Wall clock time and date at job start Tue Mar 31 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47081 * 2 1 4 4 C 1.38097 * 120.00012 * 265.27651 * 3 2 1 5 5 C 1.38856 * 119.99905 * 180.20756 * 4 3 2 6 6 N 1.40007 * 120.00355 * 179.78826 * 5 4 3 7 7 C 1.39695 * 120.00400 * 151.46808 * 6 5 4 8 8 C 1.39361 * 119.94903 * 324.03818 * 7 6 5 9 9 C 1.38471 * 120.42041 * 179.97438 * 8 7 6 10 10 C 1.37694 * 120.32792 * 0.04387 * 9 8 7 11 11 C 1.40758 * 119.89573 * 359.97438 * 10 9 8 12 12 C 1.41406 * 120.20476 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00189 * 335.54177 * 12 11 10 14 14 C 1.39926 * 120.00264 * 155.54411 * 12 11 10 15 15 N 1.30834 * 119.99778 * 340.60783 * 14 12 11 16 16 Si 1.86797 * 120.00444 * 160.60748 * 14 12 11 17 17 H 1.48497 * 109.47121 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47223 * 120.00268 * 16 14 12 19 19 H 1.48498 * 109.46906 * 240.00201 * 16 14 12 20 20 C 1.38294 * 119.95802 * 144.06506 * 7 6 5 21 21 C 1.38911 * 119.99783 * 359.51598 * 5 4 3 22 22 C 1.38050 * 119.99591 * 0.24975 * 21 5 4 23 23 C 1.38851 * 119.99835 * 84.99419 * 3 2 1 24 24 N 1.39970 * 119.99900 * 0.04901 * 23 3 2 25 25 H 1.09004 * 109.47273 * 300.00131 * 1 2 3 26 26 H 1.09003 * 109.47158 * 60.00280 * 1 2 3 27 27 H 1.08996 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47551 * 239.99735 * 2 1 3 29 29 H 1.09003 * 109.47158 * 119.99720 * 2 1 3 30 30 H 1.07999 * 119.99971 * 359.97438 * 4 3 2 31 31 H 0.96999 * 120.00114 * 331.47068 * 6 5 4 32 32 H 1.08001 * 119.79461 * 0.02562 * 8 7 6 33 33 H 1.07997 * 119.83762 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.04972 * 180.02562 * 10 9 8 35 35 H 0.96995 * 120.00353 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.16192 * 0.26864 * 20 7 6 37 37 H 1.08001 * 120.00125 * 180.27323 * 21 5 4 38 38 H 1.08000 * 119.99590 * 180.02562 * 22 21 5 39 39 H 0.97002 * 119.99572 * 179.97438 * 24 23 3 40 40 H 0.97001 * 120.00534 * 359.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3553 2.0390 -1.1919 5 6 2.8223 3.3467 -1.1915 6 7 3.1540 3.9720 -2.3995 7 6 3.0445 5.3594 -2.5210 8 6 2.0086 6.0345 -1.8782 9 6 1.8912 7.4096 -1.9916 10 6 2.7970 8.1252 -2.7421 11 6 3.8484 7.4570 -3.3974 12 6 4.7820 8.1854 -4.1704 13 1 4.5062 9.1414 -4.5907 14 6 6.0632 7.6677 -4.3908 15 7 6.5354 6.7339 -3.6054 16 14 7.0993 8.3098 -5.8062 17 1 6.3418 9.3555 -6.5396 18 1 8.3581 8.8909 -5.2744 19 1 7.4214 7.1929 -6.7303 20 6 3.9639 6.0609 -3.2794 21 6 2.9549 4.0365 0.0069 22 6 2.6274 3.4200 1.1979 23 6 2.1648 2.1104 1.1979 24 7 1.8328 1.4854 2.4055 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2483 1.5041 -2.1240 31 1 3.4598 3.4420 -3.1520 32 1 1.2933 5.4819 -1.2871 33 1 1.0850 7.9233 -1.4891 34 1 2.7014 9.1976 -2.8272 35 1 7.4236 6.3753 -3.7579 36 1 4.7644 5.5382 -3.7819 37 1 3.3139 5.0551 0.0069 38 1 2.7301 3.9564 2.1297 39 1 1.9257 1.9670 3.2424 40 1 1.5097 0.5708 2.4056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216040310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:43 Heat of formation + Delta-G solvation = 19.907526 kcal Electronic energy + Delta-G solvation = -20996.287300 eV Core-core repulsion = 17966.792265 eV Total energy + Delta-G solvation = -3029.495035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.88291 -39.47695 -37.11847 -35.38069 -34.50967 -33.99770 -31.47504 -30.76416 -29.85146 -27.57312 -27.12837 -24.80600 -23.30634 -22.70417 -22.47583 -20.95725 -19.13395 -18.35107 -17.77657 -17.34062 -17.27526 -16.45454 -16.33957 -15.33228 -15.26292 -14.99323 -14.64912 -14.52396 -14.36547 -14.12025 -14.00327 -13.55853 -13.33098 -13.20379 -12.86242 -12.74855 -12.58745 -12.48156 -12.13942 -12.09092 -11.82161 -11.63442 -11.48708 -11.41986 -11.04716 -10.36484 -9.61248 -9.30662 -8.83218 -8.61290 -7.51523 -6.33999 0.54689 0.70345 1.04803 1.29321 1.38601 1.52615 1.55293 2.21824 2.67919 2.79756 3.05457 3.19886 3.78584 3.94846 4.03230 4.30436 4.46000 4.49723 4.58007 4.65679 4.68834 4.73862 4.83846 4.96555 5.05347 5.15310 5.16385 5.22147 5.26190 5.32171 5.41501 5.47161 5.53959 5.59291 5.73830 5.92493 5.98933 6.10000 6.14591 6.27172 6.53863 6.74668 6.89939 6.98963 7.03372 7.15851 7.17401 8.34444 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.003722 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.398086 B = 7520.540903 C = 7845.907551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.131 4.131 4 C -0.133 4.133 5 C 0.130 3.870 6 N -0.694 5.694 7 C 0.190 3.810 8 C -0.266 4.266 9 C -0.072 4.072 10 C -0.265 4.265 11 C 0.101 3.899 12 C -0.502 4.502 13 H 0.076 0.924 14 C 0.038 3.962 15 N -0.821 5.821 16 Si 0.980 3.020 17 H -0.258 1.258 18 H -0.266 1.266 19 H -0.265 1.265 20 C -0.227 4.227 21 C -0.135 4.135 22 C -0.168 4.168 23 C 0.179 3.821 24 N -0.871 5.871 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.401 0.599 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.286 0.714 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.403 0.597 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 -13.466 8.061 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.136 4.136 4 C -0.155 4.155 5 C 0.031 3.969 6 N -0.319 5.319 7 C 0.094 3.906 8 C -0.288 4.288 9 C -0.091 4.091 10 C -0.285 4.285 11 C 0.098 3.902 12 C -0.531 4.531 13 H 0.094 0.906 14 C -0.177 4.177 15 N -0.447 5.447 16 Si 0.801 3.199 17 H -0.181 1.181 18 H -0.191 1.191 19 H -0.189 1.189 20 C -0.250 4.250 21 C -0.157 4.157 22 C -0.191 4.191 23 C 0.075 3.925 24 N -0.414 5.414 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.147 0.853 31 H 0.237 0.763 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.149 0.851 39 H 0.232 0.768 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.840 -13.513 8.163 17.206 hybrid contribution 0.821 0.447 -0.650 1.138 sum -6.019 -13.067 7.514 16.230 Atomic orbital electron populations 1.21735 0.94406 1.02267 1.01713 1.20370 0.96263 0.90878 1.03303 1.19368 1.05679 0.97819 0.90773 1.20581 1.02445 0.93877 0.98592 1.17781 1.00231 0.93343 0.85529 1.41943 1.73394 1.03845 1.12717 1.17608 0.93145 0.82832 0.97001 1.20349 1.01466 0.94558 1.12383 1.20675 0.97622 0.93557 0.97209 1.21107 1.01979 0.98170 1.07224 1.17743 0.91464 0.91837 0.89116 1.19830 0.97367 1.05858 1.30045 0.90628 1.26741 0.99094 0.94020 0.97880 1.69928 1.17535 1.23774 1.33441 0.85198 0.77618 0.79233 0.77879 1.18122 1.19108 1.18939 1.20909 1.00463 0.94105 1.09477 1.20693 1.03237 0.99920 0.91886 1.20483 1.06425 0.94645 0.97543 1.17455 0.96439 0.91332 0.87311 1.42332 1.76800 1.17631 1.04667 0.92803 0.93748 0.90743 0.90645 0.90096 0.85294 0.76343 0.88038 0.86213 0.88538 0.90344 0.88190 0.88552 0.85123 0.76831 0.76608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.07 -1.24 5.49 29.85 0.16 -1.07 16 3 C -0.13 -3.31 5.15 -19.75 -0.10 -3.41 16 4 C -0.13 -3.99 9.58 22.38 0.21 -3.78 16 5 C 0.13 4.79 5.94 38.14 0.23 5.02 16 6 N -0.69 -28.51 5.44 -180.51 -0.98 -29.49 16 7 C 0.19 9.18 5.73 38.17 0.22 9.40 16 8 C -0.27 -12.31 8.03 22.60 0.18 -12.13 16 9 C -0.07 -3.32 10.01 22.20 0.22 -3.10 16 10 C -0.26 -13.55 9.79 22.76 0.22 -13.33 16 11 C 0.10 5.67 5.57 -21.31 -0.12 5.55 16 12 C -0.50 -27.85 9.04 23.46 0.21 -27.63 16 13 H 0.08 4.06 7.92 -2.91 -0.02 4.04 16 14 C 0.04 1.96 5.10 85.25 0.43 2.39 16 15 N -0.82 -44.17 11.06 21.82 0.24 -43.93 16 16 Si 0.98 39.04 29.60 68.60 2.03 41.07 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 C -0.23 -12.30 8.61 22.86 0.20 -12.10 16 21 C -0.14 -5.06 8.15 22.39 0.18 -4.88 16 22 C -0.17 -5.04 9.89 22.38 0.22 -4.82 16 23 C 0.18 4.51 6.74 38.15 0.26 4.77 16 24 N -0.87 -14.51 9.00 -51.23 -0.46 -14.97 16 25 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.25 8.05 -2.39 -0.02 1.23 16 29 H 0.08 1.13 6.81 -2.39 -0.02 1.11 16 30 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.40 15.09 8.92 -92.71 -0.83 14.26 16 32 H 0.10 4.43 7.00 -2.91 -0.02 4.41 16 33 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 36 H 0.10 5.67 6.23 -2.91 -0.02 5.65 16 37 H 0.10 4.17 6.71 -2.91 -0.02 4.15 16 38 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.40 5.37 8.84 -92.71 -0.82 4.55 16 40 H 0.40 5.09 6.93 -92.71 -0.64 4.45 16 Total: -1.00 -63.71 331.49 3.07 -60.64 By element: Atomic # 1 Polarization: 48.56 SS G_CDS: -1.21 Total: 47.35 kcal Atomic # 6 Polarization: -64.12 SS G_CDS: 3.45 Total: -60.68 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -1.20 Total: -88.39 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -63.71 3.07 -60.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216040310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.551 kcal (2) G-P(sol) polarization free energy of solvation -63.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds