Wall clock time and date at job start Tue Mar 31 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46848 * 2 1 4 4 C 1.38045 * 119.99813 * 265.00023 * 3 2 1 5 5 C 1.38944 * 119.99326 * 180.02562 * 4 3 2 6 6 N 1.39796 * 120.00366 * 180.02562 * 5 4 3 7 7 C 1.38609 * 120.00271 * 194.04271 * 6 5 4 8 8 C 1.38847 * 120.30364 * 253.89151 * 7 6 5 9 9 C 1.38088 * 120.01851 * 180.25464 * 8 7 6 10 10 C 1.38943 * 120.63857 * 359.73834 * 9 8 7 11 11 C 1.36424 * 120.61270 * 359.97438 * 10 9 8 12 12 C 1.40736 * 119.95106 * 0.02562 * 11 10 9 13 13 C 1.41003 * 120.30946 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00471 * 207.44563 * 13 12 11 15 15 C 1.39893 * 119.99745 * 27.44768 * 13 12 11 16 16 N 1.30904 * 119.99784 * 203.72726 * 15 13 12 17 17 Si 1.86801 * 120.00131 * 23.72642 * 15 13 12 18 18 H 1.48496 * 109.46788 * 263.18593 * 17 15 13 19 19 H 1.48505 * 109.47103 * 23.18276 * 17 15 13 20 20 H 1.48499 * 109.46907 * 143.18435 * 17 15 13 21 21 C 1.38976 * 119.99148 * 0.27880 * 5 4 3 22 22 C 1.38007 * 119.99150 * 359.46940 * 21 5 4 23 23 C 1.38892 * 119.99419 * 85.02425 * 3 2 1 24 24 N 1.39885 * 119.99873 * 359.97434 * 23 3 2 25 25 H 1.09003 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47170 * 299.99733 * 1 2 3 27 27 H 1.09004 * 109.47492 * 60.00281 * 1 2 3 28 28 H 1.09001 * 109.47170 * 240.00267 * 2 1 3 29 29 H 1.09000 * 109.47475 * 120.00209 * 2 1 3 30 30 H 1.08005 * 120.00470 * 0.02562 * 4 3 2 31 31 H 0.97002 * 120.00607 * 14.04161 * 6 5 4 32 32 H 1.07995 * 119.98626 * 359.97438 * 8 7 6 33 33 H 1.08001 * 119.68059 * 179.76585 * 9 8 7 34 34 H 1.08006 * 119.69608 * 180.02562 * 10 9 8 35 35 H 1.08004 * 120.02291 * 180.02562 * 11 10 9 36 36 H 0.96998 * 120.00315 * 355.05157 * 16 15 13 37 37 H 1.07996 * 120.00484 * 179.72579 * 21 5 4 38 38 H 1.08002 * 119.99999 * 180.23494 * 22 21 5 39 39 H 0.97000 * 119.99991 * 0.02562 * 24 23 3 40 40 H 0.97003 * 120.00013 * 180.02562 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3605 2.0369 -1.1910 5 6 2.8241 3.3467 -1.1908 6 7 3.1561 3.9709 -2.3968 7 6 3.8832 5.1509 -2.3893 8 6 3.2612 6.3589 -2.6753 9 6 3.9923 7.5304 -2.6713 10 6 5.3503 7.5165 -2.3776 11 6 5.9863 6.3451 -2.0872 12 6 5.2656 5.1362 -2.0841 13 6 5.9155 3.9211 -1.7855 14 1 5.5383 2.9933 -2.1898 15 6 7.0490 3.9172 -0.9656 16 7 7.9119 2.9362 -1.0465 17 14 7.3310 5.3118 0.2448 18 1 8.2520 6.3098 -0.3560 19 1 6.0342 5.9625 0.5612 20 1 7.9310 4.7717 1.4912 21 6 2.9627 4.0344 0.0089 22 6 2.6294 3.4199 1.1988 23 6 2.1653 2.1103 1.1984 24 7 1.8325 1.4859 2.4051 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.2570 1.5007 -2.1228 31 1 2.8776 3.5783 -3.2390 32 1 2.2063 6.3817 -2.9053 33 1 3.5038 8.4664 -2.8982 34 1 5.9074 8.4418 -2.3784 35 1 7.0422 6.3454 -1.8599 36 1 7.7305 2.1768 -1.6221 37 1 3.3272 5.0510 0.0096 38 1 2.7335 3.9555 2.1308 39 1 1.5093 0.5714 2.4050 40 1 1.9251 1.9675 3.2421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216039612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:37 Heat of formation + Delta-G solvation = 35.336221 kcal Electronic energy + Delta-G solvation = -21824.706857 eV Core-core repulsion = 18795.880861 eV Total energy + Delta-G solvation = -3028.825996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.33742 -38.00239 -35.38022 -33.71685 -33.31681 -32.54380 -30.19414 -29.37899 -28.42741 -26.28408 -24.49929 -23.58074 -21.71526 -21.44333 -20.69195 -19.26279 -18.11073 -17.02889 -16.47374 -15.97471 -15.77726 -14.66911 -14.38649 -14.02329 -13.95613 -13.80162 -13.19820 -13.12232 -12.81648 -12.67545 -12.53161 -12.11223 -11.93306 -11.72880 -11.47518 -11.26135 -10.98999 -10.87864 -10.66132 -10.55183 -10.18953 -10.15234 -9.84216 -9.46387 -9.04341 -8.33445 -8.10557 -7.72927 -7.59539 -7.23814 -6.01164 -4.47814 2.07006 2.41738 2.65917 2.72313 3.20933 3.37686 3.54331 4.02573 4.36631 4.49294 4.57236 4.63905 5.14409 5.19206 5.39717 5.52663 5.56944 5.77867 5.90431 5.99804 6.03285 6.07519 6.11901 6.17581 6.29321 6.38273 6.46613 6.68551 6.71059 6.88541 6.97892 7.01686 7.17957 7.27783 7.42772 7.49880 7.59741 7.70337 7.85326 7.96922 8.03875 8.23086 8.31316 8.50740 8.64257 8.73059 8.99508 9.99122 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.006283 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.354561 B = 4455.108603 C = 5168.087281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.122 4.122 4 C -0.157 4.157 5 C 0.196 3.804 6 N -0.678 5.678 7 C 0.019 3.981 8 C -0.078 4.078 9 C -0.250 4.250 10 C -0.076 4.076 11 C -0.235 4.235 12 C 0.094 3.906 13 C -0.489 4.489 14 H 0.078 0.922 15 C 0.046 3.954 16 N -0.808 5.808 17 Si 1.068 2.932 18 H -0.278 1.278 19 H -0.261 1.261 20 H -0.290 1.290 21 C -0.123 4.123 22 C -0.152 4.152 23 C 0.152 3.848 24 N -0.891 5.891 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.387 0.613 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.287 0.713 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.389 0.611 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 -2.582 3.725 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.127 4.127 4 C -0.180 4.180 5 C 0.094 3.906 6 N -0.302 5.302 7 C -0.075 4.075 8 C -0.098 4.098 9 C -0.270 4.270 10 C -0.094 4.094 11 C -0.255 4.255 12 C 0.089 3.911 13 C -0.517 4.517 14 H 0.096 0.904 15 C -0.175 4.175 16 N -0.430 5.430 17 Si 0.894 3.106 18 H -0.205 1.205 19 H -0.185 1.185 20 H -0.217 1.217 21 C -0.146 4.146 22 C -0.174 4.174 23 C 0.050 3.950 24 N -0.434 5.434 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.221 0.779 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.217 0.783 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -8.929 -1.946 4.779 10.313 hybrid contribution -1.010 -0.993 -1.275 1.906 sum -9.939 -2.939 3.503 10.941 Atomic orbital electron populations 1.21748 0.95559 1.00723 1.02177 1.20270 0.95359 0.93564 1.01784 1.18852 1.06496 0.95740 0.91574 1.20146 1.07541 0.93427 0.96897 1.17621 0.95253 0.90858 0.86912 1.41001 1.59862 1.25244 1.04077 1.17246 0.89663 0.84793 1.15784 1.20880 0.97339 0.92358 0.99253 1.20177 0.94609 0.96331 1.15839 1.20374 0.94467 0.96522 0.98062 1.20708 0.98688 0.93266 1.12829 1.17960 0.90268 0.92830 0.90046 1.20422 1.09964 0.94811 1.26487 0.90357 1.27255 0.90464 1.02062 0.97682 1.70555 1.30922 1.08047 1.33494 0.83655 0.78007 0.73903 0.75041 1.20482 1.18517 1.21701 1.20490 1.03055 1.00305 0.90743 1.20290 1.05602 0.93794 0.97756 1.17268 0.99705 0.92212 0.85821 1.42279 1.78739 1.16968 1.05418 0.93198 0.92780 0.92627 0.91613 0.92141 0.87269 0.77897 0.88915 0.88993 0.88970 0.88119 0.90200 0.86151 0.87131 0.78338 0.78407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.15 0.37 -1.23 16 2 C -0.07 -0.94 5.49 -27.88 -0.15 -1.09 16 3 C -0.12 -2.01 5.15 -104.45 -0.54 -2.54 16 4 C -0.16 -2.84 9.54 -39.39 -0.38 -3.22 16 5 C 0.20 3.97 6.00 -83.69 -0.50 3.47 16 6 N -0.68 -13.89 4.74 -8.00 -0.04 -13.93 16 7 C 0.02 0.43 4.50 -83.30 -0.38 0.06 16 8 C -0.08 -1.65 9.96 -39.41 -0.39 -2.04 16 9 C -0.25 -5.15 10.03 -39.38 -0.40 -5.55 16 10 C -0.08 -1.63 9.96 -39.97 -0.40 -2.03 16 11 C -0.24 -5.62 7.31 -39.29 -0.29 -5.90 16 12 C 0.09 2.33 5.02 -106.63 -0.54 1.80 16 13 C -0.49 -12.92 8.50 -37.92 -0.32 -13.24 16 14 H 0.08 2.20 7.80 -52.49 -0.41 1.79 16 15 C 0.05 1.21 5.33 -17.33 -0.09 1.12 16 16 N -0.81 -21.82 13.66 55.55 0.76 -21.07 16 17 Si 1.07 24.65 25.03 -169.99 -4.25 20.40 16 18 H -0.28 -6.11 6.70 56.52 0.38 -5.73 16 19 H -0.26 -5.98 7.03 56.52 0.40 -5.58 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 C -0.12 -2.56 9.25 -39.39 -0.36 -2.92 16 22 C -0.15 -2.76 9.89 -39.40 -0.39 -3.15 16 23 C 0.15 2.51 6.74 -83.68 -0.56 1.95 16 24 N -0.89 -11.24 9.00 32.46 0.29 -10.95 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.06 0.72 6.81 -51.93 -0.35 0.37 16 30 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.39 7.10 8.86 -40.82 -0.36 6.74 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.10 2.41 4.85 -52.48 -0.25 2.15 16 36 H 0.29 7.59 8.73 -40.82 -0.36 7.23 16 37 H 0.12 2.70 7.06 -52.49 -0.37 2.33 16 38 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.39 4.21 6.93 -40.82 -0.28 3.93 16 40 H 0.39 4.22 8.84 -40.82 -0.36 3.86 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -27.70 328.48 -8.98 -36.69 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -5.37 Total: 18.44 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -5.32 Total: -34.53 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 1.01 Total: -45.94 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.25 Total: 20.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.70 -8.98 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216039612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.022 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds