Wall clock time and date at job start Tue Mar 31 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47081 * 2 1 4 4 C 1.38097 * 120.00012 * 265.27651 * 3 2 1 5 5 C 1.38856 * 119.99905 * 180.20756 * 4 3 2 6 6 N 1.40007 * 120.00355 * 179.78826 * 5 4 3 7 7 C 1.39695 * 120.00400 * 151.46808 * 6 5 4 8 8 C 1.39361 * 119.94903 * 324.03818 * 7 6 5 9 9 C 1.38471 * 120.42041 * 179.97438 * 8 7 6 10 10 C 1.37694 * 120.32792 * 0.04387 * 9 8 7 11 11 C 1.40758 * 119.89573 * 359.97438 * 10 9 8 12 12 C 1.41406 * 120.20476 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00189 * 335.54177 * 12 11 10 14 14 C 1.39926 * 120.00264 * 155.54411 * 12 11 10 15 15 N 1.30834 * 119.99778 * 340.60783 * 14 12 11 16 16 Si 1.86797 * 120.00444 * 160.60748 * 14 12 11 17 17 H 1.48497 * 109.47121 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47223 * 120.00268 * 16 14 12 19 19 H 1.48498 * 109.46906 * 240.00201 * 16 14 12 20 20 C 1.38294 * 119.95802 * 144.06506 * 7 6 5 21 21 C 1.38911 * 119.99783 * 359.51598 * 5 4 3 22 22 C 1.38050 * 119.99591 * 0.24975 * 21 5 4 23 23 C 1.38851 * 119.99835 * 84.99419 * 3 2 1 24 24 N 1.39970 * 119.99900 * 0.04901 * 23 3 2 25 25 H 1.09004 * 109.47273 * 300.00131 * 1 2 3 26 26 H 1.09003 * 109.47158 * 60.00280 * 1 2 3 27 27 H 1.08996 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47551 * 239.99735 * 2 1 3 29 29 H 1.09003 * 109.47158 * 119.99720 * 2 1 3 30 30 H 1.07999 * 119.99971 * 359.97438 * 4 3 2 31 31 H 0.96999 * 120.00114 * 331.47068 * 6 5 4 32 32 H 1.08001 * 119.79461 * 0.02562 * 8 7 6 33 33 H 1.07997 * 119.83762 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.04972 * 180.02562 * 10 9 8 35 35 H 0.96995 * 120.00353 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.16192 * 0.26864 * 20 7 6 37 37 H 1.08001 * 120.00125 * 180.27323 * 21 5 4 38 38 H 1.08000 * 119.99590 * 180.02562 * 22 21 5 39 39 H 0.97002 * 119.99572 * 179.97438 * 24 23 3 40 40 H 0.97001 * 120.00534 * 359.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3553 2.0390 -1.1919 5 6 2.8223 3.3467 -1.1915 6 7 3.1540 3.9720 -2.3995 7 6 3.0445 5.3594 -2.5210 8 6 2.0086 6.0345 -1.8782 9 6 1.8912 7.4096 -1.9916 10 6 2.7970 8.1252 -2.7421 11 6 3.8484 7.4570 -3.3974 12 6 4.7820 8.1854 -4.1704 13 1 4.5062 9.1414 -4.5907 14 6 6.0632 7.6677 -4.3908 15 7 6.5354 6.7339 -3.6054 16 14 7.0993 8.3098 -5.8062 17 1 6.3418 9.3555 -6.5396 18 1 8.3581 8.8909 -5.2744 19 1 7.4214 7.1929 -6.7303 20 6 3.9639 6.0609 -3.2794 21 6 2.9549 4.0365 0.0069 22 6 2.6274 3.4200 1.1979 23 6 2.1648 2.1104 1.1979 24 7 1.8328 1.4854 2.4055 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2483 1.5041 -2.1240 31 1 3.4598 3.4420 -3.1520 32 1 1.2933 5.4819 -1.2871 33 1 1.0850 7.9233 -1.4891 34 1 2.7014 9.1976 -2.8272 35 1 7.4236 6.3753 -3.7579 36 1 4.7644 5.5382 -3.7819 37 1 3.3139 5.0551 0.0069 38 1 2.7301 3.9564 2.1297 39 1 1.9257 1.9670 3.2424 40 1 1.5097 0.5708 2.4056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216040310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:43 Heat of formation + Delta-G solvation = 34.830192 kcal Electronic energy + Delta-G solvation = -20995.640204 eV Core-core repulsion = 17966.792265 eV Total energy + Delta-G solvation = -3028.847939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.57887 -37.81377 -35.62566 -33.60060 -33.52607 -32.60189 -29.70006 -29.36047 -28.42316 -26.16396 -25.22620 -23.77012 -22.02294 -21.00142 -20.88139 -19.48725 -17.35857 -17.08128 -16.60461 -16.01985 -15.58572 -14.75545 -14.59492 -14.18595 -14.02691 -13.65777 -13.36702 -13.12108 -12.98899 -12.73911 -12.31684 -12.16396 -11.97214 -11.68441 -11.56589 -11.39160 -11.06098 -10.96089 -10.74276 -10.62459 -10.44605 -10.32681 -9.71008 -9.66894 -9.22606 -8.80778 -8.38301 -7.37486 -7.30102 -6.75422 -6.07180 -4.34338 1.78886 2.06837 2.81836 3.08540 3.11307 3.14221 3.25613 3.95138 4.10466 4.25841 4.30989 4.66745 4.95827 5.01141 5.31712 5.39110 5.58364 5.72515 5.73099 5.78717 5.88410 5.93260 6.11012 6.19901 6.28557 6.43052 6.57812 6.62935 6.72789 6.84984 6.93991 7.08246 7.10563 7.21660 7.33480 7.42103 7.72902 7.86913 7.93612 7.97928 8.04174 8.11822 8.43285 8.59848 8.76260 8.93434 9.02165 10.20578 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.003722 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.398086 B = 7520.540903 C = 7845.907551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.163 3.837 6 N -0.693 5.693 7 C 0.179 3.821 8 C -0.266 4.266 9 C -0.076 4.076 10 C -0.242 4.242 11 C 0.129 3.871 12 C -0.465 4.465 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.789 5.789 16 Si 0.904 3.096 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.273 1.273 20 C -0.200 4.200 21 C -0.115 4.115 22 C -0.159 4.159 23 C 0.167 3.833 24 N -0.888 5.888 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.279 0.721 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.391 0.609 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 -11.346 6.980 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.135 4.135 4 C -0.161 4.161 5 C 0.063 3.937 6 N -0.316 5.316 7 C 0.085 3.915 8 C -0.288 4.288 9 C -0.095 4.095 10 C -0.262 4.262 11 C 0.126 3.874 12 C -0.494 4.494 13 H 0.096 0.904 14 C -0.140 4.140 15 N -0.414 5.414 16 Si 0.728 3.272 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.198 1.198 20 C -0.222 4.222 21 C -0.137 4.137 22 C -0.182 4.182 23 C 0.064 3.936 24 N -0.431 5.431 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.218 0.782 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.947 -11.337 7.017 14.599 hybrid contribution 0.667 -0.032 -0.523 0.848 sum -5.280 -11.369 6.494 14.118 Atomic orbital electron populations 1.21763 0.95338 1.00948 1.02393 1.20284 0.95631 0.93190 1.01866 1.18949 1.06913 0.96158 0.91521 1.20370 1.03584 0.95068 0.97067 1.17586 0.97707 0.92025 0.86429 1.42021 1.72872 1.05113 1.11608 1.17549 0.94141 0.81203 0.98621 1.20175 1.01595 0.94369 1.12637 1.20347 0.97524 0.93412 0.98194 1.20945 1.01446 0.97650 1.06204 1.17371 0.90528 0.91094 0.88425 1.19580 0.96127 1.05299 1.28441 0.90370 1.25892 0.98358 0.94009 0.95745 1.69865 1.16801 1.22715 1.32035 0.86340 0.79495 0.79773 0.81584 1.18396 1.20065 1.19784 1.21003 0.99660 0.94071 1.07454 1.20837 1.01465 1.00959 0.90433 1.20353 1.06245 0.93653 0.97953 1.17371 0.98270 0.91990 0.85927 1.42376 1.78196 1.17100 1.05446 0.92734 0.92429 0.93006 0.91418 0.92078 0.86705 0.76913 0.89174 0.89348 0.89119 0.91045 0.86457 0.85339 0.86711 0.78161 0.78090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.07 -0.77 5.49 -27.88 -0.15 -0.92 16 3 C -0.13 -1.82 5.15 -104.44 -0.54 -2.35 16 4 C -0.14 -2.17 9.58 -39.40 -0.38 -2.54 16 5 C 0.16 2.99 5.94 -83.65 -0.50 2.49 16 6 N -0.69 -13.79 5.44 -8.41 -0.05 -13.83 16 7 C 0.18 4.16 5.73 -83.84 -0.48 3.68 16 8 C -0.27 -6.06 8.03 -39.08 -0.31 -6.37 16 9 C -0.08 -1.73 10.01 -39.69 -0.40 -2.13 16 10 C -0.24 -6.00 9.79 -38.83 -0.38 -6.38 16 11 C 0.13 3.44 5.57 -106.85 -0.59 2.84 16 12 C -0.46 -12.35 9.04 -37.74 -0.34 -12.69 16 13 H 0.08 2.01 7.92 -52.48 -0.42 1.59 16 14 C 0.08 1.96 5.10 -17.34 -0.09 1.87 16 15 N -0.79 -20.45 11.06 55.55 0.61 -19.83 16 16 Si 0.90 18.67 29.60 -169.99 -5.03 13.64 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 C -0.20 -5.14 8.61 -38.67 -0.33 -5.47 16 21 C -0.11 -2.11 8.15 -39.40 -0.32 -2.44 16 22 C -0.16 -2.48 9.89 -39.41 -0.39 -2.87 16 23 C 0.17 2.32 6.74 -83.67 -0.56 1.76 16 24 N -0.89 -9.07 9.00 32.46 0.29 -8.78 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.06 0.57 6.81 -51.93 -0.35 0.22 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.40 7.18 8.92 -40.82 -0.36 6.82 16 32 H 0.09 1.97 7.00 -52.49 -0.37 1.60 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.12 3.12 6.23 -52.49 -0.33 2.80 16 37 H 0.13 2.64 6.71 -52.49 -0.35 2.29 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.39 3.34 8.84 -40.82 -0.36 2.98 16 40 H 0.39 3.34 6.93 -40.82 -0.28 3.05 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -28.23 331.49 -9.91 -38.14 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -5.34 Total: 18.26 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -5.40 Total: -32.59 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.86 Total: -42.44 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.23 -9.91 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216040310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.970 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds