Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39022 * 120.85040 * 2 1 4 4 O 1.35539 * 120.47486 * 359.97438 * 3 2 1 5 5 N 1.32961 * 119.04900 * 180.02562 * 3 2 1 6 6 C 1.31771 * 120.86362 * 359.97438 * 5 3 2 7 7 N 1.31746 * 121.86924 * 359.71559 * 6 5 3 8 8 C 1.32985 * 120.86539 * 0.57593 * 7 6 5 9 9 O 1.35537 * 120.47422 * 179.71714 * 8 7 6 10 10 C 1.42898 * 117.00001 * 359.71562 * 9 8 7 11 11 H 1.09000 * 109.47149 * 30.00742 * 10 9 8 12 12 C 1.50698 * 109.47435 * 270.00284 * 10 9 8 13 13 H 1.07992 * 119.99891 * 125.70513 * 12 10 9 14 14 C 1.37882 * 119.99821 * 305.71299 * 12 10 9 15 15 N 1.31515 * 120.00429 * 6.28479 * 14 12 10 16 16 Si 1.86797 * 119.99690 * 186.29057 * 14 12 10 17 17 H 1.48503 * 109.46892 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47332 * 299.99631 * 16 14 12 19 19 H 1.48500 * 109.47376 * 59.99869 * 16 14 12 20 20 C 1.53004 * 109.46669 * 150.00313 * 10 9 8 21 21 N 1.46898 * 109.47102 * 291.53126 * 20 10 9 22 22 C 1.46903 * 109.46744 * 62.00672 * 21 20 10 23 23 C 1.46904 * 109.46755 * 181.99984 * 21 20 10 24 24 C 1.46892 * 109.47623 * 302.00417 * 21 20 10 25 25 H 1.08996 * 109.47555 * 269.98073 * 1 2 3 26 26 H 1.08998 * 109.46862 * 29.98171 * 1 2 3 27 27 H 1.09005 * 109.47069 * 149.97923 * 1 2 3 28 28 H 0.96698 * 114.00659 * 90.00315 * 4 3 2 29 29 H 1.07999 * 119.06238 * 179.97438 * 6 5 3 30 30 H 0.97001 * 119.99344 * 354.45157 * 15 14 12 31 31 H 1.08996 * 109.47296 * 51.53731 * 20 10 9 32 32 H 1.09002 * 109.46851 * 171.53440 * 20 10 9 33 33 H 1.08994 * 109.47306 * 47.35478 * 22 21 20 34 34 H 1.09004 * 109.47046 * 167.35454 * 22 21 20 35 35 H 1.08996 * 109.46859 * 287.35179 * 22 21 20 36 36 H 1.08995 * 109.46930 * 60.00544 * 23 21 20 37 37 H 1.09006 * 109.46756 * 180.02562 * 23 21 20 38 38 H 1.08996 * 109.47479 * 300.00155 * 23 21 20 39 39 H 1.09003 * 109.47451 * 59.99468 * 24 21 20 40 40 H 1.08995 * 109.47213 * 180.02562 * 24 21 20 41 41 H 1.09009 * 109.47037 * 300.00030 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2199 1.1935 0.0000 4 8 1.5695 2.3827 -0.0005 5 7 3.5489 1.1517 -0.0005 6 6 4.1889 -0.0001 -0.0005 7 7 3.5489 -1.1516 0.0055 8 6 2.2197 -1.1933 0.0005 9 8 1.5693 -2.3825 0.0010 10 6 2.3751 -3.5626 0.0009 11 1 3.3151 -3.3608 0.5143 12 6 2.6578 -3.9778 -1.4200 13 1 3.6765 -4.1232 -1.7474 14 6 1.6157 -4.1717 -2.3018 15 7 0.3858 -3.8762 -1.9417 16 14 1.9509 -4.8544 -4.0079 17 1 0.6728 -4.9679 -4.7555 18 1 2.8704 -3.9422 -4.7343 19 1 2.5758 -6.1964 -3.8902 20 6 1.6311 -4.6880 0.7226 21 7 1.5342 -4.3717 2.1539 22 6 0.7605 -3.1355 2.3307 23 6 0.8622 -5.4743 2.8545 24 6 2.8824 -4.1891 2.7075 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.3805 2.7281 0.8827 29 1 5.2689 -0.0001 -0.0014 30 1 0.2007 -3.5984 -1.0310 31 1 0.6298 -4.7886 0.3040 32 1 2.1746 -5.6240 0.5934 33 1 -0.1482 -3.1866 1.7311 34 1 0.4962 -3.0196 3.3819 35 1 1.3596 -2.2831 2.0106 36 1 1.4362 -6.3915 2.7233 37 1 0.7899 -5.2394 3.9165 38 1 -0.1382 -5.6098 2.4438 39 1 3.3810 -3.3710 2.1876 40 1 2.8104 -3.9548 3.7696 41 1 3.4565 -5.1064 2.5763 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226072152.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = 67.521148 kcal Electronic energy + Delta-G solvation = -24295.915859 eV Core-core repulsion = 20909.406414 eV Total energy + Delta-G solvation = -3386.509445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.10321 -42.15643 -39.66390 -38.35940 -35.68860 -34.00779 -33.48304 -31.51391 -29.71912 -29.63989 -28.38519 -27.75190 -25.51301 -24.44671 -23.99390 -22.64630 -20.56812 -20.02833 -19.22235 -18.42495 -17.98977 -17.82425 -17.51314 -16.97786 -16.38295 -15.82677 -15.62139 -15.41524 -14.92032 -14.61995 -14.47170 -14.34748 -14.01882 -13.91597 -13.47696 -13.45071 -13.40579 -13.25579 -13.24558 -13.16117 -13.05563 -12.79848 -12.75688 -12.14855 -12.07949 -11.43538 -11.30766 -10.86804 -10.67297 -10.41517 -9.75549 -8.68794 -6.62664 -0.20296 0.07770 0.80028 1.45824 1.56920 1.68843 1.83377 2.38429 2.43862 2.66676 2.70800 2.89030 2.92742 3.04559 3.16810 3.57434 3.77218 3.84563 3.93006 3.94216 4.08488 4.14525 4.16962 4.28802 4.34198 4.39174 4.43805 4.49144 4.63721 4.67152 4.70709 4.73141 4.86469 4.91269 5.03152 5.28760 5.57157 5.82461 5.98267 6.25635 6.51788 6.55232 7.04426 7.15528 8.69806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.244 4.244 3 C 0.371 3.629 4 O -0.479 6.479 5 N -0.585 5.585 6 C 0.342 3.658 7 N -0.578 5.578 8 C 0.381 3.619 9 O -0.298 6.298 10 C 0.172 3.828 11 H 0.090 0.910 12 C -0.626 4.626 13 H 0.048 0.952 14 C 0.023 3.977 15 N -0.898 5.898 16 Si 1.073 2.927 17 H -0.295 1.295 18 H -0.299 1.299 19 H -0.263 1.263 20 C 0.015 3.985 21 N -0.259 5.259 22 C -0.042 4.042 23 C -0.045 4.045 24 C -0.051 4.051 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.427 0.573 29 H 0.226 0.774 30 H 0.286 0.714 31 H 0.113 0.887 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.148 0.852 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 -4.766 21.989 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.251 4.251 3 C 0.187 3.813 4 O -0.290 6.290 5 N -0.315 5.315 6 C 0.055 3.945 7 N -0.310 5.310 8 C 0.195 3.805 9 O -0.203 6.203 10 C 0.118 3.882 11 H 0.107 0.893 12 C -0.664 4.664 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.534 5.534 16 Si 0.901 3.099 17 H -0.221 1.221 18 H -0.226 1.226 19 H -0.188 1.188 20 C -0.107 4.107 21 N 0.083 4.917 22 C -0.184 4.184 23 C -0.185 4.185 24 C -0.192 4.192 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.290 0.710 29 H 0.242 0.758 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.166 0.834 33 H 0.126 0.874 34 H 0.168 0.832 35 H 0.109 0.891 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.166 0.834 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.792 -5.290 20.012 20.715 hybrid contribution 0.149 0.754 0.697 1.037 sum -0.643 -4.537 20.709 21.209 Atomic orbital electron populations 1.20388 0.87320 1.02975 1.03646 1.21012 1.00390 0.90696 1.12967 1.19144 0.86600 0.85500 0.90076 1.84682 1.74911 1.33347 1.36077 1.68052 1.10077 1.32630 1.20727 1.25029 1.01657 0.80166 0.87667 1.68197 1.08644 1.32062 1.22059 1.19853 0.87276 0.87001 0.86345 1.86394 1.37262 1.12036 1.84581 1.20619 0.91483 0.79340 0.96709 0.89269 1.22208 0.95092 1.51960 0.97171 0.93322 1.26122 0.93116 0.93483 1.05888 1.70969 1.21258 1.39623 1.21592 0.83396 0.75385 0.77259 0.73869 1.22137 1.22576 1.18783 1.24256 1.07343 1.02042 0.77022 1.46031 1.15779 1.15839 1.14040 1.24263 0.99489 0.85857 1.08779 1.24312 1.02075 0.90195 1.01935 1.24281 0.81594 1.08668 1.04640 0.88326 0.91308 0.92218 0.70969 0.75777 0.90013 0.86879 0.83351 0.87357 0.83245 0.89077 0.85361 0.83621 0.86763 0.88947 0.83372 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.17 9.65 71.24 0.69 0.52 16 2 C -0.24 -1.46 5.94 -19.49 -0.12 -1.57 16 3 C 0.37 2.62 7.80 84.71 0.66 3.28 16 4 O -0.48 -1.61 12.74 -88.43 -1.13 -2.74 16 5 N -0.59 -5.03 10.46 -313.01 -3.27 -8.31 16 6 C 0.34 1.94 12.28 180.91 2.22 4.17 16 7 N -0.58 -4.15 8.80 -313.01 -2.76 -6.91 16 8 C 0.38 2.67 6.53 84.70 0.55 3.23 16 9 O -0.30 -1.38 4.25 -88.42 -0.38 -1.75 16 10 C 0.17 0.47 1.63 29.85 0.05 0.52 16 11 H 0.09 0.01 4.68 -2.39 -0.01 0.00 16 12 C -0.63 -10.59 8.86 25.60 0.23 -10.36 16 13 H 0.05 1.04 7.82 -2.91 -0.02 1.01 16 14 C 0.02 0.49 5.24 84.66 0.44 0.93 16 15 N -0.90 -20.23 13.07 21.45 0.28 -19.95 16 16 Si 1.07 22.23 29.91 68.60 2.05 24.28 16 17 H -0.30 -7.04 7.11 99.48 0.71 -6.34 16 18 H -0.30 -6.94 7.11 99.48 0.71 -6.23 16 19 H -0.26 -4.62 7.11 99.48 0.71 -3.91 16 20 C 0.01 -0.14 3.47 86.31 0.30 0.16 16 21 N -0.26 5.98 0.05 ******* -0.07 5.92 16 22 C -0.04 0.90 7.01 127.69 0.90 1.79 16 23 C -0.05 1.35 7.99 127.69 1.02 2.37 16 24 C -0.05 1.29 7.60 127.69 0.97 2.26 16 25 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.07 0.23 7.62 -2.39 -0.02 0.21 16 27 H 0.06 0.41 7.63 -2.38 -0.02 0.39 16 28 H 0.43 -3.54 9.06 -74.06 -0.67 -4.22 16 29 H 0.23 -0.28 8.06 -2.91 -0.02 -0.31 16 30 H 0.29 4.71 4.64 -92.71 -0.43 4.28 16 31 H 0.11 -0.53 6.12 -2.39 -0.01 -0.54 16 32 H 0.15 -1.80 8.11 -2.39 -0.02 -1.82 16 33 H 0.11 -1.92 7.87 -2.39 -0.02 -1.94 16 34 H 0.15 -4.41 7.94 -2.39 -0.02 -4.42 16 35 H 0.09 -1.35 5.18 -2.39 -0.01 -1.36 16 36 H 0.13 -4.00 8.14 -2.39 -0.02 -4.02 16 37 H 0.15 -5.15 8.05 -2.38 -0.02 -5.17 16 38 H 0.11 -3.21 8.14 -2.39 -0.02 -3.23 16 39 H 0.09 -1.69 5.84 -2.39 -0.01 -1.71 16 40 H 0.15 -4.71 8.14 -2.39 -0.02 -4.73 16 41 H 0.13 -3.65 8.14 -2.38 -0.02 -3.67 16 Total: 0.00 -53.83 323.93 3.35 -50.48 By element: Atomic # 1 Polarization: -49.02 SS G_CDS: 0.71 Total: -48.31 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 7.91 Total: 7.29 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: -5.82 Total: -29.25 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: -1.50 Total: -4.49 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: 2.05 Total: 24.28 kcal Total: -53.83 3.35 -50.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226072152.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.997 kcal (2) G-P(sol) polarization free energy of solvation -53.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds