Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47226 * 2 1 4 4 N 1.46902 * 109.47111 * 177.31758 * 3 2 1 5 5 C 1.46902 * 110.99884 * 195.60939 * 4 3 2 6 6 C 1.50696 * 109.47171 * 66.04831 * 5 4 3 7 7 H 1.08008 * 119.99921 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00259 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00077 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00056 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.46936 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46918 * 120.00337 * 10 8 6 13 13 H 1.48495 * 109.47016 * 239.99977 * 10 8 6 14 14 C 1.46900 * 110.99800 * 71.65961 * 4 3 2 15 15 C 1.50698 * 109.47109 * 198.03272 * 14 4 3 16 16 C 1.38422 * 120.43578 * 254.90508 * 15 14 4 17 17 C 1.38957 * 118.47095 * 179.97438 * 16 15 14 18 18 F 1.35101 * 120.38182 * 179.97438 * 17 16 15 19 19 C 1.38296 * 119.23422 * 0.02562 * 17 16 15 20 20 N 1.31951 * 120.79929 * 359.97438 * 19 17 16 21 21 C 1.32247 * 121.67334 * 359.73190 * 20 19 17 22 22 O 1.35719 * 119.66018 * 180.26480 * 21 20 19 23 23 C 1.42895 * 116.99910 * 4.80570 * 22 21 20 24 24 H 1.08997 * 109.47578 * 55.49239 * 1 2 3 25 25 H 1.08999 * 109.47036 * 175.49550 * 1 2 3 26 26 H 1.09004 * 109.46795 * 295.49211 * 1 2 3 27 27 H 1.09005 * 109.47276 * 239.99929 * 2 1 3 28 28 H 1.09010 * 109.47390 * 120.00270 * 2 1 3 29 29 H 1.09004 * 109.47105 * 57.32059 * 3 2 1 30 30 H 1.09002 * 109.47041 * 297.31935 * 3 2 1 31 31 H 1.09003 * 109.46834 * 186.05077 * 5 4 3 32 32 H 1.08997 * 109.47122 * 306.04830 * 5 4 3 33 33 H 0.96989 * 120.00112 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47084 * 318.03527 * 14 4 3 35 35 H 1.09000 * 109.47289 * 78.03285 * 14 4 3 36 36 H 1.08005 * 120.76230 * 359.95879 * 16 15 14 37 37 H 1.07995 * 119.59633 * 180.02562 * 19 17 16 38 38 H 1.09004 * 109.47656 * 303.30492 * 23 22 21 39 39 H 1.09002 * 109.47127 * 63.30355 * 23 22 21 40 40 H 1.09000 * 109.47407 * 183.30144 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5075 1.4429 0.0648 5 6 4.0177 2.7696 0.4361 6 6 3.5964 3.0931 1.8463 7 1 3.0089 2.3839 2.4106 8 6 3.9620 4.2940 2.4167 9 7 4.6787 5.1569 1.7301 10 14 3.4404 4.6947 4.1651 11 1 2.6485 3.5660 4.7163 12 1 4.6465 4.9092 5.0045 13 1 2.6123 5.9273 4.1644 14 6 4.0907 0.9913 -1.2056 15 6 5.5237 0.5815 -0.9829 16 6 6.5598 1.3961 -1.4060 17 6 7.8656 0.9785 -1.1793 18 9 8.9062 1.7431 -1.5767 19 6 8.0878 -0.2292 -0.5433 20 7 7.0776 -0.9827 -0.1522 21 6 5.8219 -0.6156 -0.3456 22 8 4.8142 -1.4199 0.0782 23 6 5.1824 -2.5881 0.8141 24 1 -0.3634 0.5822 -0.8468 25 1 -0.3633 -1.0245 -0.0807 26 1 -0.3633 0.4423 0.9277 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6379 1.9700 0.8650 30 1 1.7164 1.9422 -0.9131 31 1 5.1058 2.7713 0.3724 32 1 3.6127 3.5182 -0.2449 33 1 4.9355 6.0019 2.1312 34 1 3.5239 0.1404 -1.5834 35 1 4.0537 1.8036 -1.9315 36 1 6.3579 2.3345 -1.9012 37 1 9.1003 -0.5592 -0.3638 38 1 5.8685 -3.1911 0.2193 39 1 5.6699 -2.2935 1.7434 40 1 4.2897 -3.1710 1.0411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231745489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = -69.162034 kcal Electronic energy + Delta-G solvation = -22815.349628 eV Core-core repulsion = 19351.223023 eV Total energy + Delta-G solvation = -3464.126606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.90263 -41.70592 -38.87098 -38.55102 -34.94920 -34.66716 -33.07956 -31.53807 -29.32653 -28.15669 -27.53583 -25.91628 -24.17351 -23.69958 -22.59783 -21.33847 -19.38771 -18.80373 -18.47777 -18.15766 -17.18714 -16.75074 -16.42611 -16.16628 -16.04954 -15.79784 -15.40226 -15.21362 -14.85479 -14.39395 -14.08801 -14.02596 -13.90150 -13.78701 -13.55581 -12.93853 -12.82942 -12.70287 -12.59084 -12.52467 -12.38533 -11.98035 -11.94824 -11.61101 -11.38816 -11.23898 -10.82000 -10.76196 -10.60129 -9.28841 -8.95511 -8.20149 -6.28544 -0.06646 0.03262 1.37964 1.39128 1.52084 2.14437 2.38903 2.54891 3.04312 3.12697 3.22342 3.41593 3.73499 3.74893 4.10202 4.16376 4.23284 4.34553 4.49350 4.52591 4.53918 4.61522 4.69530 4.77115 4.82801 4.83253 4.91953 5.03229 5.05387 5.23008 5.24970 5.31747 5.38752 5.49686 5.58838 5.66922 6.07997 6.25289 6.40302 6.63263 6.68462 6.88354 7.40507 8.90790 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011195 B = 0.006945 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.475221 B = 4030.435950 C = 5463.574940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.064 3.936 4 N -0.532 5.532 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.106 3.894 15 C -0.121 4.121 16 C -0.076 4.076 17 C -0.001 4.001 18 F -0.135 7.135 19 C 0.116 3.884 20 N -0.525 5.525 21 C 0.327 3.673 22 O -0.296 6.296 23 C 0.036 3.964 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.005 0.995 32 H -0.039 1.039 33 H 0.263 0.737 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.149 0.851 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 -14.191 -6.080 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.064 4.064 4 N -0.255 5.255 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.203 1.203 14 C -0.022 4.022 15 C -0.125 4.125 16 C -0.102 4.102 17 C -0.023 4.023 18 F -0.114 7.114 19 C -0.041 4.041 20 N -0.248 5.248 21 C 0.148 3.852 22 O -0.202 6.202 23 C -0.059 4.059 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.024 0.976 32 H -0.022 1.022 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.166 0.834 37 H 0.218 0.782 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.447 -15.123 -5.315 16.036 hybrid contribution 0.095 2.282 -0.152 2.289 sum 0.542 -12.841 -5.468 13.967 Atomic orbital electron populations 1.21703 0.94595 1.02283 1.01611 1.21412 0.95871 0.94848 1.02079 1.22057 0.86996 0.97778 0.99521 1.62012 1.06775 1.27986 1.28764 1.19357 0.94016 0.83727 0.94465 1.21472 1.33034 1.01647 0.99386 0.92195 1.25843 0.95302 0.96194 1.02199 1.70080 1.38978 1.09350 1.38915 0.85438 0.78070 0.78271 0.79514 1.18770 1.20723 1.20288 1.20834 0.90230 0.99899 0.91281 1.19793 0.97292 0.93140 1.02261 1.21562 0.90803 0.99672 0.98186 1.18552 0.84280 0.93751 1.05749 1.91484 1.55909 1.74859 1.89137 1.22876 0.99496 0.88748 0.93018 1.67427 0.98901 1.34935 1.23553 1.19680 0.85938 0.88865 0.90744 1.86332 1.29457 1.36017 1.68363 1.23067 1.03233 0.84590 0.94992 0.92656 0.91046 0.93333 0.91666 0.92357 0.92257 0.96151 0.97645 1.02182 0.92846 0.88142 0.94625 0.83365 0.78161 0.91561 0.93452 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.10 -3.07 5.95 30.59 0.18 -2.89 16 3 C 0.06 2.44 4.81 86.30 0.41 2.85 16 4 N -0.53 -22.68 4.39 -905.37 -3.97 -26.65 16 5 C 0.21 11.16 4.56 85.56 0.39 11.55 16 6 C -0.52 -29.47 8.29 25.60 0.21 -29.26 16 7 H 0.06 3.39 7.25 -2.91 -0.02 3.37 16 8 C 0.00 0.14 5.46 84.65 0.46 0.61 16 9 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 10 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.11 3.78 4.59 85.56 0.39 4.17 16 15 C -0.12 -4.30 4.78 -19.67 -0.09 -4.39 16 16 C -0.08 -2.59 9.10 22.49 0.20 -2.39 16 17 C 0.00 -0.05 7.34 22.46 0.16 0.12 16 18 F -0.13 -4.14 17.28 44.97 0.78 -3.36 16 19 C 0.12 3.22 11.17 84.69 0.95 4.16 16 20 N -0.52 -16.22 9.15 -308.76 -2.82 -19.04 16 21 C 0.33 11.04 7.46 84.78 0.63 11.67 16 22 O -0.30 -9.23 9.83 -90.41 -0.89 -10.12 16 23 C 0.04 0.83 10.45 113.37 1.19 2.01 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.76 6.61 -2.38 -0.02 1.74 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.06 2.55 6.59 -2.38 -0.02 2.54 16 30 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 31 H 0.01 0.31 6.80 -2.39 -0.02 0.30 16 32 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 33 H 0.26 14.98 8.31 -92.72 -0.77 14.21 16 34 H 0.10 3.13 6.17 -2.39 -0.01 3.11 16 35 H 0.04 1.27 7.88 -2.39 -0.02 1.25 16 36 H 0.15 4.94 8.04 -2.91 -0.02 4.92 16 37 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.07 1.37 7.95 -2.38 -0.02 1.35 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -66.37 337.32 2.24 -64.14 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.03 Total: 8.79 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.81 Total: -4.50 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -6.51 Total: -101.85 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.89 Total: -10.12 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.36 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.37 2.24 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231745489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.027 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds