Wall clock time and date at job start Tue Mar 31 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21593 * 119.99949 * 0.28071 * 6 5 3 8 8 N 1.34777 * 120.00128 * 180.27942 * 6 5 3 9 9 C 1.46499 * 120.00065 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47198 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99761 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99724 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00074 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99758 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47345 * 59.99929 * 15 13 11 17 17 H 1.48502 * 109.47317 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47320 * 300.00374 * 15 13 11 19 19 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 20 20 N 1.29946 * 126.28281 * 285.02634 * 19 3 2 21 21 O 1.21302 * 110.24777 * 179.97438 * 20 19 3 22 22 C 1.33645 * 109.81394 * 359.97438 * 21 20 19 23 23 C 1.50693 * 126.55523 * 179.97438 * 22 21 20 24 24 N 1.31128 * 106.89330 * 359.77334 * 22 21 20 25 25 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 26 26 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 27 27 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 29 29 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 30 30 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 31 31 H 0.97000 * 119.99549 * 359.97438 * 8 6 5 32 32 H 1.09000 * 109.47602 * 299.99940 * 9 8 6 33 33 H 1.09006 * 109.46868 * 59.99976 * 9 8 6 34 34 H 1.09000 * 109.47211 * 300.00689 * 10 9 8 35 35 H 1.09007 * 109.46376 * 60.00147 * 10 9 8 36 36 H 0.96999 * 119.99800 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.47329 * 359.97438 * 23 22 21 38 38 H 1.09000 * 109.47173 * 119.97668 * 23 22 21 39 39 H 1.09003 * 109.47415 * 239.98164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3392 2.6370 0.4299 8 7 0.0829 3.2767 2.5147 9 6 -1.2382 3.8978 2.6379 10 6 -1.3854 4.5112 4.0319 11 6 -2.7442 5.1506 4.1584 12 1 -3.4339 5.1220 3.3278 13 6 -3.1067 5.7721 5.3346 14 7 -2.2665 5.8074 6.3457 15 14 -4.7911 6.5641 5.4917 16 1 -5.8427 5.5349 5.2908 17 1 -4.9335 7.1606 6.8441 18 1 -4.9362 7.6268 4.4647 19 6 3.5420 1.4443 -0.1238 20 7 4.3912 1.1443 0.8129 21 8 5.5266 1.2415 0.3971 22 6 5.5089 1.6237 -0.8834 23 6 6.7071 1.8592 -1.7664 24 7 4.2495 1.7504 -1.2259 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2720 2.1232 1.9978 31 1 0.7023 3.3020 3.2608 32 1 -1.3447 4.6780 1.8842 33 1 -2.0100 3.1423 2.4904 34 1 -1.2790 3.7307 4.7854 35 1 -0.6135 5.2666 4.1797 36 1 -2.5217 6.2444 7.1733 37 1 7.6189 1.6696 -1.1998 38 1 6.6651 1.1864 -2.6229 39 1 6.7043 2.8920 -2.1150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223166920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:17 Heat of formation + Delta-G solvation = 24.881062 kcal Electronic energy + Delta-G solvation = -21686.307572 eV Core-core repulsion = 18246.178943 eV Total energy + Delta-G solvation = -3440.128629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.92727 -39.94391 -37.06411 -35.59545 -34.65180 -33.41008 -32.97513 -32.07661 -29.53737 -29.20413 -27.39623 -24.61981 -23.97270 -22.60596 -21.53390 -20.76373 -20.31288 -18.52956 -18.43213 -17.39532 -16.57859 -16.22658 -15.57348 -15.03850 -14.78513 -14.46751 -14.33521 -13.94410 -13.88893 -13.63387 -13.39279 -12.99237 -12.80440 -12.45057 -12.26504 -12.05961 -11.59899 -11.47570 -11.35902 -11.18534 -11.02137 -10.87758 -10.63886 -10.30590 -10.22599 -9.92113 -9.55052 -9.26680 -9.08202 -8.48478 -8.27214 -6.07827 -4.10622 0.81532 1.83070 2.48105 2.81210 3.31672 3.32514 3.36207 3.39955 3.55549 3.73949 4.40008 4.53583 4.63344 4.75855 4.81112 4.86854 5.01894 5.11290 5.29184 5.34763 5.41037 5.55812 5.64604 5.78904 5.96776 6.14569 6.28926 6.40308 6.45294 6.53657 6.78150 6.99028 7.17547 7.57273 7.64427 7.84178 7.91105 8.25695 8.39279 8.91666 8.97069 9.54021 11.03843 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002903 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.342339 B = 9644.470144 C =10163.798283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.259 3.741 4 H 0.119 0.881 5 N -0.747 5.747 6 C 0.703 3.297 7 O -0.588 6.588 8 N -0.736 5.736 9 C 0.141 3.859 10 C 0.013 3.987 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.169 3.831 20 N -0.374 5.374 21 O 0.080 5.920 22 C 0.177 3.823 23 C -0.061 4.061 24 N -0.474 5.474 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.398 0.602 31 H 0.393 0.607 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.092 -10.916 -14.180 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.151 3.849 4 H 0.137 0.863 5 N -0.405 5.405 6 C 0.403 3.597 7 O -0.466 6.466 8 N -0.390 5.390 9 C 0.018 3.982 10 C -0.025 4.025 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.105 4.105 20 N -0.081 5.081 21 O 0.020 5.980 22 C -0.043 4.043 23 C -0.119 4.119 24 N -0.209 5.209 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.232 0.768 31 H 0.226 0.774 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.750 -10.996 -14.318 25.318 hybrid contribution -0.020 0.512 0.909 1.044 sum 17.730 -10.485 -13.408 24.578 Atomic orbital electron populations 1.21770 0.93198 1.00813 1.04098 1.21953 0.98282 0.93975 1.02370 1.18899 0.81219 0.95387 0.89350 0.86329 1.45092 1.17323 1.62118 1.15959 1.15904 0.81368 0.78353 0.84050 1.90910 1.51535 1.65238 1.38906 1.45551 1.20005 1.59463 1.13959 1.21614 0.79982 0.95794 1.00788 1.19325 0.97831 0.95951 0.89358 1.21011 0.99906 1.35770 0.99293 0.92246 1.24997 0.97469 0.96110 0.95730 1.69948 1.35586 1.43934 1.03904 0.86564 0.84129 0.79664 0.77125 1.20089 1.21271 1.20107 1.25944 0.99881 0.99342 0.85325 1.74601 0.89855 1.20705 1.22933 1.85310 1.24411 1.62164 1.26146 1.28897 0.96085 0.94757 0.84569 1.20406 0.89722 1.05184 0.96620 1.71872 1.01308 1.20745 1.26931 0.91550 0.91715 0.93311 0.91151 0.91467 0.76834 0.77356 0.92690 0.92651 0.95963 0.96011 0.92803 0.88413 0.87767 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.52 37.16 0.32 -1.60 16 2 C -0.13 -1.51 5.59 -26.73 -0.15 -1.66 16 3 C 0.26 3.42 2.80 -69.08 -0.19 3.23 16 4 H 0.12 1.73 7.57 -51.93 -0.39 1.34 16 5 N -0.75 -10.56 5.02 -59.81 -0.30 -10.86 16 6 C 0.70 12.37 7.14 -86.92 -0.62 11.75 16 7 O -0.59 -11.99 13.49 5.28 0.07 -11.92 16 8 N -0.74 -13.29 5.56 -65.22 -0.36 -13.65 16 9 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 15 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.17 2.10 7.01 -156.37 -1.10 1.01 16 20 N -0.37 -4.52 11.86 30.90 0.37 -4.15 16 21 O 0.08 0.79 11.31 18.10 0.20 1.00 16 22 C 0.18 1.48 8.51 -13.06 -0.11 1.37 16 23 C -0.06 -0.17 10.51 36.00 0.38 0.21 16 24 N -0.47 -5.46 11.55 -9.87 -0.11 -5.57 16 25 H 0.07 1.07 5.66 -51.93 -0.29 0.78 16 26 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.40 5.05 8.37 -40.82 -0.34 4.71 16 31 H 0.39 6.28 8.49 -40.82 -0.35 5.93 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -33.27 333.70 -6.99 -40.26 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.55 Total: 4.81 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.05 Total: 4.17 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.33 Total: -59.89 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.28 Total: -10.92 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.27 -6.99 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223166920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds