -6.92 6.84 -122.42 -0.84 -7.75 16 3 C 0.10 1.07 5.81 -4.98 -0.03 1.04 16 4 C -0.06 -0.77 5.39 -104.66 -0.56 -1.34 16 5 C -0.17 -2.11 9.70 -39.54 -0.38 -2.49 16 6 C -0.09 -1.25 10.04 -39.61 -0.40 -1.65 16 7 C -0.16 -2.62 7.90 -39.38 -0.31 -2.93 16 8 C 0.21 3.52 5.87 -83.75 -0.49 3.03 16 9 N -0.69 -12.81 5.45 -8.45 -0.05 -12.86 16 10 C 0.19 4.15 5.94 -83.83 -0.50 3.66 16 11 C -0.27 -6.04 7.98 -39.08 -0.31 -6.35 16 12 C -0.08 -1.94 10.01 -39.70 -0.40 -2.34 16 13 C -0.18 -4.66 8.68 -38.83 -0.34 -5.00 16 14 C 0.13 3.57 5.53 -106.85 -0.59 2.98 16 15 C -0.47 -12.35 9.02 -37.75 -0.34 -12.69 16 16 H 0.08 1.98 7.92 -52.49 -0.42 1.56 16 17 C 0.08 1.99 5.06 -17.35 -0.09 1.91 16 18 N -0.79 -20.44 11.30 55.55 0.63 -19.82 16 19 Si 0.90 18.56 29.60 -169.99 -5.03 13.53 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 23 C -0.26 -6.32 9.69 -38.67 -0.37 -6.70 16 24 C -0.16 -2.37 9.61 -39.38 -0.38 -2.75 16 25 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.34 3.19 8.81 -39.29 -0.35 2.85 16 29 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.13 2.37 6.72 -52.49 -0.35 2.02 16 34 H 0.40 6.64 8.90 -40.82 -0.36 6.28 16 35 H 0.09 1.96 6.58 -52.49 -0.35 1.61 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.11 2.93 6.47 -52.49 -0.34 2.59 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -27.71 336.01 -10.59 -38.30 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.52 Total: 14.31 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -4.85 Total: -30.77 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.26 Total: -40.43 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.71 -10.59 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211139937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.136 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds