Wall clock time and date at job start Tue Mar 31 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 6 6 C 1.34777 * 120.00075 * 84.99755 * 5 3 2 7 7 O 1.21587 * 119.99681 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00044 * 179.97438 * 6 5 3 9 9 C 1.46500 * 119.99839 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46984 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.47160 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99471 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00181 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99970 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00184 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46869 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47383 * 120.00187 * 15 13 11 18 18 H 1.48500 * 109.47270 * 240.00202 * 15 13 11 19 19 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 20 20 N 1.29946 * 126.28438 * 74.69208 * 19 3 2 21 21 O 1.21307 * 110.25002 * 179.84540 * 20 19 3 22 22 C 1.33637 * 109.80780 * 0.41738 * 21 20 19 23 23 C 1.50706 * 126.55223 * 179.72141 * 22 21 20 24 24 N 1.31135 * 106.90253 * 359.74538 * 22 21 20 25 25 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 27 27 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 28 28 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 29 29 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 30 30 H 0.96997 * 120.00274 * 264.99726 * 5 3 2 31 31 H 0.96997 * 120.00305 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47120 * 300.00352 * 9 8 6 33 33 H 1.09002 * 109.47331 * 59.99749 * 9 8 6 34 34 H 1.08997 * 109.47026 * 299.99528 * 10 9 8 35 35 H 1.08996 * 109.47259 * 60.00290 * 10 9 8 36 36 H 0.97001 * 120.00359 * 179.97438 * 14 13 11 37 37 H 1.09005 * 109.47032 * 270.02897 * 23 22 21 38 38 H 1.08998 * 109.46697 * 30.02135 * 23 22 21 39 39 H 1.08995 * 109.47475 * 150.02723 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3411 2.6326 -0.4319 8 7 0.0789 3.2673 -2.5185 9 6 -1.2441 3.8840 -2.6436 10 6 -1.3931 4.4928 -4.0393 11 6 -2.7543 5.1267 -4.1682 12 1 -3.4438 5.0985 -3.3374 13 6 -3.1189 5.7434 -5.3461 14 7 -2.2789 5.7782 -6.3575 15 14 -4.8057 6.5297 -5.5056 16 1 -5.5550 6.3557 -4.2354 17 1 -4.6515 7.9782 -5.7943 18 1 -5.5516 5.8809 -6.6137 19 6 3.5419 1.4442 0.1239 20 7 4.3910 1.1393 -0.8113 21 8 5.5266 1.2414 -0.3969 22 6 5.5088 1.6243 0.8833 23 6 6.7070 1.8591 1.7666 24 7 4.2494 1.7560 1.2244 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 2.2720 2.1231 -1.9978 31 1 0.6984 3.2930 -3.2645 32 1 -2.0136 3.1267 -2.4938 33 1 -1.3529 4.6661 -1.8921 34 1 -0.6236 5.2500 -4.1894 35 1 -1.2845 3.7104 -4.7904 36 1 -2.5355 6.2117 -7.1864 37 1 6.9724 0.9312 2.2732 38 1 7.5470 2.1938 1.1579 39 1 6.4684 2.6221 2.5074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223166921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:22 Heat of formation + Delta-G solvation = 24.987642 kcal Electronic energy + Delta-G solvation = -21687.089406 eV Core-core repulsion = 18246.965398 eV Total energy + Delta-G solvation = -3440.124008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.92780 -39.94684 -37.06443 -35.59613 -34.65322 -33.40889 -32.97693 -32.07698 -29.53781 -29.20544 -27.39691 -24.62299 -23.97363 -22.60732 -21.53457 -20.76493 -20.31175 -18.53497 -18.43056 -17.40029 -16.57901 -16.23190 -15.57705 -15.04180 -14.78219 -14.45914 -14.33635 -13.94505 -13.88760 -13.62333 -13.39214 -12.99304 -12.80796 -12.44290 -12.27795 -12.06738 -11.60284 -11.47835 -11.35820 -11.17167 -11.05220 -10.88132 -10.60604 -10.32162 -10.23025 -9.91470 -9.55728 -9.23857 -9.07982 -8.49334 -8.27443 -6.08292 -4.10883 0.81312 1.83055 2.47960 2.81293 3.29371 3.31672 3.37046 3.42462 3.55562 3.74416 4.39912 4.53500 4.63310 4.76372 4.79170 4.86875 5.02173 5.11263 5.28944 5.34687 5.41629 5.55803 5.64802 5.78945 5.96813 6.14594 6.28895 6.40244 6.45261 6.53726 6.78123 6.98973 7.17542 7.57512 7.64254 7.84028 7.90981 8.25532 8.39225 8.91786 8.97201 9.53914 11.03461 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.002901 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.433420 B = 9649.458589 C =10166.438826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.259 3.741 4 H 0.119 0.881 5 N -0.747 5.747 6 C 0.703 3.297 7 O -0.588 6.588 8 N -0.737 5.737 9 C 0.141 3.859 10 C 0.012 3.988 11 C -0.519 4.519 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.169 3.831 20 N -0.374 5.374 21 O 0.080 5.920 22 C 0.177 3.823 23 C -0.062 4.062 24 N -0.474 5.474 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.398 0.602 31 H 0.393 0.607 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.122 -10.866 14.239 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.152 3.848 4 H 0.137 0.863 5 N -0.405 5.405 6 C 0.403 3.597 7 O -0.466 6.466 8 N -0.390 5.390 9 C 0.018 3.982 10 C -0.026 4.026 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.105 4.105 20 N -0.081 5.081 21 O 0.020 5.980 22 C -0.043 4.043 23 C -0.120 4.120 24 N -0.208 5.208 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.232 0.768 31 H 0.226 0.774 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.776 -10.947 14.388 25.354 hybrid contribution -0.008 0.504 -0.939 1.066 sum 17.768 -10.443 13.449 24.610 Atomic orbital electron populations 1.21771 0.93195 1.00815 1.04110 1.21953 0.98286 0.93981 1.02371 1.18898 0.81220 0.95378 0.89352 0.86327 1.45093 1.17164 1.62290 1.15951 1.15899 0.81358 0.78357 0.84052 1.90909 1.51613 1.65126 1.38934 1.45551 1.19851 1.59740 1.13839 1.21610 0.79921 0.95868 1.00770 1.19336 0.97861 0.96006 0.89347 1.21087 0.99733 1.35804 0.99180 0.92141 1.25002 0.97491 0.96122 0.95754 1.69968 1.35471 1.44124 1.03800 0.86454 0.83963 0.78951 0.78189 1.19553 1.20959 1.20946 1.25939 0.99878 0.99238 0.85458 1.74607 0.89838 1.20639 1.22987 1.85303 1.24392 1.62216 1.26125 1.28897 0.96092 0.94772 0.84563 1.20414 0.89809 1.05042 0.96722 1.71896 1.01293 1.20700 1.26925 0.93317 0.91711 0.91541 0.91466 0.91153 0.76841 0.77357 0.92646 0.92692 0.95997 0.95949 0.92921 0.87959 0.88310 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.51 37.15 0.32 -1.60 16 2 C -0.13 -1.51 5.59 -26.74 -0.15 -1.66 16 3 C 0.26 3.42 2.80 -69.08 -0.19 3.23 16 4 H 0.12 1.73 7.58 -51.93 -0.39 1.34 16 5 N -0.75 -10.56 5.03 -59.81 -0.30 -10.86 16 6 C 0.70 12.36 7.13 -86.92 -0.62 11.74 16 7 O -0.59 -11.98 13.48 5.29 0.07 -11.91 16 8 N -0.74 -13.28 5.56 -65.23 -0.36 -13.64 16 9 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 15 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.17 2.10 7.01 -156.37 -1.10 1.00 16 20 N -0.37 -4.51 11.87 30.90 0.37 -4.14 16 21 O 0.08 0.79 11.31 18.12 0.20 1.00 16 22 C 0.18 1.48 8.51 -13.05 -0.11 1.37 16 23 C -0.06 -0.17 10.51 36.01 0.38 0.20 16 24 N -0.47 -5.45 11.55 -9.87 -0.11 -5.57 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 27 H 0.07 1.07 5.65 -51.92 -0.29 0.78 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.40 5.05 8.38 -40.82 -0.34 4.71 16 31 H 0.39 6.27 8.49 -40.82 -0.35 5.93 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 38 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -33.30 333.67 -6.99 -40.29 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.55 Total: 4.74 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.05 Total: 4.17 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.33 Total: -59.84 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.28 Total: -10.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.30 -6.99 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223166921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.279 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds