Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 109.46731 * 2 1 4 4 C 1.46896 * 109.47028 * 119.99773 * 2 1 3 5 5 C 1.46893 * 109.47059 * 239.99935 * 2 1 3 6 6 C 1.53006 * 109.47293 * 66.13759 * 5 2 1 7 7 H 1.09007 * 109.46768 * 52.85823 * 6 5 2 8 8 C 1.50700 * 109.47356 * 172.85584 * 6 5 2 9 9 H 1.08000 * 119.99694 * 120.00288 * 8 6 5 10 10 C 1.37872 * 120.00007 * 300.00092 * 8 6 5 11 11 N 1.31516 * 119.99847 * 179.97438 * 10 8 6 12 12 Si 1.86795 * 120.00197 * 0.02562 * 10 8 6 13 13 H 1.48508 * 109.47584 * 89.99774 * 12 10 8 14 14 H 1.48498 * 109.47422 * 209.99930 * 12 10 8 15 15 H 1.48502 * 109.46961 * 329.99688 * 12 10 8 16 16 O 1.42895 * 109.47189 * 292.86158 * 6 5 2 17 17 C 1.36094 * 117.00442 * 160.74485 * 16 6 5 18 18 C 1.38976 * 120.09071 * 273.57561 * 17 16 6 19 19 O 1.35994 * 120.04547 * 359.97438 * 18 17 16 20 20 C 1.38670 * 119.90864 * 179.71881 * 18 17 16 21 21 C 1.38228 * 120.09014 * 0.55254 * 20 18 17 22 22 C 1.38234 * 120.17707 * 359.71986 * 21 20 18 23 23 C 1.38662 * 120.09086 * 0.02562 * 22 21 20 24 24 O 1.35998 * 120.04670 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.47762 * 53.08268 * 1 2 3 26 26 H 1.09000 * 109.47339 * 173.08580 * 1 2 3 27 27 H 1.09007 * 109.47115 * 293.07866 * 1 2 3 28 28 H 1.08996 * 109.47043 * 63.48554 * 3 2 1 29 29 H 1.08996 * 109.46695 * 183.48634 * 3 2 1 30 30 H 1.09000 * 109.46852 * 303.48871 * 3 2 1 31 31 H 1.08997 * 109.47306 * 60.00551 * 4 2 1 32 32 H 1.09004 * 109.46834 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47407 * 300.00314 * 4 2 1 34 34 H 1.08998 * 109.46995 * 186.13405 * 5 2 1 35 35 H 1.09000 * 109.47191 * 306.14010 * 5 2 1 36 36 H 0.97001 * 119.99971 * 179.97438 * 11 10 8 37 37 H 0.96691 * 114.00375 * 96.09563 * 19 18 17 38 38 H 1.08002 * 119.95113 * 180.25104 * 20 18 17 39 39 H 1.07994 * 119.91118 * 179.74407 * 21 20 18 40 40 H 1.07995 * 119.95351 * 179.97438 * 22 21 20 41 41 H 0.96697 * 114.00205 * 269.98186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9586 -0.6924 1.1994 5 6 1.9586 -0.6925 -1.1994 6 6 1.5785 0.1123 -2.4439 7 1 1.9207 1.1410 -2.3299 8 6 2.2282 -0.5017 -3.6571 9 1 1.6180 -0.8666 -4.4700 10 6 3.6017 -0.5976 -3.7292 11 7 4.1688 -1.1339 -4.7878 12 14 4.6572 0.0329 -2.3229 13 1 4.8808 -1.0604 -1.3429 14 1 5.9642 0.4964 -2.8540 15 1 3.9657 1.1638 -1.6535 16 8 0.1587 0.0978 -2.6052 17 6 -0.3835 1.0651 -3.3942 18 6 -0.7087 2.3036 -2.8541 19 8 -0.4861 2.5511 -1.5355 20 6 -1.2556 3.2885 -3.6627 21 6 -1.4880 3.0359 -5.0017 22 6 -1.1711 1.8034 -5.5415 23 6 -0.6191 0.8149 -4.7409 24 8 -0.3072 -0.3972 -5.2730 25 1 -0.3634 0.6172 -0.8216 26 1 -0.3634 -1.0202 -0.1237 27 1 -0.3634 0.4029 0.9455 28 1 1.6471 1.8805 0.9195 29 1 3.0468 1.3857 -0.0625 30 1 1.5450 1.9166 -0.8571 31 1 1.5954 -1.7201 1.1995 32 1 3.0487 -0.6920 1.1996 33 1 1.5953 -0.1786 2.0894 34 1 3.0431 -0.7885 -1.1462 35 1 1.5083 -1.6835 -1.2560 36 1 5.1351 -1.2011 -4.8387 37 1 0.3490 3.0042 -1.3559 38 1 -1.5049 4.2526 -3.2446 39 1 -1.9178 3.8036 -5.6279 40 1 -1.3546 1.6098 -6.5880 41 1 -1.0266 -1.0419 -5.2314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227032033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = 32.963135 kcal Electronic energy + Delta-G solvation = -24653.803809 eV Core-core repulsion = 21233.503065 eV Total energy + Delta-G solvation = -3420.300744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.62143 -41.32711 -38.82741 -38.41475 -36.63329 -34.69129 -32.41644 -30.66939 -30.44009 -30.23691 -29.91506 -27.87334 -24.90797 -23.88157 -23.65611 -22.49942 -20.05813 -19.35197 -18.98422 -18.74353 -18.43815 -18.29795 -17.99918 -17.32017 -16.46920 -16.05604 -15.99425 -15.70072 -15.21335 -15.02308 -14.90238 -14.60607 -14.38277 -14.23512 -14.12584 -14.00849 -13.88123 -13.74987 -13.34779 -13.00903 -12.83794 -12.70157 -12.11618 -12.05800 -11.84129 -11.48713 -10.88773 -10.32220 -10.23882 -9.61098 -9.41916 -7.65484 -5.75544 0.07877 0.14817 0.21265 1.38075 1.53630 1.87466 2.07239 2.15320 2.19510 2.32919 2.66254 2.72297 2.88371 3.02810 3.07636 3.24586 3.36127 3.45275 3.53270 3.54487 3.60737 3.67096 3.72791 3.79798 3.95446 3.97176 4.05254 4.19620 4.38241 4.42476 4.61816 4.74240 4.78922 5.17309 5.34376 5.44806 5.55029 5.68876 6.09667 6.57238 6.86342 7.04531 7.68546 7.82373 9.45583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.270 5.270 3 C -0.053 4.053 4 C -0.048 4.048 5 C -0.020 4.020 6 C 0.189 3.811 7 H 0.031 0.969 8 C -0.556 4.556 9 H 0.124 0.876 10 C 0.081 3.919 11 N -0.846 5.846 12 Si 0.851 3.149 13 H -0.269 1.269 14 H -0.270 1.270 15 H -0.266 1.266 16 O -0.328 6.328 17 C 0.066 3.934 18 C 0.078 3.922 19 O -0.492 6.492 20 C -0.145 4.145 21 C -0.094 4.094 22 C -0.142 4.142 23 C 0.134 3.866 24 O -0.466 6.466 25 H 0.155 0.845 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.280 0.720 37 H 0.378 0.622 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 4.420 15.459 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 N 0.072 4.928 3 C -0.194 4.194 4 C -0.190 4.190 5 C -0.138 4.138 6 C 0.134 3.866 7 H 0.048 0.952 8 C -0.593 4.593 9 H 0.141 0.859 10 C -0.128 4.128 11 N -0.479 5.479 12 Si 0.680 3.320 13 H -0.197 1.197 14 H -0.195 1.195 15 H -0.192 1.192 16 O -0.246 6.246 17 C 0.021 3.979 18 C 0.033 3.967 19 O -0.303 6.303 20 C -0.164 4.164 21 C -0.112 4.112 22 C -0.160 4.160 23 C 0.088 3.912 24 O -0.276 6.276 25 H 0.173 0.827 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.124 4.163 15.384 17.457 hybrid contribution 1.142 0.319 0.645 1.350 sum -5.982 4.481 16.029 17.686 Atomic orbital electron populations 1.24617 0.75647 1.09826 1.09435 1.46389 1.16114 1.14772 1.15522 1.24351 1.05455 0.81486 1.08145 1.24113 1.05046 1.02092 0.87700 1.25590 1.03737 1.02205 0.82318 1.20692 0.78067 0.95456 0.92400 0.95157 1.21628 0.92558 1.42970 1.02142 0.85888 1.25081 0.97607 0.94432 0.95676 1.69764 1.12043 1.39006 1.27071 0.87562 0.83018 0.78475 0.82970 1.19651 1.19498 1.19225 1.85877 1.22405 1.50744 1.65533 1.19078 1.00258 0.89274 0.89315 1.18573 1.02353 0.92282 0.83454 1.84871 1.43863 1.80243 1.21342 1.21325 1.01968 0.99256 0.93847 1.20962 0.98896 0.96749 0.94614 1.21585 0.99598 0.93762 1.01070 1.18636 0.95580 0.88096 0.88861 1.85052 1.41202 1.20224 1.81103 0.82749 0.86980 0.87877 0.86424 0.86412 0.86647 0.86302 0.87000 0.86661 0.86441 0.84757 0.90888 0.76561 0.84890 0.84811 0.84525 0.75629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.50 7.28 60.06 0.44 0.93 16 2 N -0.27 2.43 0.05 -395.62 -0.02 2.41 16 3 C -0.05 0.50 7.04 60.07 0.42 0.93 16 4 C -0.05 0.57 7.99 60.06 0.48 1.05 16 5 C -0.02 0.07 3.36 -3.82 -0.01 0.05 16 6 C 0.19 0.26 1.31 -27.88 -0.04 0.22 16 7 H 0.03 0.02 4.82 -51.93 -0.25 -0.23 16 8 C -0.56 -4.83 9.02 -34.44 -0.31 -5.14 16 9 H 0.12 1.54 5.59 -52.49 -0.29 1.25 16 10 C 0.08 0.85 5.45 -17.82 -0.10 0.75 16 11 N -0.85 -12.36 13.96 55.43 0.77 -11.58 16 12 Si 0.85 4.48 24.24 -169.99 -4.12 0.36 16 13 H -0.27 -0.98 6.82 56.52 0.39 -0.60 16 14 H -0.27 -2.24 7.11 56.52 0.40 -1.83 16 15 H -0.27 -0.17 4.30 56.52 0.24 0.07 16 16 O -0.33 -0.23 6.37 -45.29 -0.29 -0.52 16 17 C 0.07 0.11 5.46 -39.03 -0.21 -0.10 16 18 C 0.08 -0.04 6.68 -39.15 -0.26 -0.30 16 19 O -0.49 2.00 10.21 -34.31 -0.35 1.65 16 20 C -0.15 0.09 9.98 -39.43 -0.39 -0.30 16 21 C -0.09 0.00 10.04 -39.59 -0.40 -0.39 16 22 C -0.14 -0.23 9.98 -39.43 -0.39 -0.62 16 23 C 0.13 0.43 6.54 -39.15 -0.26 0.17 16 24 O -0.47 -2.09 10.90 -34.32 -0.37 -2.47 16 25 H 0.16 -0.94 2.71 -51.93 -0.14 -1.08 16 26 H 0.11 -1.02 7.97 -51.93 -0.41 -1.44 16 27 H 0.10 -1.20 8.05 -51.93 -0.42 -1.62 16 28 H 0.12 -1.53 8.11 -51.93 -0.42 -1.95 16 29 H 0.12 -1.02 6.15 -51.93 -0.32 -1.34 16 30 H 0.12 -0.94 2.81 -51.93 -0.15 -1.09 16 31 H 0.12 -1.49 8.14 -51.93 -0.42 -1.91 16 32 H 0.11 -1.31 8.10 -51.93 -0.42 -1.73 16 33 H 0.11 -1.64 8.08 -51.93 -0.42 -2.06 16 34 H 0.12 -0.24 3.14 -51.93 -0.16 -0.40 16 35 H 0.13 -0.54 7.97 -51.93 -0.41 -0.95 16 36 H 0.28 3.78 8.31 -40.82 -0.34 3.44 16 37 H 0.38 -2.84 6.93 45.56 0.32 -2.53 16 38 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 39 H 0.13 -0.28 8.06 -52.49 -0.42 -0.71 16 40 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16 41 H 0.39 -0.08 9.06 45.56 0.41 0.34 16 LS Contribution 304.20 15.07 4.58 4.58 Total: 0.00 -20.87 304.20 -4.92 -25.79 By element: Atomic # 1 Polarization: -13.38 SS G_CDS: -4.09 Total: -17.47 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.03 Total: -2.75 kcal Atomic # 7 Polarization: -9.93 SS G_CDS: 0.75 Total: -9.17 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -1.01 Total: -1.34 kcal Atomic # 14 Polarization: 4.48 SS G_CDS: -4.12 Total: 0.36 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -20.87 -4.92 -25.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227032033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.749 kcal (2) G-P(sol) polarization free energy of solvation -20.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds