Wall clock time and date at job start Tue Mar 31 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 6 6 C 1.34777 * 120.00075 * 84.99755 * 5 3 2 7 7 O 1.21587 * 119.99681 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00044 * 179.97438 * 6 5 3 9 9 C 1.46500 * 119.99839 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46984 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.47160 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99471 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00181 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99970 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00184 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46869 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47383 * 120.00187 * 15 13 11 18 18 H 1.48500 * 109.47270 * 240.00202 * 15 13 11 19 19 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 20 20 N 1.29946 * 126.28438 * 74.69208 * 19 3 2 21 21 O 1.21307 * 110.25002 * 179.84540 * 20 19 3 22 22 C 1.33637 * 109.80780 * 0.41738 * 21 20 19 23 23 C 1.50706 * 126.55223 * 179.72141 * 22 21 20 24 24 N 1.31135 * 106.90253 * 359.74538 * 22 21 20 25 25 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 27 27 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 28 28 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 29 29 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 30 30 H 0.96997 * 120.00274 * 264.99726 * 5 3 2 31 31 H 0.96997 * 120.00305 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47120 * 300.00352 * 9 8 6 33 33 H 1.09002 * 109.47331 * 59.99749 * 9 8 6 34 34 H 1.08997 * 109.47026 * 299.99528 * 10 9 8 35 35 H 1.08996 * 109.47259 * 60.00290 * 10 9 8 36 36 H 0.97001 * 120.00359 * 179.97438 * 14 13 11 37 37 H 1.09005 * 109.47032 * 270.02897 * 23 22 21 38 38 H 1.08998 * 109.46697 * 30.02135 * 23 22 21 39 39 H 1.08995 * 109.47475 * 150.02723 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3411 2.6326 -0.4319 8 7 0.0789 3.2673 -2.5185 9 6 -1.2441 3.8840 -2.6436 10 6 -1.3931 4.4928 -4.0393 11 6 -2.7543 5.1267 -4.1682 12 1 -3.4438 5.0985 -3.3374 13 6 -3.1189 5.7434 -5.3461 14 7 -2.2789 5.7782 -6.3575 15 14 -4.8057 6.5297 -5.5056 16 1 -5.5550 6.3557 -4.2354 17 1 -4.6515 7.9782 -5.7943 18 1 -5.5516 5.8809 -6.6137 19 6 3.5419 1.4442 0.1239 20 7 4.3910 1.1393 -0.8113 21 8 5.5266 1.2414 -0.3969 22 6 5.5088 1.6243 0.8833 23 6 6.7070 1.8591 1.7666 24 7 4.2494 1.7560 1.2244 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 2.2720 2.1231 -1.9978 31 1 0.6984 3.2930 -3.2645 32 1 -2.0136 3.1267 -2.4938 33 1 -1.3529 4.6661 -1.8921 34 1 -0.6236 5.2500 -4.1894 35 1 -1.2845 3.7104 -4.7904 36 1 -2.5355 6.2117 -7.1864 37 1 6.9724 0.9312 2.2732 38 1 7.5470 2.1938 1.1579 39 1 6.4684 2.6221 2.5074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223166921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:21 Heat of formation + Delta-G solvation = -0.989292 kcal Electronic energy + Delta-G solvation = -21688.215850 eV Core-core repulsion = 18246.965398 eV Total energy + Delta-G solvation = -3441.250452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.74416 -41.33093 -38.19254 -36.70929 -36.14899 -34.88643 -34.18379 -33.41809 -31.29076 -29.76870 -28.56346 -26.55736 -24.82650 -23.48813 -23.16957 -22.30562 -21.46748 -19.80753 -19.26598 -18.50958 -18.31389 -17.64535 -16.98219 -16.50962 -16.05423 -15.76087 -15.47411 -15.44063 -14.96490 -14.40458 -14.27552 -14.16801 -14.11164 -13.86888 -13.21456 -13.07520 -12.98620 -12.94288 -12.62106 -12.51193 -12.43337 -12.26100 -12.19331 -11.94489 -11.66051 -11.49156 -11.21547 -10.97030 -10.61511 -10.38673 -9.86242 -8.24628 -6.34920 0.07665 0.96443 1.41017 1.41668 1.54584 1.61327 1.87289 2.08228 2.39738 2.45733 2.92557 3.10366 3.29441 3.71176 3.82641 4.04973 4.29732 4.41621 4.46496 4.51886 4.52300 4.61665 4.67715 4.75710 4.86147 4.92182 4.95158 5.04026 5.14957 5.26013 5.30172 5.41494 5.50790 5.58473 5.76575 5.89779 6.16103 6.78682 6.97810 7.07366 7.34493 7.50627 8.87678 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.002901 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.433420 B = 9649.458589 C =10166.438826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.260 3.740 4 H 0.102 0.898 5 N -0.732 5.732 6 C 0.706 3.294 7 O -0.616 6.616 8 N -0.733 5.733 9 C 0.163 3.837 10 C 0.023 3.977 11 C -0.544 4.544 12 H 0.060 0.940 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.966 3.034 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.157 3.843 20 N -0.388 5.388 21 O 0.082 5.918 22 C 0.194 3.806 23 C -0.062 4.062 24 N -0.505 5.505 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.407 0.593 31 H 0.404 0.596 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.336 -11.280 15.034 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.153 3.847 4 H 0.120 0.880 5 N -0.390 5.390 6 C 0.406 3.594 7 O -0.496 6.496 8 N -0.388 5.388 9 C 0.039 3.961 10 C -0.015 4.015 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.791 3.209 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.117 4.117 20 N -0.096 5.096 21 O 0.021 5.979 22 C -0.025 4.025 23 C -0.119 4.119 24 N -0.240 5.240 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.242 0.758 31 H 0.239 0.761 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.040 -11.379 15.192 26.885 hybrid contribution -0.241 0.608 -1.130 1.305 sum 18.799 -10.771 14.063 25.830 Atomic orbital electron populations 1.21682 0.94331 1.01317 1.01997 1.21882 0.97022 0.93317 1.03445 1.18863 0.82232 0.95685 0.87923 0.88008 1.44922 1.15954 1.61295 1.16780 1.15884 0.82023 0.78183 0.83275 1.90892 1.52757 1.66146 1.39804 1.45258 1.18942 1.59885 1.14696 1.21093 0.81497 0.95271 0.98277 1.19137 0.96458 0.95046 0.90824 1.21490 1.00936 1.36312 0.99483 0.92152 1.25889 1.01517 0.96556 0.95344 1.70070 1.37462 1.44869 1.04373 0.85376 0.79081 0.78057 0.78412 1.18866 1.20250 1.20215 1.25710 0.99396 1.00339 0.86228 1.74585 0.90408 1.21171 1.23388 1.85274 1.23419 1.62260 1.26961 1.29934 0.96617 0.91974 0.84011 1.20819 0.88216 1.06512 0.96386 1.71897 1.02640 1.22384 1.27037 0.91490 0.93018 0.94344 0.90942 0.89371 0.75798 0.76068 0.93429 0.93620 0.97505 0.97383 0.92562 0.85551 0.85794 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.51 71.98 0.61 -3.05 16 2 C -0.12 -2.72 5.59 30.59 0.17 -2.55 16 3 C 0.26 6.83 2.80 44.24 0.12 6.96 16 4 H 0.10 3.04 7.58 -2.39 -0.02 3.02 16 5 N -0.73 -20.67 5.03 -461.41 -2.32 -22.99 16 6 C 0.71 25.12 7.13 179.06 1.28 26.39 16 7 O -0.62 -25.62 13.48 -3.99 -0.05 -25.67 16 8 N -0.73 -26.77 5.56 -478.54 -2.66 -29.44 16 9 C 0.16 7.16 5.61 86.38 0.48 7.65 16 10 C 0.02 1.17 5.09 29.85 0.15 1.33 16 11 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.01 0.31 5.46 84.65 0.46 0.77 16 14 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 15 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.16 3.79 7.01 138.46 0.97 4.76 16 20 N -0.39 -8.94 11.87 -60.31 -0.72 -9.65 16 21 O 0.08 1.48 11.31 74.88 0.85 2.33 16 22 C 0.19 2.83 8.51 88.38 0.75 3.58 16 23 C -0.06 -0.15 10.51 71.24 0.75 0.60 16 24 N -0.51 -11.06 11.55 -303.18 -3.50 -14.56 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.51 7.84 -2.39 -0.02 1.49 16 27 H 0.04 1.24 5.65 -2.38 -0.01 1.23 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.41 10.16 8.38 -92.71 -0.78 9.38 16 31 H 0.40 12.97 8.49 -92.71 -0.79 12.18 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.13 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -72.13 333.67 -0.59 -72.71 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.48 Total: 19.97 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 5.99 Total: 15.96 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -8.91 Total: -131.39 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.79 Total: -23.34 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.13 -0.59 -72.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223166921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.722 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds