Wall clock time and date at job start Tue Mar 31 2020 07:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47475 * 2 1 4 4 H 1.09005 * 110.10525 * 306.62395 * 3 2 1 5 5 O 1.45501 * 110.18192 * 68.28458 * 3 2 1 6 6 C 1.34594 * 107.67792 * 118.94391 * 5 3 2 7 7 O 1.21514 * 125.04734 * 180.21564 * 6 5 3 8 8 C 1.46957 * 109.89996 * 0.39140 * 6 5 3 9 9 O 1.36001 * 125.30502 * 179.86216 * 8 6 5 10 10 C 1.42901 * 116.99613 * 294.05841 * 9 8 6 11 11 C 1.52998 * 109.46613 * 185.11845 * 10 9 8 12 12 C 1.53002 * 109.46971 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.47387 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47053 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46791 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00028 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99966 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00432 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00292 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46907 * 89.99583 * 19 17 15 21 21 H 1.48495 * 109.47437 * 210.00083 * 19 17 15 22 22 H 1.48500 * 109.46843 * 330.00158 * 19 17 15 23 23 C 1.33394 * 109.38909 * 359.59738 * 8 6 5 24 24 C 1.50700 * 126.54219 * 180.26390 * 23 8 6 25 25 H 1.09004 * 109.46751 * 300.00071 * 1 2 3 26 26 H 1.09003 * 109.46892 * 59.99492 * 1 2 3 27 27 H 1.08993 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46751 * 239.99929 * 2 1 3 29 29 H 1.08995 * 109.47143 * 120.00750 * 2 1 3 30 30 H 1.08997 * 109.47310 * 305.11367 * 10 9 8 31 31 H 1.09001 * 109.47582 * 65.11794 * 10 9 8 32 32 H 1.09001 * 109.47381 * 299.99698 * 11 10 9 33 33 H 1.08997 * 109.47734 * 60.00205 * 11 10 9 34 34 H 1.09002 * 109.47528 * 299.99855 * 12 11 10 35 35 H 1.09001 * 109.47418 * 59.99831 * 12 11 10 36 36 H 1.08997 * 109.46729 * 299.99915 * 13 12 11 37 37 H 1.09001 * 109.46935 * 59.99590 * 13 12 11 38 38 H 1.08997 * 109.47310 * 299.99592 * 14 13 12 39 39 H 1.08995 * 109.47165 * 60.00204 * 14 13 12 40 40 H 0.96998 * 120.00511 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46894 * 4.85897 * 24 23 8 42 42 H 1.08998 * 109.47112 * 124.85787 * 24 23 8 43 43 H 1.08997 * 109.47438 * 244.86612 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5893 1.9992 -0.8215 5 8 1.7310 2.0841 1.2688 6 6 2.8960 2.4396 1.8415 7 8 3.0040 2.9973 2.9156 8 6 4.0178 2.0567 0.9727 9 8 5.3326 2.2707 1.2466 10 6 5.7719 3.6296 1.2973 11 6 7.2894 3.6682 1.4884 12 6 7.7596 5.1231 1.5433 13 6 9.2772 5.1617 1.7350 14 6 9.7474 6.6166 1.7893 15 6 11.2420 6.6547 1.9788 16 1 11.8006 5.7333 2.0526 17 6 11.8964 7.8657 2.0568 18 7 13.2007 7.8990 2.2227 19 14 10.9304 9.4594 1.9284 20 1 10.4987 9.8871 3.2834 21 1 11.7888 10.5115 1.3272 22 1 9.7357 9.2464 1.0726 23 6 3.5457 1.4614 -0.1237 24 6 4.3590 0.9118 -1.2672 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.5102 4.1311 0.3656 31 1 5.2876 4.1372 2.1316 32 1 7.5512 3.1667 2.4201 33 1 7.7737 3.1607 0.6542 34 1 7.4979 5.6250 0.6119 35 1 7.2754 5.6302 2.3778 36 1 9.5385 4.6600 2.6667 37 1 9.7618 4.6545 0.9008 38 1 9.4861 7.1180 0.8575 39 1 9.2628 7.1242 2.6233 40 1 13.6610 8.7510 2.2779 41 1 5.4199 0.9942 -1.0310 42 1 4.1022 -0.1356 -1.4252 43 1 4.1432 1.4794 -2.1723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224368950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:31 Heat of formation + Delta-G solvation = -128.653142 kcal Electronic energy + Delta-G solvation = -21481.995272 eV Core-core repulsion = 18106.456492 eV Total energy + Delta-G solvation = -3375.538780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.02686 -38.79280 -38.01179 -35.64595 -34.71608 -33.43677 -32.69405 -30.78559 -28.68544 -27.31954 -26.67654 -23.59461 -23.15901 -21.33797 -21.13620 -20.78231 -20.02059 -18.17712 -17.03080 -16.73817 -16.55941 -16.33161 -15.35016 -15.33892 -15.02078 -14.42145 -14.20733 -14.11353 -13.84898 -13.64058 -13.43274 -12.90400 -12.86613 -12.55182 -12.33515 -12.28593 -12.08242 -11.85745 -11.61342 -11.47928 -11.36754 -11.24732 -10.92314 -10.71525 -10.49777 -9.99066 -9.88008 -9.67872 -9.52509 -9.26172 -9.13337 -8.50881 -6.01454 -3.99105 0.36300 2.21368 2.50208 3.06812 3.32952 3.39896 3.43866 3.45695 3.72498 4.10180 4.28674 4.47859 4.64629 4.71082 4.76847 4.93530 4.95925 5.00393 5.05336 5.13718 5.30953 5.32690 5.33955 5.42030 5.48044 5.50733 5.58893 5.68804 5.70224 5.90157 6.12692 6.16276 6.23500 6.35708 6.64532 6.74114 6.82580 6.96251 7.22371 7.35289 7.47966 7.83274 8.57670 9.03905 9.61378 11.12092 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038122 B = 0.002404 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.305721 B =11644.395082 C =11943.060823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.103 3.897 4 H 0.130 0.870 5 O -0.312 6.312 6 C 0.480 3.520 7 O -0.443 6.443 8 C -0.016 4.016 9 O -0.297 6.297 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.118 4.118 13 C -0.101 4.101 14 C -0.016 4.016 15 C -0.520 4.520 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.120 4.120 24 C -0.097 4.097 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.014 0.986 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.412 -17.287 -9.791 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C 0.048 3.952 4 H 0.147 0.853 5 O -0.229 6.229 6 C 0.322 3.678 7 O -0.327 6.327 8 C -0.063 4.063 9 O -0.213 6.213 10 C -0.014 4.014 11 C -0.152 4.152 12 C -0.156 4.156 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.558 4.558 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.121 4.121 24 C -0.153 4.153 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.290 -16.989 -9.136 32.607 hybrid contribution -0.387 1.122 0.033 1.188 sum -26.677 -15.867 -9.103 32.346 Atomic orbital electron populations 1.21782 0.94116 1.02480 1.02774 1.21815 0.97647 0.92579 1.04223 1.22514 0.91678 0.96185 0.84836 0.85291 1.87490 1.30744 1.70586 1.34037 1.21674 0.83486 0.77056 0.85613 1.90933 1.85104 1.37258 1.19444 1.20779 0.86338 1.04851 0.94294 1.86107 1.17270 1.28507 1.89384 1.23103 0.97020 0.80005 1.01295 1.21607 0.91123 0.99055 1.03439 1.21629 0.98592 0.93643 1.01724 1.21439 0.91585 0.99738 1.01103 1.19592 0.97104 0.92410 0.96204 1.21182 0.90724 0.94317 1.49530 0.91071 1.25058 0.94778 0.99199 0.94659 1.69922 1.07826 1.25986 1.50701 0.86757 0.80310 0.83378 0.78708 1.20315 1.21440 1.19053 1.23453 0.95340 0.98797 0.94553 1.20473 0.99818 1.01025 0.93997 0.91768 0.92211 0.91908 0.89064 0.90487 0.92585 0.91816 0.90814 0.90994 0.92294 0.92145 0.92677 0.92719 0.96721 0.97105 0.92802 0.89597 0.89906 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.84 37.16 0.37 -0.27 16 2 C -0.13 -0.55 5.66 -26.74 -0.15 -0.70 16 3 C 0.10 0.64 3.63 -27.70 -0.10 0.54 16 4 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 5 O -0.31 -3.24 10.65 -39.84 -0.42 -3.67 16 6 C 0.48 6.26 8.54 34.26 0.29 6.55 16 7 O -0.44 -7.39 17.83 -19.77 -0.35 -7.74 16 8 C -0.02 -0.18 6.32 -37.75 -0.24 -0.42 16 9 O -0.30 -3.86 9.88 -19.75 -0.20 -4.06 16 10 C 0.06 0.76 6.03 37.16 0.22 0.99 16 11 C -0.11 -1.56 5.58 -26.73 -0.15 -1.71 16 12 C -0.12 -1.87 5.21 -26.73 -0.14 -2.01 16 13 C -0.10 -2.01 5.15 -26.73 -0.14 -2.14 16 14 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 15 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 19 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 23 C -0.12 -0.89 5.76 -100.86 -0.58 -1.47 16 24 C -0.10 -0.47 10.34 36.01 0.37 -0.10 16 25 H 0.06 0.36 7.96 -51.93 -0.41 -0.06 16 26 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.21 7.71 -51.93 -0.40 -0.19 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.09 0.54 7.83 -51.93 -0.41 0.14 16 42 H 0.08 0.24 7.79 -51.93 -0.40 -0.16 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -34.37 359.80 -7.70 -42.06 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -7.46 Total: -6.96 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.79 Total: -14.92 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.77 Total: -27.63 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.97 Total: -15.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.37 -7.70 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224368950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.590 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds