Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 109.47072 * 2 1 4 4 C 1.46901 * 109.47435 * 120.00207 * 2 1 3 5 5 C 1.46901 * 109.47039 * 240.00310 * 2 1 3 6 6 C 1.53000 * 109.47223 * 63.50424 * 5 2 1 7 7 H 1.09006 * 109.47095 * 52.50318 * 6 5 2 8 8 C 1.50696 * 109.47134 * 172.50204 * 6 5 2 9 9 H 1.07998 * 120.00374 * 238.45104 * 8 6 5 10 10 C 1.37882 * 119.99877 * 58.45266 * 8 6 5 11 11 N 1.31506 * 120.00007 * 6.63342 * 10 8 6 12 12 Si 1.86803 * 119.99878 * 186.63515 * 10 8 6 13 13 H 1.48495 * 109.47135 * 94.99539 * 12 10 8 14 14 H 1.48500 * 109.46980 * 214.99924 * 12 10 8 15 15 H 1.48506 * 109.47405 * 334.99387 * 12 10 8 16 16 O 1.42892 * 109.47112 * 292.50271 * 6 5 2 17 17 C 1.35905 * 116.99887 * 156.13712 * 16 6 5 18 18 C 1.38671 * 119.99861 * 184.30478 * 17 16 6 19 19 C 1.38685 * 119.99968 * 179.76273 * 18 17 16 20 20 O 1.35888 * 119.99993 * 180.23857 * 19 18 17 21 21 C 1.38678 * 119.99443 * 0.51034 * 19 18 17 22 22 C 1.38671 * 119.99927 * 359.74536 * 21 19 18 23 23 O 1.35895 * 119.99631 * 179.97438 * 22 21 19 24 24 C 1.38668 * 120.00438 * 359.97438 * 22 21 19 25 25 H 1.08995 * 109.47204 * 49.70993 * 1 2 3 26 26 H 1.09002 * 109.46885 * 169.70475 * 1 2 3 27 27 H 1.08995 * 109.46763 * 289.70316 * 1 2 3 28 28 H 1.09003 * 109.47147 * 59.99851 * 3 2 1 29 29 H 1.08999 * 109.46965 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47289 * 300.00403 * 3 2 1 31 31 H 1.08996 * 109.47046 * 59.99740 * 4 2 1 32 32 H 1.08999 * 109.47411 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.46914 * 300.00368 * 4 2 1 34 34 H 1.09001 * 109.47314 * 183.50375 * 5 2 1 35 35 H 1.08998 * 109.47140 * 303.50842 * 5 2 1 36 36 H 0.97005 * 120.00150 * 179.97438 * 11 10 8 37 37 H 1.07997 * 120.00162 * 0.02562 * 18 17 16 38 38 H 0.96708 * 113.99635 * 270.27664 * 20 19 18 39 39 H 1.08000 * 119.99736 * 179.72292 * 21 19 18 40 40 H 0.96705 * 114.00131 * 270.02153 * 23 22 21 41 41 H 1.08007 * 120.00312 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9588 -0.6925 1.1994 5 6 1.9587 -0.6924 -1.1995 6 6 1.5220 0.0780 -2.4471 7 1 1.8219 1.1217 -2.3532 8 6 2.1752 -0.5249 -3.6640 9 1 2.8056 0.0834 -4.2957 10 6 1.9679 -1.8530 -3.9711 11 7 1.1001 -2.5598 -3.2807 12 14 2.9200 -2.6483 -5.3677 13 1 4.1224 -3.3284 -4.8229 14 1 2.0559 -3.6433 -6.0522 15 1 3.3385 -1.6053 -6.3385 16 8 0.1015 0.0009 -2.5816 17 6 -0.5054 0.9874 -3.2926 18 6 -1.8884 1.0236 -3.3871 19 6 -2.5079 2.0332 -4.1085 20 8 -3.8634 2.0714 -4.1971 21 6 -1.7438 3.0003 -4.7441 22 6 -0.3606 2.9609 -4.6539 23 8 0.3881 3.9084 -5.2771 24 6 0.2586 1.9548 -3.9277 25 1 -0.3633 0.6645 -0.7838 26 1 -0.3633 -1.0111 -0.1837 27 1 -0.3633 0.3465 0.9675 28 1 1.5953 1.8989 0.8900 29 1 3.0487 1.3850 -0.0005 30 1 1.5953 1.8989 -0.8899 31 1 1.5955 -1.7201 1.1994 32 1 3.0488 -0.6929 1.1992 33 1 1.5954 -0.1788 2.0894 34 1 3.0469 -0.7472 -1.1687 35 1 1.5449 -1.7003 -1.2315 36 1 0.9540 -3.4941 -3.4969 37 1 -2.4833 0.2681 -2.8954 38 1 -4.2225 1.5794 -4.9482 39 1 -2.2261 3.7839 -5.3096 40 1 0.6375 3.6795 -6.1830 41 1 1.3359 1.9240 -3.8578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225367224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = 12.217137 kcal Electronic energy + Delta-G solvation = -23834.266078 eV Core-core repulsion = 20413.065720 eV Total energy + Delta-G solvation = -3421.200358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.41607 -40.98356 -39.13263 -38.55175 -35.91607 -34.55519 -31.90496 -30.49561 -30.34876 -30.07073 -29.88077 -27.85852 -25.16975 -23.88337 -23.24341 -22.19091 -20.17387 -19.08759 -18.65830 -18.46335 -18.11161 -17.83646 -17.25596 -17.00057 -16.71004 -16.29281 -15.82669 -15.36685 -15.10299 -14.93554 -14.82812 -14.46140 -14.21574 -14.13223 -14.00383 -13.80528 -13.61600 -13.50965 -13.26668 -13.02553 -12.34692 -12.28568 -12.23081 -11.70178 -11.59569 -11.47378 -11.21784 -10.81946 -10.23501 -9.36701 -8.80588 -7.83924 -6.06535 0.25454 0.40203 0.63886 2.01915 2.18184 2.19613 2.21890 2.28188 2.31083 2.50405 2.77484 2.94493 3.10818 3.16632 3.36117 3.37743 3.45623 3.58703 3.61644 3.65669 3.70194 3.72131 3.77240 4.04549 4.16934 4.18991 4.32565 4.44186 4.44817 4.52136 4.75862 4.92356 5.07295 5.50466 5.60894 5.64559 5.78492 6.02315 6.17041 6.72333 6.77585 6.92757 7.14252 7.77886 9.17886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.273 5.273 3 C -0.048 4.048 4 C -0.040 4.040 5 C 0.001 3.999 6 C 0.191 3.809 7 H 0.049 0.951 8 C -0.568 4.568 9 H 0.079 0.921 10 C 0.091 3.909 11 N -0.855 5.855 12 Si 0.902 3.098 13 H -0.272 1.272 14 H -0.277 1.277 15 H -0.267 1.267 16 O -0.301 6.301 17 C 0.187 3.813 18 C -0.204 4.204 19 C 0.157 3.843 20 O -0.498 6.498 21 C -0.222 4.222 22 C 0.157 3.843 23 O -0.501 6.501 24 C -0.238 4.238 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.278 0.722 37 H 0.133 0.867 38 H 0.395 0.605 39 H 0.130 0.870 40 H 0.395 0.605 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 3.805 13.121 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.068 4.932 3 C -0.190 4.190 4 C -0.182 4.182 5 C -0.118 4.118 6 C 0.137 3.863 7 H 0.066 0.934 8 C -0.604 4.604 9 H 0.097 0.903 10 C -0.120 4.120 11 N -0.489 5.489 12 Si 0.728 3.272 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.191 1.191 16 O -0.214 6.214 17 C 0.140 3.860 18 C -0.223 4.223 19 C 0.112 3.888 20 O -0.309 6.309 21 C -0.242 4.242 22 C 0.113 3.887 23 O -0.311 6.311 24 C -0.257 4.257 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.251 0.749 39 H 0.148 0.852 40 H 0.252 0.748 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.243 4.075 14.290 14.911 hybrid contribution 0.568 -1.025 -1.880 2.216 sum 1.811 3.049 12.409 12.906 Atomic orbital electron populations 1.24276 0.76266 1.10345 1.07199 1.46371 1.15705 1.14833 1.16251 1.24091 1.05053 0.81393 1.08427 1.24008 1.04951 1.01979 0.87281 1.24769 1.03372 1.03165 0.80470 1.20386 0.78154 0.94682 0.93127 0.93368 1.21210 1.32730 0.96278 1.10179 0.90293 1.25056 0.93239 0.97061 0.96649 1.69735 1.29516 1.09877 1.39737 0.86342 0.79822 0.79658 0.81408 1.19699 1.20206 1.19067 1.86284 1.24550 1.44529 1.66051 1.18353 0.90826 0.86255 0.90576 1.20617 0.92380 1.01663 1.07684 1.17809 0.82639 0.93046 0.95285 1.84784 1.16662 1.76266 1.53184 1.21477 0.93387 1.02758 1.06538 1.17969 0.88668 0.87734 0.94364 1.84760 1.71638 1.42669 1.32081 1.21589 1.01509 0.96893 1.05698 0.85401 0.85975 0.88073 0.87019 0.86520 0.86299 0.86482 0.86782 0.87119 0.85705 0.82733 0.91138 0.84918 0.74859 0.85207 0.74815 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.34 7.10 60.07 0.43 0.77 16 2 N -0.27 2.69 0.05 -395.62 -0.02 2.67 16 3 C -0.05 0.52 7.56 60.06 0.45 0.98 16 4 C -0.04 0.51 8.00 60.07 0.48 0.99 16 5 C 0.00 0.00 3.48 -3.82 -0.01 -0.02 16 6 C 0.19 0.08 1.39 -27.88 -0.04 0.05 16 7 H 0.05 -0.07 4.01 -51.93 -0.21 -0.28 16 8 C -0.57 -3.42 7.94 -34.44 -0.27 -3.69 16 9 H 0.08 0.58 7.82 -52.49 -0.41 0.17 16 10 C 0.09 0.73 5.20 -17.82 -0.09 0.64 16 11 N -0.86 -6.94 11.06 55.43 0.61 -6.33 16 12 Si 0.90 7.49 29.54 -169.99 -5.02 2.47 16 13 H -0.27 -2.30 7.11 56.52 0.40 -1.90 16 14 H -0.28 -2.72 7.11 56.52 0.40 -2.32 16 15 H -0.27 -2.44 7.11 56.52 0.40 -2.03 16 16 O -0.30 -0.58 6.17 -19.44 -0.12 -0.70 16 17 C 0.19 0.55 6.07 -39.26 -0.24 0.31 16 18 C -0.20 -0.61 9.92 -39.26 -0.39 -1.00 16 19 C 0.16 0.49 6.70 -39.25 -0.26 0.23 16 20 O -0.50 -1.05 13.50 -19.39 -0.26 -1.32 16 21 C -0.22 -0.74 9.92 -39.26 -0.39 -1.13 16 22 C 0.16 0.53 6.70 -39.26 -0.26 0.26 16 23 O -0.50 -1.23 13.50 -19.41 -0.26 -1.49 16 24 C -0.24 -0.75 8.63 -39.26 -0.34 -1.09 16 25 H 0.13 -0.77 5.30 -51.93 -0.28 -1.04 16 26 H 0.12 -0.87 7.93 -51.93 -0.41 -1.28 16 27 H 0.10 -1.16 7.99 -51.93 -0.41 -1.58 16 28 H 0.11 -1.47 8.14 -51.93 -0.42 -1.89 16 29 H 0.12 -1.40 8.14 -51.93 -0.42 -1.83 16 30 H 0.12 -1.04 5.85 -51.93 -0.30 -1.35 16 31 H 0.12 -1.41 8.14 -51.93 -0.42 -1.83 16 32 H 0.11 -1.51 8.13 -51.93 -0.42 -1.93 16 33 H 0.11 -1.59 8.06 -51.93 -0.42 -2.01 16 34 H 0.12 -0.67 8.10 -51.93 -0.42 -1.09 16 35 H 0.16 -0.23 6.29 -51.93 -0.33 -0.56 16 36 H 0.28 2.45 8.31 -40.82 -0.34 2.11 16 37 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 38 H 0.39 -0.89 9.06 45.56 0.41 -0.47 16 39 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.40 -0.64 9.06 45.56 0.41 -0.23 16 41 H 0.14 0.41 5.66 -52.48 -0.30 0.12 16 LS Contribution 325.87 15.07 4.91 4.91 Total: 0.00 -18.49 325.87 -5.43 -23.92 By element: Atomic # 1 Polarization: -17.10 SS G_CDS: -4.33 Total: -21.44 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.94 Total: -2.69 kcal Atomic # 7 Polarization: -4.26 SS G_CDS: 0.59 Total: -3.66 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.64 Total: -3.50 kcal Atomic # 14 Polarization: 7.49 SS G_CDS: -5.02 Total: 2.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -18.49 -5.43 -23.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225367224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.138 kcal (2) G-P(sol) polarization free energy of solvation -18.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds