Wall clock time and date at job start Tue Mar 31 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09000 * 109.46994 * 54.35523 * 3 2 1 5 5 C 1.50694 * 109.47280 * 174.35691 * 3 2 1 6 6 H 1.07996 * 120.00217 * 87.46519 * 5 3 2 7 7 C 1.37885 * 119.99740 * 267.46704 * 5 3 2 8 8 N 1.31515 * 119.99641 * 176.06105 * 7 5 3 9 9 Si 1.86799 * 120.00248 * 356.06392 * 7 5 3 10 10 H 1.48506 * 109.46805 * 275.08788 * 9 7 5 11 11 H 1.48502 * 109.46866 * 35.08588 * 9 7 5 12 12 H 1.48498 * 109.47315 * 155.08680 * 9 7 5 13 13 N 1.46502 * 109.46715 * 294.35778 * 3 2 1 14 14 C 1.34771 * 120.00112 * 85.00242 * 13 3 2 15 15 O 1.21564 * 120.00451 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99748 * 179.97438 * 14 13 3 17 17 C 1.37964 * 119.99931 * 179.97438 * 16 14 13 18 18 N 1.32014 * 126.65386 * 179.70772 * 17 16 14 19 19 C 1.34343 * 105.53016 * 179.91567 * 18 17 16 20 20 C 1.50700 * 126.22040 * 180.11274 * 19 18 17 21 21 C 1.52994 * 109.47197 * 120.26405 * 20 19 18 22 22 C 1.53002 * 109.46664 * 240.26271 * 20 19 18 23 23 N 1.29998 * 107.55887 * 0.35225 * 19 18 17 24 24 O 1.21279 * 110.46394 * 359.77700 * 23 19 18 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97008 * 119.99917 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99443 * 264.99645 * 13 3 2 32 32 H 0.96999 * 120.00381 * 359.97438 * 16 14 13 33 33 H 1.09000 * 109.46674 * 0.26153 * 20 19 18 34 34 H 1.09000 * 109.47248 * 299.99512 * 21 20 19 35 35 H 1.09002 * 109.47168 * 59.99857 * 21 20 19 36 36 H 1.09004 * 109.47078 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.46914 * 60.00383 * 22 20 19 38 38 H 1.09004 * 109.46581 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.47321 * 299.99910 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1397 6 1 4.1647 1.3737 -0.7387 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4619 1.5181 9 14 3.0407 1.7713 2.8984 10 1 2.7493 3.2162 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7501 1.2552 4.0965 13 7 1.6656 2.0927 -1.2583 14 6 0.4497 2.6591 -1.3885 15 8 -0.3368 2.6302 -0.4619 16 7 0.1055 3.2578 -2.5459 17 6 -1.1394 3.8371 -2.6794 18 7 -1.6091 4.4592 -3.7449 19 6 -2.8510 4.8507 -3.4145 20 6 -3.8117 5.6043 -4.2979 21 6 -5.0841 4.7768 -4.4900 22 6 -4.1664 6.9404 -3.6422 23 7 -3.0715 4.4659 -2.1925 24 8 -2.1043 3.8828 -1.7506 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8281 1.5269 2.3971 31 1 2.2930 2.1156 -1.9977 32 1 0.7331 3.2812 -3.2852 33 1 -3.3472 5.7870 -5.2669 34 1 -4.8315 3.8249 -4.9571 35 1 -5.5485 4.5941 -3.5209 36 1 -5.7788 5.3217 -5.1293 37 1 -3.2598 7.5300 -3.5054 38 1 -4.8609 7.4857 -4.2814 39 1 -4.6308 6.7578 -2.6732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219051993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:21 Heat of formation + Delta-G solvation = 32.645429 kcal Electronic energy + Delta-G solvation = -22398.132669 eV Core-core repulsion = 18958.340728 eV Total energy + Delta-G solvation = -3439.791941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.34377 -40.15507 -36.89129 -36.31215 -35.08629 -33.85263 -32.53686 -31.68302 -30.40088 -27.64488 -27.46936 -24.73100 -23.95178 -22.91263 -22.10476 -20.06586 -19.89312 -18.71174 -18.15694 -18.01735 -16.85493 -16.40691 -15.59970 -15.10484 -15.07543 -14.49147 -14.42850 -13.72540 -13.65328 -13.00485 -12.86599 -12.50719 -12.41812 -12.05953 -12.02245 -11.92277 -11.87364 -11.62532 -11.31424 -11.03714 -10.90553 -10.87586 -10.85707 -10.71135 -10.19308 -9.94969 -9.87821 -9.32991 -8.98447 -8.82038 -8.26613 -6.33530 -4.38619 1.30957 1.84370 2.24584 3.17644 3.23722 3.29732 3.36492 3.41812 3.78148 4.23121 4.24950 4.64132 4.79092 4.80086 4.93374 5.06882 5.33539 5.41350 5.53025 5.58690 5.71562 5.83854 5.92270 5.96658 6.00969 6.05891 6.12909 6.21588 6.42086 6.64301 6.74969 6.80452 6.91367 7.19615 7.21224 7.37011 7.98462 8.30394 8.44191 8.64122 8.73120 9.26840 10.77548 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033662 B = 0.003693 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.586554 B = 7580.161399 C = 7628.163096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.252 3.748 4 H 0.054 0.946 5 C -0.534 4.534 6 H 0.081 0.919 7 C 0.084 3.916 8 N -0.884 5.884 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.257 1.257 12 H -0.285 1.285 13 N -0.698 5.698 14 C 0.687 3.313 15 O -0.552 6.552 16 N -0.620 5.620 17 C 0.437 3.563 18 N -0.521 5.521 19 C 0.192 3.808 20 C -0.001 4.001 21 C -0.145 4.145 22 C -0.145 4.145 23 N -0.390 5.390 24 O 0.088 5.912 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.270 0.730 31 H 0.396 0.604 32 H 0.432 0.568 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 5.661 -11.755 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.151 3.849 4 H 0.072 0.928 5 C -0.572 4.572 6 H 0.099 0.901 7 C -0.121 4.121 8 N -0.520 5.520 9 Si 0.697 3.303 10 H -0.197 1.197 11 H -0.181 1.181 12 H -0.210 1.210 13 N -0.350 5.350 14 C 0.386 3.614 15 O -0.426 6.426 16 N -0.283 5.283 17 C 0.128 3.872 18 N -0.266 5.266 19 C -0.082 4.082 20 C -0.021 4.021 21 C -0.203 4.203 22 C -0.203 4.203 23 N -0.105 5.105 24 O 0.037 5.963 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.230 0.770 32 H 0.273 0.727 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.437 5.827 -10.588 19.605 hybrid contribution 0.585 0.001 0.165 0.608 sum -14.852 5.829 -10.423 19.057 Atomic orbital electron populations 1.21905 0.97295 0.99071 1.02021 1.22124 0.93739 0.99182 1.01599 1.19224 0.95666 0.88949 0.81095 0.92817 1.20957 0.88296 1.52792 0.95142 0.90097 1.24911 0.94905 0.93402 0.98908 1.69868 1.09643 1.47823 1.24618 0.86938 0.81326 0.79686 0.82329 1.19731 1.18083 1.21046 1.46015 1.12059 1.57403 1.19507 1.16243 0.84629 0.79219 0.81314 1.91037 1.50829 1.63030 1.37704 1.41882 1.10720 1.57035 1.18701 1.23830 0.87146 0.91998 0.84234 1.72202 1.09809 1.21003 1.23595 1.25411 0.91726 0.99781 0.91289 1.19517 0.92259 0.93718 0.96595 1.21847 0.95850 0.99849 1.02757 1.21852 1.02042 0.95043 1.01399 1.74593 1.07154 1.15413 1.13343 1.85654 1.17186 1.56062 1.37363 0.94896 0.92877 0.93466 0.92750 0.91674 0.92031 0.77023 0.72687 0.88122 0.92275 0.91764 0.91198 0.92245 0.91195 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.53 37.16 0.32 -2.46 16 2 C -0.13 -2.58 5.54 -26.73 -0.15 -2.73 16 3 C 0.25 5.52 1.82 -69.08 -0.13 5.40 16 4 H 0.05 1.30 4.92 -51.93 -0.26 1.04 16 5 C -0.53 -13.39 9.05 -34.44 -0.31 -13.70 16 6 H 0.08 2.13 8.06 -52.49 -0.42 1.70 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 8 N -0.88 -24.98 13.96 55.43 0.77 -24.21 16 9 Si 0.87 20.61 26.69 -169.99 -4.54 16.07 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.26 -5.93 6.88 56.52 0.39 -5.54 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.70 -12.49 5.03 -59.82 -0.30 -12.79 16 14 C 0.69 12.21 7.12 -86.92 -0.62 11.59 16 15 O -0.55 -11.80 12.28 -16.30 -0.20 -12.00 16 16 N -0.62 -8.77 5.37 -17.65 -0.09 -8.86 16 17 C 0.44 6.91 8.99 -87.11 -0.78 6.13 16 18 N -0.52 -7.64 11.59 -12.96 -0.15 -7.80 16 19 C 0.19 2.69 6.71 -156.47 -1.05 1.64 16 20 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 21 C -0.14 -1.23 9.17 37.15 0.34 -0.89 16 22 C -0.15 -1.25 9.18 37.16 0.34 -0.91 16 23 N -0.39 -6.34 12.15 31.12 0.38 -5.97 16 24 O 0.09 1.58 9.69 -4.45 -0.04 1.54 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 27 H 0.05 0.90 5.63 -51.93 -0.29 0.61 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.37 7.90 -51.93 -0.41 0.96 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.40 5.92 8.61 -40.82 -0.35 5.57 16 32 H 0.43 4.46 8.83 -40.82 -0.36 4.10 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -30.64 326.24 -7.16 -37.80 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.45 Total: 5.41 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.45 Total: 5.89 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.61 Total: -59.62 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.24 Total: -10.47 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.54 Total: 16.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.64 -7.16 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219051993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.445 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds