Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39022 * 120.85040 * 2 1 4 4 O 1.35539 * 120.47486 * 359.97438 * 3 2 1 5 5 N 1.32961 * 119.04900 * 180.02562 * 3 2 1 6 6 C 1.31771 * 120.86362 * 359.97438 * 5 3 2 7 7 N 1.31746 * 121.86924 * 359.71559 * 6 5 3 8 8 C 1.32985 * 120.86539 * 0.57593 * 7 6 5 9 9 O 1.35537 * 120.47422 * 179.71714 * 8 7 6 10 10 C 1.42898 * 117.00001 * 359.71562 * 9 8 7 11 11 H 1.09000 * 109.47149 * 30.00742 * 10 9 8 12 12 C 1.50698 * 109.47435 * 270.00284 * 10 9 8 13 13 H 1.07992 * 119.99891 * 125.70513 * 12 10 9 14 14 C 1.37882 * 119.99821 * 305.71299 * 12 10 9 15 15 N 1.31515 * 120.00429 * 6.28479 * 14 12 10 16 16 Si 1.86797 * 119.99690 * 186.29057 * 14 12 10 17 17 H 1.48503 * 109.46892 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47332 * 299.99631 * 16 14 12 19 19 H 1.48500 * 109.47376 * 59.99869 * 16 14 12 20 20 C 1.53004 * 109.46669 * 150.00313 * 10 9 8 21 21 N 1.46898 * 109.47102 * 291.53126 * 20 10 9 22 22 C 1.46903 * 109.46744 * 62.00672 * 21 20 10 23 23 C 1.46904 * 109.46755 * 181.99984 * 21 20 10 24 24 C 1.46892 * 109.47623 * 302.00417 * 21 20 10 25 25 H 1.08996 * 109.47555 * 269.98073 * 1 2 3 26 26 H 1.08998 * 109.46862 * 29.98171 * 1 2 3 27 27 H 1.09005 * 109.47069 * 149.97923 * 1 2 3 28 28 H 0.96698 * 114.00659 * 90.00315 * 4 3 2 29 29 H 1.07999 * 119.06238 * 179.97438 * 6 5 3 30 30 H 0.97001 * 119.99344 * 354.45157 * 15 14 12 31 31 H 1.08996 * 109.47296 * 51.53731 * 20 10 9 32 32 H 1.09002 * 109.46851 * 171.53440 * 20 10 9 33 33 H 1.08994 * 109.47306 * 47.35478 * 22 21 20 34 34 H 1.09004 * 109.47046 * 167.35454 * 22 21 20 35 35 H 1.08996 * 109.46859 * 287.35179 * 22 21 20 36 36 H 1.08995 * 109.46930 * 60.00544 * 23 21 20 37 37 H 1.09006 * 109.46756 * 180.02562 * 23 21 20 38 38 H 1.08996 * 109.47479 * 300.00155 * 23 21 20 39 39 H 1.09003 * 109.47451 * 59.99468 * 24 21 20 40 40 H 1.08995 * 109.47213 * 180.02562 * 24 21 20 41 41 H 1.09009 * 109.47037 * 300.00030 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2199 1.1935 0.0000 4 8 1.5695 2.3827 -0.0005 5 7 3.5489 1.1517 -0.0005 6 6 4.1889 -0.0001 -0.0005 7 7 3.5489 -1.1516 0.0055 8 6 2.2197 -1.1933 0.0005 9 8 1.5693 -2.3825 0.0010 10 6 2.3751 -3.5626 0.0009 11 1 3.3151 -3.3608 0.5143 12 6 2.6578 -3.9778 -1.4200 13 1 3.6765 -4.1232 -1.7474 14 6 1.6157 -4.1717 -2.3018 15 7 0.3858 -3.8762 -1.9417 16 14 1.9509 -4.8544 -4.0079 17 1 0.6728 -4.9679 -4.7555 18 1 2.8704 -3.9422 -4.7343 19 1 2.5758 -6.1964 -3.8902 20 6 1.6311 -4.6880 0.7226 21 7 1.5342 -4.3717 2.1539 22 6 0.7605 -3.1355 2.3307 23 6 0.8622 -5.4743 2.8545 24 6 2.8824 -4.1891 2.7075 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.3805 2.7281 0.8827 29 1 5.2689 -0.0001 -0.0014 30 1 0.2007 -3.5984 -1.0310 31 1 0.6298 -4.7886 0.3040 32 1 2.1746 -5.6240 0.5934 33 1 -0.1482 -3.1866 1.7311 34 1 0.4962 -3.0196 3.3819 35 1 1.3596 -2.2831 2.0106 36 1 1.4362 -6.3915 2.7233 37 1 0.7899 -5.2394 3.9165 38 1 -0.1382 -5.6098 2.4438 39 1 3.3810 -3.3710 2.1876 40 1 2.8104 -3.9548 3.7696 41 1 3.4565 -5.1064 2.5763 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226072152.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = 80.829176 kcal Electronic energy + Delta-G solvation = -24295.338780 eV Core-core repulsion = 20909.406414 eV Total energy + Delta-G solvation = -3385.932365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.160 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.69200 -42.08596 -39.59192 -38.23783 -35.34102 -33.79263 -33.27468 -31.60996 -30.60073 -30.53802 -28.26961 -27.73848 -25.41555 -24.70833 -23.85952 -22.73353 -20.40324 -19.82703 -19.29560 -18.78056 -18.52437 -18.12362 -17.91453 -16.87293 -16.32492 -15.61576 -15.28323 -15.25805 -15.15562 -14.97465 -14.75405 -14.51527 -14.38800 -14.27844 -14.19386 -14.07044 -13.86317 -13.84249 -13.42196 -13.15511 -13.00103 -12.61834 -12.07829 -12.03727 -11.31040 -11.28095 -10.96429 -10.42379 -10.24678 -10.07315 -9.54887 -8.05654 -6.02766 -0.04579 0.01581 0.27607 1.82959 2.02646 2.05959 2.13822 2.27417 2.36709 2.49041 2.54385 2.86573 2.94517 2.97667 3.10781 3.16863 3.22484 3.28721 3.37374 3.39705 3.54619 3.58493 3.60187 3.67734 3.82520 3.86277 3.93839 3.96588 4.10238 4.34346 4.48655 4.67144 4.76970 5.01766 5.13382 5.37431 5.91823 6.00006 6.33987 6.44666 6.72935 7.09356 7.22838 7.75081 9.27123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.237 4.237 3 C 0.377 3.623 4 O -0.470 6.470 5 N -0.564 5.564 6 C 0.348 3.652 7 N -0.568 5.568 8 C 0.392 3.608 9 O -0.306 6.306 10 C 0.174 3.826 11 H 0.078 0.922 12 C -0.618 4.618 13 H 0.076 0.924 14 C 0.046 3.954 15 N -0.860 5.860 16 Si 1.060 2.940 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.278 1.278 20 C -0.007 4.007 21 N -0.274 5.274 22 C -0.039 4.039 23 C -0.043 4.043 24 C -0.047 4.047 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.406 0.594 29 H 0.201 0.799 30 H 0.273 0.727 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 -4.212 18.727 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.244 4.244 3 C 0.192 3.808 4 O -0.277 6.277 5 N -0.293 5.293 6 C 0.060 3.940 7 N -0.299 5.299 8 C 0.206 3.794 9 O -0.211 6.211 10 C 0.120 3.880 11 H 0.096 0.904 12 C -0.655 4.655 13 H 0.094 0.906 14 C -0.166 4.166 15 N -0.494 5.494 16 Si 0.885 3.115 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.126 4.126 21 N 0.067 4.933 22 C -0.181 4.181 23 C -0.184 4.184 24 C -0.189 4.189 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.265 0.735 29 H 0.218 0.782 30 H 0.087 0.913 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.661 -4.727 16.724 17.391 hybrid contribution 0.040 0.502 1.639 1.715 sum -0.621 -4.225 18.363 18.853 Atomic orbital electron populations 1.20438 0.88477 1.04532 1.01821 1.20854 0.99546 0.90946 1.13016 1.18994 0.86568 0.84917 0.90273 1.84733 1.75146 1.33884 1.33958 1.68005 1.09552 1.31980 1.19765 1.24491 1.00568 0.80595 0.88380 1.68157 1.08460 1.31720 1.21586 1.19625 0.87061 0.86420 0.86292 1.86389 1.37855 1.12191 1.84677 1.20617 0.89290 0.78891 0.99187 0.90412 1.22065 0.97036 1.52865 0.93524 0.90596 1.26108 0.92428 0.92502 1.05569 1.71030 1.21081 1.37012 1.20228 0.83573 0.77060 0.76908 0.73973 1.19866 1.20514 1.20381 1.25122 1.09290 1.04643 0.73506 1.46458 1.14623 1.14912 1.17262 1.24234 1.00702 0.86719 1.06433 1.24073 1.02495 0.91117 1.00760 1.24122 0.82580 1.09042 1.03142 0.91833 0.90678 0.90019 0.73542 0.78243 0.91288 0.85039 0.84654 0.85993 0.87459 0.86442 0.86470 0.86883 0.86427 0.86045 0.86930 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.07 9.65 36.01 0.35 0.28 16 2 C -0.24 -0.61 5.94 -104.05 -0.62 -1.22 16 3 C 0.38 1.21 7.80 -16.77 -0.13 1.08 16 4 O -0.47 -0.75 12.74 -18.31 -0.23 -0.98 16 5 N -0.56 -2.23 10.46 -14.70 -0.15 -2.39 16 6 C 0.35 0.86 12.28 -92.22 -1.13 -0.28 16 7 N -0.57 -1.73 8.80 -14.71 -0.13 -1.86 16 8 C 0.39 1.15 6.53 -16.77 -0.11 1.04 16 9 O -0.31 -0.52 4.25 -18.31 -0.08 -0.60 16 10 C 0.17 0.15 1.63 -27.88 -0.05 0.10 16 11 H 0.08 -0.03 4.68 -51.93 -0.24 -0.27 16 12 C -0.62 -4.57 8.86 -34.44 -0.31 -4.88 16 13 H 0.08 0.70 7.82 -52.49 -0.41 0.29 16 14 C 0.05 0.44 5.24 -17.82 -0.09 0.35 16 15 N -0.86 -8.72 13.07 55.43 0.72 -8.00 16 16 Si 1.06 9.61 29.91 -169.99 -5.08 4.53 16 17 H -0.27 -2.85 7.11 56.52 0.40 -2.45 16 18 H -0.28 -2.80 7.11 56.52 0.40 -2.39 16 19 H -0.28 -2.27 7.11 56.52 0.40 -1.86 16 20 C -0.01 0.03 3.47 -3.82 -0.01 0.02 16 21 N -0.27 2.93 0.05 -395.62 -0.02 2.91 16 22 C -0.04 0.39 7.01 60.07 0.42 0.81 16 23 C -0.04 0.58 7.99 60.07 0.48 1.06 16 24 C -0.05 0.55 7.60 60.06 0.46 1.00 16 25 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 26 H 0.07 0.10 7.62 -51.93 -0.40 -0.29 16 27 H 0.08 0.22 7.63 -51.93 -0.40 -0.17 16 28 H 0.41 -1.62 9.06 45.56 0.41 -1.21 16 29 H 0.20 -0.16 8.06 -52.49 -0.42 -0.58 16 30 H 0.27 1.99 4.64 -40.82 -0.19 1.80 16 31 H 0.13 -0.35 6.12 -51.93 -0.32 -0.67 16 32 H 0.14 -0.78 8.11 -51.93 -0.42 -1.20 16 33 H 0.12 -1.06 7.87 -51.93 -0.41 -1.47 16 34 H 0.11 -1.39 7.94 -51.93 -0.41 -1.81 16 35 H 0.12 -0.85 5.18 -51.93 -0.27 -1.12 16 36 H 0.12 -1.65 8.14 -51.93 -0.42 -2.07 16 37 H 0.11 -1.74 8.05 -51.93 -0.42 -2.15 16 38 H 0.12 -1.54 8.14 -51.93 -0.42 -1.96 16 39 H 0.12 -1.08 5.84 -51.93 -0.30 -1.38 16 40 H 0.11 -1.57 8.14 -51.93 -0.42 -2.00 16 41 H 0.12 -1.50 8.14 -51.92 -0.42 -1.92 16 LS Contribution 323.93 15.07 4.88 4.88 Total: 0.00 -21.65 323.93 -5.94 -27.58 By element: Atomic # 1 Polarization: -20.35 SS G_CDS: -5.10 Total: -25.45 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -0.74 Total: -0.64 kcal Atomic # 7 Polarization: -9.75 SS G_CDS: 0.42 Total: -9.33 kcal Atomic # 8 Polarization: -1.27 SS G_CDS: -0.31 Total: -1.58 kcal Atomic # 14 Polarization: 9.61 SS G_CDS: -5.08 Total: 4.53 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -21.65 -5.94 -27.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226072152.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.414 kcal (2) G-P(sol) polarization free energy of solvation -21.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds