Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31776 * 119.06189 * 2 1 4 4 C 1.32960 * 120.86083 * 179.97438 * 3 2 1 5 5 O 1.35532 * 120.47129 * 180.02562 * 4 3 2 6 6 C 1.39027 * 119.04902 * 359.74620 * 4 3 2 7 7 C 1.38990 * 118.30351 * 0.49715 * 6 4 3 8 8 O 1.35539 * 120.47961 * 179.78386 * 7 6 4 9 9 C 1.42896 * 117.00245 * 184.62039 * 8 7 6 10 10 H 1.08997 * 109.47124 * 329.05956 * 9 8 7 11 11 C 1.50693 * 109.47179 * 209.05421 * 9 8 7 12 12 H 1.07998 * 120.00027 * 357.26586 * 11 9 8 13 13 C 1.37876 * 120.00195 * 177.26940 * 11 9 8 14 14 N 1.31519 * 119.99958 * 351.18947 * 13 11 9 15 15 Si 1.86797 * 120.00207 * 171.19325 * 13 11 9 16 16 H 1.48497 * 109.47328 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47225 * 119.99659 * 15 13 11 18 18 H 1.48501 * 109.47025 * 239.99583 * 15 13 11 19 19 C 1.53005 * 109.47055 * 89.05335 * 9 8 7 20 20 N 1.46901 * 109.47018 * 51.67324 * 19 9 8 21 21 C 1.46899 * 109.47127 * 54.49507 * 20 19 9 22 22 C 1.46898 * 109.47051 * 174.49523 * 20 19 9 23 23 C 1.46903 * 109.46974 * 294.49306 * 20 19 9 24 24 N 1.31745 * 119.06676 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47158 * 270.02017 * 1 2 3 26 26 H 1.09000 * 109.47223 * 30.02201 * 1 2 3 27 27 H 1.09003 * 109.46767 * 150.02208 * 1 2 3 28 28 H 0.96703 * 114.00363 * 90.00248 * 5 4 3 29 29 H 1.08002 * 120.84970 * 180.27238 * 6 4 3 30 30 H 0.96996 * 119.99459 * 1.98388 * 14 13 11 31 31 H 1.09001 * 109.46739 * 171.67505 * 19 9 8 32 32 H 1.08999 * 109.47442 * 291.67311 * 19 9 8 33 33 H 1.08994 * 109.47088 * 42.89359 * 21 20 19 34 34 H 1.09002 * 109.47154 * 162.89839 * 21 20 19 35 35 H 1.08997 * 109.46870 * 282.89459 * 21 20 19 36 36 H 1.09005 * 109.47308 * 59.99845 * 22 20 19 37 37 H 1.08999 * 109.47195 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.47015 * 300.00004 * 22 20 19 39 39 H 1.08997 * 109.46945 * 78.25627 * 23 20 19 40 40 H 1.09003 * 109.46492 * 198.25636 * 23 20 19 41 41 H 1.08996 * 109.47094 * 318.25321 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1518 0.0000 4 6 3.4760 1.1936 0.0005 5 8 4.1263 2.3827 0.0010 6 6 4.1889 0.0000 0.0064 7 6 3.4763 -1.1933 0.0010 8 8 4.1266 -2.3824 0.0020 9 6 3.3250 -3.5604 -0.1064 10 1 2.3547 -3.3836 0.3576 11 6 4.0150 -4.7036 0.5920 12 1 4.9902 -4.5577 1.0325 13 6 3.4014 -5.9359 0.6685 14 7 2.1495 -6.0719 0.2892 15 14 4.3482 -7.4125 1.3110 16 1 5.7285 -6.9979 1.6690 17 1 3.6656 -7.9530 2.5141 18 1 4.4034 -8.4605 0.2604 19 6 3.1280 -3.9091 -1.5831 20 7 4.4338 -3.9516 -2.2546 21 6 5.3229 -4.8759 -1.5383 22 6 4.2583 -4.4141 -3.6378 23 6 5.0260 -2.6073 -2.2593 24 7 2.1471 -1.1515 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 4.3148 2.7276 0.8846 29 1 5.2689 0.0000 0.0114 30 1 1.6668 -5.3117 -0.0712 31 1 2.6453 -4.8830 -1.6651 32 1 2.5014 -3.1522 -2.0548 33 1 4.7702 -5.7757 -1.2683 34 1 6.1621 -5.1438 -2.1804 35 1 5.6962 -4.3940 -0.6348 36 1 3.5986 -3.7283 -4.1693 37 1 5.2273 -4.4461 -4.1359 38 1 3.8189 -5.4117 -3.6344 39 1 5.4516 -2.3944 -1.2786 40 1 5.8107 -2.5586 -3.0143 41 1 4.2552 -1.8715 -2.4884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226509656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = 87.254538 kcal Electronic energy + Delta-G solvation = -24075.390960 eV Core-core repulsion = 20689.737219 eV Total energy + Delta-G solvation = -3385.653741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.160 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.60908 -42.29315 -39.77258 -38.56410 -35.79918 -33.71552 -33.48696 -31.38193 -30.39345 -30.22413 -29.57903 -27.72320 -25.27020 -24.69687 -24.00503 -23.19648 -20.27383 -19.89619 -19.28549 -18.75333 -18.45081 -17.97908 -17.51141 -16.99354 -16.62299 -16.26853 -15.63036 -15.35345 -15.16670 -15.05830 -14.83888 -14.62423 -14.48691 -14.16107 -13.97351 -13.71209 -13.58756 -13.54445 -13.41103 -13.13192 -13.05378 -12.58920 -12.47764 -12.07215 -11.64997 -11.54424 -11.13959 -10.69875 -10.55180 -10.17051 -10.13732 -8.33345 -6.18351 -0.33317 -0.05616 0.35934 1.62072 2.00910 2.15773 2.20766 2.24952 2.35564 2.37835 2.44189 2.55319 2.77136 2.87425 3.14207 3.24615 3.28892 3.46554 3.50848 3.60059 3.70418 3.73895 3.76711 3.80789 3.91561 3.98912 4.10455 4.21333 4.23365 4.29933 4.53884 4.56532 4.73971 4.74723 4.94127 5.12606 5.55646 5.82148 6.00861 6.20545 6.51402 6.76070 6.95292 7.44707 8.99392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.385 3.615 3 N -0.561 5.561 4 C 0.393 3.607 5 O -0.474 6.474 6 C -0.282 4.282 7 C 0.375 3.625 8 O -0.293 6.293 9 C 0.186 3.814 10 H 0.090 0.910 11 C -0.634 4.634 12 H 0.083 0.917 13 C 0.037 3.963 14 N -0.868 5.868 15 Si 1.062 2.938 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.029 4.029 20 N -0.251 5.251 21 C -0.028 4.028 22 C -0.044 4.044 23 C -0.046 4.046 24 N -0.575 5.575 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.414 0.586 29 H 0.156 0.844 30 H 0.275 0.725 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 4.691 -9.673 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.118 3.882 3 N -0.291 5.291 4 C 0.208 3.792 5 O -0.282 6.282 6 C -0.306 4.306 7 C 0.189 3.811 8 O -0.198 6.198 9 C 0.130 3.870 10 H 0.108 0.892 11 C -0.671 4.671 12 H 0.101 0.899 13 C -0.173 4.173 14 N -0.500 5.500 15 Si 0.886 3.114 16 H -0.202 1.202 17 H -0.197 1.197 18 H -0.201 1.201 19 C -0.151 4.151 20 N 0.091 4.909 21 C -0.169 4.169 22 C -0.186 4.186 23 C -0.187 4.187 24 N -0.307 5.307 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.274 0.726 29 H 0.174 0.826 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.014 2.948 -9.906 11.487 hybrid contribution 0.750 1.813 0.220 1.974 sum 5.763 4.761 -9.686 12.235 Atomic orbital electron populations 1.20696 0.84816 1.04634 1.04714 1.22836 0.97789 0.81097 0.86514 1.67922 1.09682 1.31273 1.20210 1.19080 0.86532 0.85324 0.88305 1.84693 1.74936 1.33861 1.34732 1.21873 1.03283 0.90197 1.15269 1.20020 0.87450 0.87156 0.86498 1.86366 1.36089 1.12340 1.84978 1.20722 0.96653 0.80722 0.88874 0.89244 1.21932 1.08061 0.94229 1.42829 0.89914 1.26103 0.95677 1.00926 0.94582 1.70958 1.07792 1.35717 1.35488 0.83545 0.75201 0.74163 0.78495 1.20222 1.19676 1.20077 1.24844 0.81980 1.08474 0.99765 1.45750 1.16299 1.14941 1.13935 1.24745 0.94597 0.97234 1.00278 1.24082 1.07563 1.05635 0.81277 1.24444 1.02363 0.82223 1.09684 1.68031 1.08374 1.31612 1.22693 0.88817 0.89047 0.89132 0.72603 0.82601 0.91306 0.84366 0.88386 0.85438 0.89605 0.84130 0.87347 0.86785 0.86457 0.84081 0.87579 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.08 10.32 36.01 0.37 0.46 16 2 C 0.38 0.63 7.64 -157.25 -1.20 -0.58 16 3 N -0.56 -1.30 10.36 -10.84 -0.11 -1.41 16 4 C 0.39 0.29 7.83 -16.77 -0.13 0.16 16 5 O -0.47 0.38 13.57 -18.29 -0.25 0.13 16 6 C -0.28 0.16 10.08 -39.01 -0.39 -0.23 16 7 C 0.37 0.22 6.55 -16.77 -0.11 0.11 16 8 O -0.29 0.02 5.78 -18.31 -0.11 -0.09 16 9 C 0.19 0.26 1.76 -27.88 -0.05 0.21 16 10 H 0.09 0.45 6.46 -51.93 -0.34 0.11 16 11 C -0.63 -2.67 5.28 -34.44 -0.18 -2.85 16 12 H 0.08 0.40 6.98 -52.49 -0.37 0.03 16 13 C 0.04 0.24 4.03 -17.82 -0.07 0.17 16 14 N -0.87 -7.58 12.91 55.43 0.72 -6.86 16 15 Si 1.06 5.97 29.38 -169.99 -4.99 0.98 16 16 H -0.28 -1.30 7.11 56.52 0.40 -0.89 16 17 H -0.27 -2.17 7.11 56.52 0.40 -1.77 16 18 H -0.28 -1.47 7.11 56.52 0.40 -1.07 16 19 C -0.03 0.09 3.84 -3.82 -0.01 0.08 16 20 N -0.25 1.88 0.05 -395.62 -0.02 1.86 16 21 C -0.03 0.17 6.78 60.06 0.41 0.57 16 22 C -0.04 0.46 7.88 60.06 0.47 0.93 16 23 C -0.05 0.38 7.00 60.07 0.42 0.80 16 24 N -0.58 -1.04 8.69 -10.85 -0.09 -1.13 16 25 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 26 H 0.09 -0.15 8.14 -51.93 -0.42 -0.58 16 27 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 28 H 0.41 -2.27 9.06 45.56 0.41 -1.86 16 29 H 0.16 -0.45 8.06 -52.49 -0.42 -0.87 16 30 H 0.28 2.11 6.02 -40.82 -0.25 1.86 16 31 H 0.14 -0.20 5.99 -51.93 -0.31 -0.51 16 32 H 0.10 -0.41 7.87 -51.93 -0.41 -0.82 16 33 H 0.13 -0.40 5.36 -51.93 -0.28 -0.67 16 34 H 0.09 -0.78 7.85 -51.93 -0.41 -1.19 16 35 H 0.14 -0.56 4.92 -51.93 -0.26 -0.82 16 36 H 0.11 -1.22 8.14 -51.93 -0.42 -1.64 16 37 H 0.11 -1.42 7.89 -51.93 -0.41 -1.83 16 38 H 0.12 -1.18 8.11 -51.93 -0.42 -1.60 16 39 H 0.14 -0.91 5.06 -51.93 -0.26 -1.18 16 40 H 0.11 -1.17 7.83 -51.93 -0.41 -1.58 16 41 H 0.10 -0.72 7.18 -51.93 -0.37 -1.09 16 LS Contribution 318.23 15.07 4.80 4.80 Total: 0.00 -15.47 318.23 -5.52 -20.99 By element: Atomic # 1 Polarization: -14.12 SS G_CDS: -4.98 Total: -19.09 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.48 Total: -0.17 kcal Atomic # 7 Polarization: -8.03 SS G_CDS: 0.49 Total: -7.54 kcal Atomic # 8 Polarization: 0.40 SS G_CDS: -0.35 Total: 0.04 kcal Atomic # 14 Polarization: 5.97 SS G_CDS: -4.99 Total: 0.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -15.47 -5.52 -20.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226509656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.244 kcal (2) G-P(sol) polarization free energy of solvation -15.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds