Wall clock time and date at job start Tue Mar 31 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 120.76282 * 2 1 4 4 N 1.32460 * 119.24096 * 179.76247 * 3 2 1 5 5 C 1.32315 * 120.90695 * 0.52256 * 4 3 2 6 6 O 1.35455 * 119.16686 * 179.70974 * 5 4 3 7 7 N 1.32291 * 121.66699 * 359.72460 * 5 4 3 8 8 C 1.32776 * 120.66128 * 0.02562 * 7 5 4 9 9 O 1.35517 * 120.47061 * 180.02562 * 8 7 5 10 10 C 1.42896 * 117.00265 * 354.40773 * 9 8 7 11 11 H 1.09003 * 109.47030 * 332.95234 * 10 9 8 12 12 C 1.50706 * 109.47169 * 212.94981 * 10 9 8 13 13 H 1.07996 * 119.99709 * 354.06352 * 12 10 9 14 14 C 1.37878 * 119.99586 * 174.06227 * 12 10 9 15 15 N 1.31515 * 120.00437 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99558 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47167 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46993 * 119.99656 * 16 14 12 19 19 H 1.48496 * 109.47155 * 239.99500 * 16 14 12 20 20 C 1.53003 * 109.46910 * 92.95175 * 10 9 8 21 21 N 1.46894 * 109.47251 * 58.71149 * 20 10 9 22 22 C 1.46899 * 109.47036 * 63.95231 * 21 20 10 23 23 C 1.46900 * 109.47432 * 183.95219 * 21 20 10 24 24 C 1.46902 * 109.47114 * 303.95485 * 21 20 10 25 25 H 1.09003 * 109.47511 * 269.71986 * 1 2 3 26 26 H 1.08997 * 109.47306 * 29.72527 * 1 2 3 27 27 H 1.09007 * 109.46702 * 149.72096 * 1 2 3 28 28 H 1.07998 * 120.38160 * 0.02562 * 3 2 1 29 29 H 0.96701 * 113.99849 * 270.01982 * 6 5 4 30 30 H 0.96995 * 120.00280 * 180.02562 * 15 14 12 31 31 H 1.08997 * 109.47059 * 178.71323 * 20 10 9 32 32 H 1.08997 * 109.47012 * 298.70890 * 20 10 9 33 33 H 1.08995 * 109.47516 * 40.79026 * 22 21 20 34 34 H 1.09004 * 109.47397 * 160.79601 * 22 21 20 35 35 H 1.08999 * 109.47156 * 280.79249 * 22 21 20 36 36 H 1.08998 * 109.46645 * 59.99548 * 23 21 20 37 37 H 1.08992 * 109.47409 * 179.97438 * 23 21 20 38 38 H 1.09005 * 109.46696 * 300.00363 * 23 21 20 39 39 H 1.08999 * 109.47476 * 81.54156 * 24 21 20 40 40 H 1.09004 * 109.46732 * 201.54679 * 24 21 20 41 41 H 1.09004 * 109.47016 * 321.53505 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1878 0.0000 4 7 3.5381 1.1526 0.0048 5 6 4.1874 -0.0003 -0.0008 6 8 5.5419 0.0049 -0.0016 7 7 3.5471 -1.1579 -0.0059 8 6 2.2200 -1.1977 -0.0061 9 8 1.5680 -2.3857 -0.0109 10 6 2.3668 -3.5636 -0.1396 11 1 3.2848 -3.3231 -0.6758 12 6 1.5982 -4.6107 -0.9038 13 1 0.5671 -4.4349 -1.1725 14 6 2.2115 -5.7931 -1.2598 15 7 3.4673 -6.0070 -0.9330 16 14 1.2590 -7.0907 -2.2077 17 1 -0.1247 -6.6100 -2.4509 18 1 1.9302 -7.3466 -3.5073 19 1 1.2143 -8.3474 -1.4178 20 6 2.7136 -4.0990 1.2511 21 7 1.4758 -4.3939 1.9850 22 6 0.7458 -5.4700 1.3014 23 6 1.8062 -4.8181 3.3521 24 6 0.6373 -3.1887 2.0353 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3634 0.8924 -0.5095 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6928 2.1337 0.0004 29 1 5.9347 0.0107 -0.8852 30 1 3.8989 -6.8386 -1.1839 31 1 3.3036 -5.0102 1.1528 32 1 3.2892 -3.3505 1.7955 33 1 1.4510 -6.2279 0.9606 34 1 0.0330 -5.9211 1.9918 35 1 0.2116 -5.0594 0.4447 36 1 2.3478 -4.0196 3.8592 37 1 0.8877 -5.0364 3.8967 38 1 2.4283 -5.7123 3.3146 39 1 0.0852 -3.0908 1.1006 40 1 -0.0646 -3.2689 2.8654 41 1 1.2694 -2.3121 2.1776 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226325019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:28 Heat of formation + Delta-G solvation = 86.185346 kcal Electronic energy + Delta-G solvation = -24245.915992 eV Core-core repulsion = 20860.215887 eV Total energy + Delta-G solvation = -3385.700104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.160 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.37975 -42.18206 -39.57672 -38.09262 -35.34284 -34.45306 -33.74076 -31.47234 -30.24524 -30.01608 -28.14000 -27.80303 -25.68510 -24.53322 -23.80771 -23.02363 -20.58496 -19.52092 -19.11117 -18.34473 -18.26431 -18.10060 -17.20956 -16.86002 -16.37890 -16.14592 -15.57475 -15.26240 -14.96023 -14.87118 -14.77090 -14.47966 -14.02316 -13.92397 -13.75301 -13.64109 -13.58168 -13.41333 -13.20867 -13.06622 -12.85270 -12.66960 -12.46499 -12.21017 -12.01043 -11.71877 -11.31263 -10.93181 -10.33104 -10.20766 -9.75440 -8.07453 -6.18793 -0.22249 0.12659 0.55651 1.79367 1.84583 2.01764 2.06594 2.20860 2.51543 2.55158 2.60085 2.68218 2.75423 3.17696 3.25615 3.30347 3.41969 3.62878 3.69572 3.78284 3.81850 3.83256 3.93098 4.00492 4.06704 4.10567 4.21845 4.30758 4.37333 4.53869 4.71141 4.80152 4.84498 4.93341 5.16499 5.25581 5.68978 5.85398 5.99163 6.21471 6.51715 6.87594 7.02957 7.49916 8.98022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.227 4.227 3 C 0.190 3.810 4 N -0.546 5.546 5 C 0.526 3.474 6 O -0.459 6.459 7 N -0.575 5.575 8 C 0.381 3.619 9 O -0.298 6.298 10 C 0.198 3.802 11 H 0.097 0.903 12 C -0.562 4.562 13 H 0.086 0.914 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.903 3.097 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.014 4.014 21 N -0.252 5.252 22 C -0.036 4.036 23 C -0.042 4.042 24 C -0.031 4.031 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.178 0.822 29 H 0.415 0.585 30 H 0.285 0.715 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 2.442 10.012 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.233 4.233 3 C 0.027 3.973 4 N -0.275 5.275 5 C 0.222 3.778 6 O -0.263 6.263 7 N -0.316 5.316 8 C 0.193 3.807 9 O -0.203 6.203 10 C 0.143 3.857 11 H 0.115 0.885 12 C -0.598 4.598 13 H 0.104 0.896 14 C -0.135 4.135 15 N -0.501 5.501 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.198 1.198 20 C -0.135 4.135 21 N 0.090 4.910 22 C -0.176 4.176 23 C -0.184 4.184 24 C -0.172 4.172 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.195 0.805 29 H 0.276 0.724 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.169 0.831 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.117 0.883 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.876 2.158 10.600 12.310 hybrid contribution -0.450 -0.786 -1.042 1.381 sum -6.326 1.372 9.557 11.543 Atomic orbital electron populations 1.20521 0.88350 1.04008 1.02520 1.20855 0.99425 0.91727 1.11254 1.22887 0.87863 0.97868 0.88666 1.68047 1.10490 1.29822 1.19184 1.19900 0.85804 0.82642 0.89470 1.84684 1.11884 1.95076 1.34664 1.67593 1.09377 1.31904 1.22713 1.19826 0.86126 0.87525 0.87179 1.86462 1.36674 1.12530 1.84611 1.20583 0.95868 0.79125 0.90146 0.88544 1.20966 0.99769 0.99517 1.39530 0.89583 1.24995 0.95190 0.98777 0.94574 1.69755 1.10334 1.27101 1.42908 0.86281 0.80277 0.79873 0.80828 1.18640 1.19400 1.19752 1.24704 0.83997 1.07695 0.97139 1.45794 1.16310 1.15236 1.13655 1.24774 1.00232 0.91402 1.01216 1.24034 1.06426 1.05756 0.82191 1.24224 0.97708 0.87133 1.08176 0.91123 0.90848 0.90357 0.80471 0.72426 0.90414 0.83227 0.88920 0.86382 0.89987 0.83101 0.87461 0.87073 0.86734 0.84730 0.88265 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.35 9.86 36.01 0.35 0.71 16 2 C -0.23 0.19 5.93 -104.20 -0.62 -0.43 16 3 C 0.19 -0.05 10.99 -17.29 -0.19 -0.24 16 4 N -0.55 -1.47 10.46 -14.80 -0.15 -1.62 16 5 C 0.53 1.66 8.71 -91.28 -0.80 0.87 16 6 O -0.46 -1.03 13.64 -18.06 -0.25 -1.28 16 7 N -0.57 -1.68 8.85 -14.79 -0.13 -1.82 16 8 C 0.38 0.36 6.91 -16.72 -0.12 0.25 16 9 O -0.30 0.08 4.85 -18.24 -0.09 -0.01 16 10 C 0.20 0.33 2.01 -27.88 -0.06 0.27 16 11 H 0.10 0.59 7.01 -51.93 -0.36 0.22 16 12 C -0.56 -1.98 5.29 -34.44 -0.18 -2.16 16 13 H 0.09 0.30 7.03 -52.49 -0.37 -0.07 16 14 C 0.07 0.41 3.65 -17.82 -0.07 0.34 16 15 N -0.87 -6.21 11.77 55.43 0.65 -5.56 16 16 Si 0.90 5.08 29.54 -169.99 -5.02 0.05 16 17 H -0.26 -1.46 7.11 56.52 0.40 -1.06 16 18 H -0.27 -2.20 7.11 56.52 0.40 -1.80 16 19 H -0.27 -1.53 7.11 56.52 0.40 -1.13 16 20 C -0.01 0.03 4.05 -3.83 -0.02 0.02 16 21 N -0.25 1.79 0.05 -395.63 -0.02 1.77 16 22 C -0.04 0.21 6.89 60.06 0.41 0.62 16 23 C -0.04 0.42 7.85 60.06 0.47 0.89 16 24 C -0.03 0.25 7.00 60.07 0.42 0.67 16 25 H 0.07 -0.37 8.14 -51.93 -0.42 -0.80 16 26 H 0.07 -0.32 8.10 -51.93 -0.42 -0.74 16 27 H 0.08 -0.24 7.63 -51.93 -0.40 -0.63 16 28 H 0.18 -0.62 8.06 -52.49 -0.42 -1.05 16 29 H 0.42 -0.95 9.06 45.56 0.41 -0.54 16 30 H 0.29 2.18 8.31 -40.82 -0.34 1.84 16 31 H 0.15 -0.04 6.30 -51.93 -0.33 -0.37 16 32 H 0.09 -0.25 8.05 -51.93 -0.42 -0.67 16 33 H 0.12 -0.35 6.06 -51.93 -0.31 -0.67 16 34 H 0.08 -0.72 7.81 -51.93 -0.41 -1.13 16 35 H 0.15 -0.61 4.49 -51.93 -0.23 -0.84 16 36 H 0.11 -1.13 8.12 -51.93 -0.42 -1.56 16 37 H 0.11 -1.35 7.86 -51.93 -0.41 -1.76 16 38 H 0.11 -1.12 8.14 -51.93 -0.42 -1.54 16 39 H 0.13 -0.89 5.78 -51.93 -0.30 -1.19 16 40 H 0.10 -1.08 7.76 -51.93 -0.40 -1.49 16 41 H 0.10 -0.68 6.64 -51.93 -0.34 -1.03 16 LS Contribution 319.96 15.07 4.82 4.82 Total: 0.00 -14.13 319.96 -5.68 -19.82 By element: Atomic # 1 Polarization: -12.88 SS G_CDS: -5.12 Total: -17.99 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.38 Total: 1.81 kcal Atomic # 7 Polarization: -7.57 SS G_CDS: 0.35 Total: -7.22 kcal Atomic # 8 Polarization: -0.95 SS G_CDS: -0.33 Total: -1.28 kcal Atomic # 14 Polarization: 5.08 SS G_CDS: -5.02 Total: 0.05 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -14.13 -5.68 -19.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226325019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.000 kcal (2) G-P(sol) polarization free energy of solvation -14.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds