Wall clock time and date at job start Tue Mar 31 2020 07:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 H 1.08997 * 110.10564 * 53.37363 * 3 2 1 5 5 O 1.45502 * 110.17769 * 291.71206 * 3 2 1 6 6 C 1.34594 * 107.68029 * 240.54716 * 5 3 2 7 7 O 1.21522 * 125.05022 * 180.25066 * 6 5 3 8 8 C 1.46954 * 109.89761 * 0.41304 * 6 5 3 9 9 O 1.35994 * 125.30328 * 179.82928 * 8 6 5 10 10 C 1.42897 * 117.00649 * 294.02136 * 9 8 6 11 11 C 1.52993 * 109.47571 * 175.41114 * 10 9 8 12 12 C 1.53000 * 109.47311 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47128 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47168 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00175 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00187 * 179.72790 * 15 14 13 18 18 N 1.31515 * 119.99567 * 0.27064 * 17 15 14 19 19 Si 1.86800 * 120.00196 * 180.27319 * 17 15 14 20 20 H 1.48495 * 109.47350 * 59.99710 * 19 17 15 21 21 H 1.48500 * 109.47075 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47160 * 299.99828 * 19 17 15 23 23 C 1.33393 * 109.38711 * 359.57340 * 8 6 5 24 24 C 1.50706 * 126.53686 * 180.24228 * 23 8 6 25 25 H 1.08992 * 109.47163 * 60.00217 * 1 2 3 26 26 H 1.09006 * 109.46793 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47309 * 299.99973 * 1 2 3 28 28 H 1.08996 * 109.47142 * 239.99357 * 2 1 3 29 29 H 1.09004 * 109.47335 * 119.99523 * 2 1 3 30 30 H 1.09002 * 109.46920 * 55.40851 * 10 9 8 31 31 H 1.09006 * 109.47261 * 295.41077 * 10 9 8 32 32 H 1.09002 * 109.47214 * 59.99917 * 11 10 9 33 33 H 1.09007 * 109.47268 * 300.00002 * 11 10 9 34 34 H 1.09001 * 109.47387 * 60.00202 * 12 11 10 35 35 H 1.08993 * 109.47306 * 299.99815 * 12 11 10 36 36 H 1.09002 * 109.46994 * 60.00265 * 13 12 11 37 37 H 1.08993 * 109.47188 * 300.00270 * 13 12 11 38 38 H 1.08994 * 109.47160 * 59.99956 * 14 13 12 39 39 H 1.09002 * 109.46763 * 300.00243 * 14 13 12 40 40 H 0.97007 * 119.99651 * 180.02562 * 18 17 15 41 41 H 1.09009 * 109.47110 * 5.14477 * 24 23 8 42 42 H 1.08998 * 109.47351 * 125.14673 * 24 23 8 43 43 H 1.08997 * 109.47168 * 245.14915 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5891 1.9993 0.8214 5 8 1.7309 2.0841 -1.2688 6 6 2.8953 2.4497 -1.8363 7 8 3.0027 3.0174 -2.9054 8 6 4.0176 2.0569 -0.9728 9 8 5.3323 2.2719 -1.2462 10 6 5.8852 1.5741 -2.3639 11 6 7.3304 2.0258 -2.5833 12 6 7.9225 1.2781 -3.7796 13 6 9.3676 1.7304 -3.9993 14 6 9.9599 0.9823 -5.1952 15 6 11.3833 1.4273 -5.4113 16 1 11.8216 2.1698 -4.7609 17 6 12.1279 0.8828 -6.4361 18 7 11.5941 -0.0211 -7.2283 19 14 13.8949 1.4288 -6.6991 20 1 14.6909 1.1332 -5.4809 21 1 14.4717 0.6983 -7.8562 22 1 13.9268 2.8888 -6.9690 23 6 3.5455 1.4616 0.1236 24 6 4.3589 0.9128 1.2674 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.2971 1.7920 -3.2554 31 1 5.8654 0.5018 -2.1688 32 1 7.9185 1.8079 -1.6918 33 1 7.3502 3.0981 -2.7785 34 1 7.3346 1.4957 -4.6713 35 1 7.9028 0.2061 -3.5840 36 1 9.9558 1.5132 -3.1077 37 1 9.3869 2.8025 -4.1951 38 1 9.3718 1.1990 -6.0869 39 1 9.9405 -0.0898 -4.9989 40 1 12.1181 -0.4045 -7.9491 41 1 5.4107 1.1545 1.1142 42 1 4.0166 1.3563 2.2024 43 1 4.2378 -0.1695 1.3130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224368952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:35 Heat of formation + Delta-G solvation = -132.186397 kcal Electronic energy + Delta-G solvation = -21483.273766 eV Core-core repulsion = 18107.581773 eV Total energy + Delta-G solvation = -3375.691993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98718 -38.74164 -37.96670 -35.51539 -34.66296 -33.41600 -32.71411 -30.46285 -28.61499 -27.17442 -26.40666 -23.67181 -23.10213 -21.34769 -21.12923 -20.84398 -20.01128 -18.12361 -16.91884 -16.60309 -16.27243 -16.15461 -15.54007 -15.22895 -14.75628 -14.43742 -14.42314 -14.09679 -13.81176 -13.59305 -13.34385 -12.87862 -12.66849 -12.39257 -12.35371 -12.28408 -11.85214 -11.60113 -11.56769 -11.34679 -11.25862 -11.14360 -10.87532 -10.48978 -10.45083 -10.40477 -9.94010 -9.62493 -9.29110 -9.20944 -9.00041 -8.30938 -5.96234 -3.98413 0.40073 2.24914 2.55360 3.11888 3.35746 3.39741 3.42529 3.50633 3.75706 4.11701 4.32825 4.49009 4.67912 4.74209 4.80531 4.99456 5.02757 5.03444 5.11954 5.15418 5.36680 5.38459 5.39245 5.46111 5.51001 5.58722 5.68287 5.73327 5.75062 6.01389 6.18797 6.24504 6.36820 6.49355 6.81383 6.87712 6.95568 7.18972 7.26952 7.72023 7.87644 8.04536 8.47522 9.08805 9.65278 11.15125 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035682 B = 0.002321 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.516620 B =12063.136010 C =12187.489123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C 0.104 3.896 4 H 0.126 0.874 5 O -0.313 6.313 6 C 0.480 3.520 7 O -0.442 6.442 8 C -0.014 4.014 9 O -0.297 6.297 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.122 4.122 24 C -0.096 4.096 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.337 -0.934 20.538 30.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C 0.048 3.952 4 H 0.143 0.857 5 O -0.229 6.229 6 C 0.321 3.679 7 O -0.326 6.326 8 C -0.061 4.061 9 O -0.213 6.213 10 C -0.014 4.014 11 C -0.152 4.152 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.341 -0.635 19.866 29.902 hybrid contribution 0.962 0.216 -0.399 1.063 sum -21.379 -0.420 19.467 28.917 Atomic orbital electron populations 1.21777 0.94033 1.02520 1.02772 1.21783 0.97653 0.92391 1.04250 1.22483 0.91718 0.96212 0.84750 0.85680 1.87491 1.30826 1.70382 1.34180 1.21672 0.83503 0.77207 0.85501 1.90942 1.85122 1.36846 1.19697 1.20790 0.86368 1.02195 0.96757 1.86098 1.17132 1.67375 1.50739 1.23112 0.95823 0.95239 0.87201 1.21627 0.91732 1.01756 1.00113 1.21593 0.98287 0.99414 0.95999 1.21612 0.92416 1.00104 1.00513 1.19105 0.95209 0.95321 0.92091 1.21251 0.97739 1.22971 1.13902 0.92765 1.25043 0.98368 0.95147 0.96034 1.69963 1.36874 1.28371 1.18409 0.86654 0.84974 0.78766 0.77579 1.20273 1.21317 1.20242 1.23427 0.95674 0.94817 0.98468 1.20460 0.99762 1.01130 0.93883 0.91734 0.91850 0.92232 0.90461 0.89058 0.91914 0.92434 0.91125 0.90998 0.92171 0.92286 0.93354 0.93293 0.96646 0.96693 0.92999 0.89641 0.89966 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.84 37.16 0.37 -0.31 16 2 C -0.12 -0.58 5.67 -26.73 -0.15 -0.73 16 3 C 0.10 0.68 3.63 -27.70 -0.10 0.58 16 4 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 5 O -0.31 -3.36 10.65 -39.84 -0.42 -3.79 16 6 C 0.48 6.47 8.49 34.26 0.29 6.76 16 7 O -0.44 -7.60 17.65 -19.77 -0.35 -7.95 16 8 C -0.01 -0.17 6.32 -37.75 -0.24 -0.41 16 9 O -0.30 -4.01 9.88 -19.73 -0.19 -4.21 16 10 C 0.06 0.81 6.04 37.15 0.22 1.03 16 11 C -0.11 -1.67 5.58 -26.73 -0.15 -1.82 16 12 C -0.12 -1.98 5.22 -26.73 -0.14 -2.11 16 13 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 14 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.12 -0.95 5.76 -100.86 -0.58 -1.53 16 24 C -0.10 -0.49 10.33 36.01 0.37 -0.11 16 25 H 0.06 0.38 7.96 -51.93 -0.41 -0.03 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.24 8.06 -51.93 -0.42 -0.18 16 30 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 0.56 7.83 -51.92 -0.41 0.15 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -33.99 363.60 -8.09 -42.08 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -7.52 Total: -7.28 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.80 Total: -14.60 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.97 Total: -15.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.99 -8.09 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224368952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.109 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds