Wall clock time and date at job start Tue Mar 31 2020 06:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38507 * 121.01752 * 2 1 4 4 C 1.39316 * 117.96608 * 179.74326 * 3 2 1 5 5 O 1.35780 * 120.07933 * 180.26518 * 4 3 2 6 6 N 1.32206 * 119.84830 * 0.53741 * 4 3 2 7 7 N 1.28348 * 122.18173 * 359.72284 * 6 4 3 8 8 C 1.32208 * 122.18402 * 0.02562 * 7 6 4 9 9 O 1.35782 * 120.07604 * 180.02562 * 8 7 6 10 10 C 1.42907 * 116.99783 * 359.97438 * 9 8 7 11 11 H 1.09000 * 109.47261 * 29.99552 * 10 9 8 12 12 C 1.50706 * 109.46863 * 269.99925 * 10 9 8 13 13 H 1.07997 * 119.99848 * 119.99905 * 12 10 9 14 14 C 1.37876 * 120.00057 * 300.00228 * 12 10 9 15 15 N 1.31518 * 120.00095 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00068 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47015 * 59.99454 * 16 14 12 18 18 H 1.48498 * 109.47076 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47207 * 299.99688 * 16 14 12 20 20 C 1.52995 * 109.46835 * 150.00217 * 10 9 8 21 21 N 1.46901 * 109.47034 * 293.27282 * 20 10 9 22 22 C 1.46893 * 109.47200 * 64.52612 * 21 20 10 23 23 C 1.46900 * 109.47041 * 184.52411 * 21 20 10 24 24 C 1.46899 * 109.47136 * 304.52410 * 21 20 10 25 25 H 1.09001 * 109.47307 * 269.72188 * 1 2 3 26 26 H 1.09003 * 109.46575 * 29.71732 * 1 2 3 27 27 H 1.08999 * 109.47313 * 149.71901 * 1 2 3 28 28 H 1.07996 * 121.02105 * 359.97438 * 3 2 1 29 29 H 0.96702 * 113.99490 * 270.27818 * 5 4 3 30 30 H 0.96990 * 120.00130 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.47843 * 53.27451 * 20 10 9 32 32 H 1.09005 * 109.47003 * 173.27708 * 20 10 9 33 33 H 1.08997 * 109.47247 * 50.67787 * 22 21 20 34 34 H 1.08993 * 109.47212 * 170.68037 * 22 21 20 35 35 H 1.08999 * 109.47170 * 290.67989 * 22 21 20 36 36 H 1.09007 * 109.47154 * 60.00553 * 23 21 20 37 37 H 1.09005 * 109.47314 * 179.97438 * 23 21 20 38 38 H 1.08993 * 109.47436 * 300.00298 * 23 21 20 39 39 H 1.09003 * 109.47113 * 59.99862 * 24 21 20 40 40 H 1.08995 * 109.47124 * 180.02562 * 24 21 20 41 41 H 1.09002 * 109.47019 * 300.00214 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2208 1.1870 0.0000 4 6 3.6120 1.1129 0.0055 5 8 4.3541 2.2499 0.0112 6 7 4.2080 -0.0672 -0.0002 7 7 3.5466 -1.1671 -0.0056 8 6 2.2248 -1.1940 -0.0063 9 8 1.5683 -2.3825 -0.0115 10 6 2.3693 -3.5660 -0.0167 11 1 3.3101 -3.3704 0.4979 12 6 2.6509 -3.9757 -1.4394 13 1 3.6697 -4.0343 -1.7929 14 6 1.6078 -4.2757 -2.2897 15 7 0.3671 -4.2047 -1.8592 16 14 1.9568 -4.7842 -4.0530 17 1 2.7889 -6.0142 -4.0579 18 1 0.6753 -5.0512 -4.7540 19 1 2.6839 -3.6920 -4.7485 20 6 1.6206 -4.6917 0.6995 21 7 1.4877 -4.3619 2.1248 22 6 0.6475 -3.1663 2.2746 23 6 0.8657 -5.4892 2.8323 24 6 2.8169 -4.1006 2.6929 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3632 0.8926 -0.5095 27 1 -0.3634 -0.8874 -0.5182 28 1 1.7144 2.1409 -0.0004 29 1 4.5690 2.5836 -0.8706 30 1 -0.3666 -4.4161 -2.4572 31 1 0.6300 -4.8068 0.2593 32 1 2.1763 -5.6233 0.5924 33 1 -0.2761 -3.2984 1.7111 34 1 0.4122 -3.0173 3.3283 35 1 1.1831 -2.2960 1.8953 36 1 1.4892 -6.3764 2.7213 37 1 0.7675 -5.2447 3.8900 38 1 -0.1205 -5.6831 2.4108 39 1 3.2785 -3.2642 2.1680 40 1 2.7184 -3.8564 3.7506 41 1 3.4404 -4.9879 2.5818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227799283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:24 Heat of formation + Delta-G solvation = 90.311329 kcal Electronic energy + Delta-G solvation = -24106.472177 eV Core-core repulsion = 20720.950989 eV Total energy + Delta-G solvation = -3385.521188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.42401 -42.00316 -39.35135 -37.89402 -35.48697 -34.58933 -31.95781 -31.02750 -30.38843 -30.30642 -29.04982 -27.85953 -25.54270 -24.76217 -23.70000 -22.63762 -19.78225 -19.58649 -19.04400 -18.65553 -18.52252 -18.04095 -17.36667 -16.90488 -16.19101 -15.92075 -15.31041 -15.12251 -14.84219 -14.75028 -14.49900 -14.22534 -14.16592 -14.07288 -13.98975 -13.93724 -13.80436 -13.52797 -13.41205 -12.93579 -12.88219 -12.66000 -12.22778 -12.15540 -11.84529 -11.29339 -10.99380 -10.78770 -10.24494 -10.09938 -9.42916 -7.83220 -6.01251 -0.12232 0.14710 0.26457 2.01189 2.13089 2.21488 2.24660 2.28610 2.33241 2.35775 2.57777 2.82077 2.98624 3.12244 3.17150 3.36781 3.41474 3.46596 3.58079 3.61083 3.62699 3.71216 3.73191 3.81052 3.89133 4.06282 4.08740 4.09648 4.29240 4.41216 4.59034 4.59271 4.78893 4.91603 5.06698 5.16987 5.32934 6.13574 6.21534 6.44834 6.56515 7.19207 7.81960 7.92343 9.19945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.113 4.113 4 C 0.215 3.785 5 O -0.476 6.476 6 N -0.227 5.227 7 N -0.270 5.270 8 C 0.272 3.728 9 O -0.285 6.285 10 C 0.191 3.809 11 H 0.068 0.932 12 C -0.548 4.548 13 H 0.081 0.919 14 C 0.088 3.912 15 N -0.867 5.867 16 Si 0.904 3.096 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.003 4.003 21 N -0.273 5.273 22 C -0.041 4.041 23 C -0.040 4.040 24 C -0.049 4.049 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.402 0.598 30 H 0.279 0.721 31 H 0.159 0.841 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -1.622 14.543 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.027 3.973 5 O -0.281 6.281 6 N -0.080 5.080 7 N -0.130 5.130 8 C 0.086 3.914 9 O -0.190 6.190 10 C 0.137 3.863 11 H 0.086 0.914 12 C -0.585 4.585 13 H 0.099 0.901 14 C -0.121 4.121 15 N -0.502 5.502 16 Si 0.730 3.270 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.121 4.121 21 N 0.068 4.932 22 C -0.182 4.182 23 C -0.182 4.182 24 C -0.191 4.191 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.173 0.827 29 H 0.259 0.741 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.082 -2.611 15.092 15.623 hybrid contribution -0.982 0.714 -1.691 2.082 sum -4.063 -1.896 13.401 14.131 Atomic orbital electron populations 1.20728 0.88383 1.04738 1.02786 1.20443 0.98727 0.90153 1.01301 1.22353 0.93707 0.99596 0.98561 1.20668 0.88116 0.87569 1.00977 1.84833 1.72880 1.36086 1.34258 1.72657 1.31631 0.94601 1.09077 1.73079 1.05390 1.18030 1.16474 1.21379 0.90071 0.88114 0.91837 1.86547 1.36449 1.11226 1.84738 1.20402 0.88590 0.79089 0.98239 0.91433 1.21203 0.94786 1.48876 0.93642 0.90106 1.25086 0.94670 0.92109 1.00250 1.69594 0.98835 1.44038 1.37687 0.86362 0.78644 0.79957 0.82020 1.19197 1.20371 1.19393 1.24941 1.11415 1.03038 0.72750 1.46411 1.14298 1.14754 1.17737 1.24257 0.99311 0.88625 1.06010 1.24007 1.03402 0.90377 1.00401 1.24115 0.83660 1.08507 1.02815 0.90726 0.90843 0.89041 0.82725 0.74101 0.91070 0.82336 0.85609 0.85907 0.88029 0.86017 0.86706 0.87205 0.86463 0.86121 0.87181 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.13 9.86 36.01 0.36 0.48 16 2 C -0.09 -0.12 5.94 -104.12 -0.62 -0.74 16 3 C -0.11 -0.11 9.87 -39.08 -0.39 -0.50 16 4 C 0.22 0.68 7.85 -16.99 -0.13 0.55 16 5 O -0.48 -0.82 13.58 -19.05 -0.26 -1.08 16 6 N -0.23 -1.25 11.52 30.51 0.35 -0.90 16 7 N -0.27 -1.35 9.82 30.51 0.30 -1.05 16 8 C 0.27 0.82 6.70 -16.99 -0.11 0.71 16 9 O -0.29 -0.53 5.51 -19.06 -0.11 -0.64 16 10 C 0.19 0.29 1.62 -27.88 -0.05 0.24 16 11 H 0.07 0.05 4.70 -51.93 -0.24 -0.19 16 12 C -0.55 -4.03 8.90 -34.44 -0.31 -4.34 16 13 H 0.08 0.76 7.81 -52.49 -0.41 0.35 16 14 C 0.09 0.76 5.24 -17.82 -0.09 0.66 16 15 N -0.87 -6.75 10.95 55.43 0.61 -6.15 16 16 Si 0.90 8.16 29.54 -169.99 -5.02 3.14 16 17 H -0.27 -2.47 7.11 56.52 0.40 -2.07 16 18 H -0.28 -2.72 7.11 56.52 0.40 -2.32 16 19 H -0.27 -2.85 7.11 56.52 0.40 -2.45 16 20 C 0.00 0.01 3.52 -3.83 -0.01 0.00 16 21 N -0.27 2.60 0.05 -395.63 -0.02 2.59 16 22 C -0.04 0.36 7.17 60.06 0.43 0.79 16 23 C -0.04 0.50 8.00 60.06 0.48 0.98 16 24 C -0.05 0.50 7.54 60.06 0.45 0.95 16 25 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 26 H 0.07 -0.13 8.11 -51.93 -0.42 -0.55 16 27 H 0.09 0.06 7.62 -51.93 -0.40 -0.33 16 28 H 0.16 -0.26 8.06 -52.49 -0.42 -0.69 16 29 H 0.40 -1.13 9.06 45.56 0.41 -0.72 16 30 H 0.28 2.38 8.31 -40.82 -0.34 2.04 16 31 H 0.16 -0.23 6.12 -51.93 -0.32 -0.55 16 32 H 0.13 -0.59 8.09 -51.93 -0.42 -1.01 16 33 H 0.12 -0.98 7.94 -51.93 -0.41 -1.40 16 34 H 0.10 -1.21 8.00 -51.93 -0.42 -1.62 16 35 H 0.12 -0.75 4.96 -51.93 -0.26 -1.01 16 36 H 0.11 -1.50 8.12 -51.93 -0.42 -1.92 16 37 H 0.11 -1.57 8.07 -51.93 -0.42 -1.99 16 38 H 0.12 -1.42 8.14 -51.93 -0.42 -1.85 16 39 H 0.12 -0.85 5.86 -51.93 -0.30 -1.15 16 40 H 0.11 -1.37 8.14 -51.93 -0.42 -1.80 16 41 H 0.12 -1.31 8.14 -51.93 -0.42 -1.73 16 LS Contribution 327.89 15.07 4.94 4.94 Total: 0.00 -18.52 327.89 -4.47 -22.99 By element: Atomic # 1 Polarization: -18.35 SS G_CDS: -5.27 Total: -23.62 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 0.01 Total: -0.22 kcal Atomic # 7 Polarization: -6.75 SS G_CDS: 1.24 Total: -5.51 kcal Atomic # 8 Polarization: -1.35 SS G_CDS: -0.36 Total: -1.71 kcal Atomic # 14 Polarization: 8.16 SS G_CDS: -5.02 Total: 3.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -18.52 -4.47 -22.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227799283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.302 kcal (2) G-P(sol) polarization free energy of solvation -18.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds