Wall clock time and date at job start Tue Mar 31 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47147 * 2 1 4 4 C 1.53008 * 109.47280 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47293 * 180.02562 * 4 3 2 6 6 C 1.36934 * 119.99938 * 95.09305 * 5 4 3 7 7 H 1.08003 * 120.00029 * 212.38717 * 6 5 4 8 8 C 1.38812 * 120.00288 * 32.11048 * 6 5 4 9 9 N 1.31623 * 119.99734 * 24.19280 * 8 6 5 10 10 Si 1.86800 * 120.00308 * 204.19487 * 8 6 5 11 11 H 1.48496 * 109.47124 * 60.00035 * 10 8 6 12 12 H 1.48496 * 109.47184 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46933 * 299.99847 * 10 8 6 14 14 C 1.46495 * 119.99847 * 275.09563 * 5 4 3 15 15 C 1.50698 * 109.47062 * 269.99513 * 14 5 4 16 16 C 1.38422 * 120.43637 * 260.00253 * 15 14 5 17 17 C 1.38953 * 118.46834 * 179.97438 * 16 15 14 18 18 F 1.35100 * 120.38046 * 179.97438 * 17 16 15 19 19 C 1.38288 * 119.23672 * 359.97438 * 17 16 15 20 20 N 1.31952 * 120.80001 * 0.02562 * 19 17 16 21 21 C 1.32239 * 121.67022 * 359.72650 * 20 19 17 22 22 O 1.35727 * 119.65593 * 180.26712 * 21 20 19 23 23 C 1.42898 * 117.00129 * 0.26211 * 22 21 20 24 24 H 1.08993 * 109.47438 * 60.00053 * 1 2 3 25 25 H 1.09009 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46657 * 299.99251 * 1 2 3 27 27 H 1.09007 * 109.47031 * 240.00098 * 2 1 3 28 28 H 1.09005 * 109.47662 * 120.00323 * 2 1 3 29 29 H 1.08994 * 109.47210 * 60.00457 * 3 2 1 30 30 H 1.09000 * 109.47295 * 300.00225 * 3 2 1 31 31 H 1.08994 * 109.47009 * 59.99865 * 4 3 2 32 32 H 1.09000 * 109.46757 * 300.00085 * 4 3 2 33 33 H 0.96992 * 119.99996 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47304 * 30.00123 * 14 5 4 35 35 H 1.09007 * 109.47184 * 150.00336 * 14 5 4 36 36 H 1.08005 * 120.76207 * 359.95433 * 16 15 14 37 37 H 1.08005 * 119.60297 * 180.02562 * 19 17 16 38 38 H 1.09000 * 109.47108 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.47127 * 300.00550 * 23 22 21 40 40 H 1.09005 * 109.46903 * 60.00288 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3863 3.4334 1.1814 7 1 4.2400 4.4970 1.2991 8 6 4.9015 2.6836 2.2299 9 7 5.5138 1.5443 1.9855 10 14 4.7258 3.2913 3.9875 11 1 3.2856 3.4321 4.3209 12 1 5.3558 2.3164 4.9136 13 1 5.3969 4.6089 4.1251 14 6 4.1957 3.5526 -1.2633 15 6 5.5771 3.3309 -1.8235 16 6 6.5620 4.2899 -1.6607 17 6 7.8214 4.0429 -2.1933 18 9 8.8110 4.9525 -2.0575 19 6 8.0501 2.8554 -2.8641 20 7 7.0893 1.9615 -3.0020 21 6 5.8801 2.1594 -2.5046 22 8 4.9239 1.2098 -2.6658 23 6 5.2974 0.0268 -3.3751 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9285 0.8891 33 1 5.8741 1.0206 2.7181 34 1 3.4529 3.1907 -1.9742 35 1 4.0417 4.6172 -1.0872 36 1 6.3561 5.2089 -1.1321 37 1 9.0269 2.6571 -3.2801 38 1 4.4430 -0.6476 -3.4321 39 1 5.6185 0.2931 -4.3821 40 1 6.1158 -0.4675 -2.8516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231747588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:27 Heat of formation + Delta-G solvation = -38.002104 kcal Electronic energy + Delta-G solvation = -23060.991309 eV Core-core repulsion = 19598.215900 eV Total energy + Delta-G solvation = -3462.775410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.45081 -40.11948 -37.24549 -36.33670 -33.99685 -32.60083 -30.96555 -29.85446 -28.08432 -26.83938 -25.93137 -23.81481 -22.72227 -22.09798 -20.76060 -19.81353 -17.96401 -17.29398 -16.78789 -16.34657 -15.80169 -15.07928 -14.92477 -14.53219 -14.42813 -14.03427 -13.73937 -13.49414 -13.34623 -12.91087 -12.82583 -12.55257 -12.26848 -12.02497 -11.76036 -11.53508 -11.29875 -10.94338 -10.78565 -10.71577 -10.67895 -10.39357 -10.27805 -10.02782 -9.83471 -9.44067 -9.28384 -9.14433 -8.48319 -7.76035 -6.69083 -5.85406 -3.33236 1.52378 1.65514 3.33944 3.40446 3.42393 3.55399 4.12779 4.45442 4.59958 4.72126 5.22432 5.25538 5.35687 5.47912 5.53746 5.55678 5.61689 5.70233 5.74692 5.79826 5.91508 6.00887 6.18974 6.25180 6.29899 6.32514 6.47269 6.55726 6.60920 6.74208 6.80545 6.92987 6.96664 7.03838 7.38211 7.70039 7.73078 7.86413 8.21278 8.43127 9.12306 9.75687 10.31761 11.14003 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.007591 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.186291 B = 3687.572384 C = 5314.937032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.132 4.132 4 C 0.135 3.865 5 N -0.567 5.567 6 C -0.258 4.258 7 H 0.065 0.935 8 C 0.011 3.989 9 N -0.878 5.878 10 Si 0.897 3.103 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.185 3.815 15 C -0.109 4.109 16 C -0.075 4.075 17 C 0.008 3.992 18 F -0.142 7.142 19 C 0.084 3.916 20 N -0.522 5.522 21 C 0.319 3.681 22 O -0.290 6.290 23 C 0.041 3.959 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.256 0.744 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 -0.797 -9.103 9.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.172 4.172 4 C 0.010 3.990 5 N -0.284 5.284 6 C -0.388 4.388 7 H 0.082 0.918 8 C -0.190 4.190 9 N -0.519 5.519 10 Si 0.726 3.274 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.057 3.943 15 C -0.116 4.116 16 C -0.102 4.102 17 C -0.014 4.014 18 F -0.121 7.121 19 C -0.072 4.072 20 N -0.245 5.245 21 C 0.138 3.862 22 O -0.196 6.196 23 C -0.055 4.055 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.007 -1.696 -9.307 9.671 hybrid contribution 0.447 0.909 1.418 1.743 sum -1.560 -0.786 -7.889 8.080 Atomic orbital electron populations 1.21770 0.97076 1.00387 1.01297 1.21449 0.94516 0.98610 1.01236 1.22124 1.00401 0.94186 1.00458 1.21247 0.89149 0.85706 1.02926 1.44162 1.71775 1.12464 1.00031 1.19122 1.36730 0.93800 0.89117 0.91762 1.25090 0.96854 0.97830 0.99182 1.70022 1.35423 1.15456 1.31038 0.86461 0.78094 0.78122 0.84728 1.20792 1.21632 1.20706 1.19982 0.88269 0.97105 0.88906 1.21120 1.02447 0.91547 0.96526 1.21254 0.90543 1.00551 0.97816 1.18554 0.86789 0.90298 1.05770 1.91443 1.60222 1.65767 1.94676 1.22066 0.98099 0.88623 0.98461 1.67194 1.00765 1.32354 1.24198 1.19594 0.85942 0.88460 0.92173 1.86354 1.34403 1.27211 1.71644 1.22754 1.01469 0.85415 0.95833 0.93285 0.93738 0.93145 0.92849 0.92518 0.92787 0.94048 0.93786 0.88740 0.93428 0.92559 0.92558 0.83736 0.82524 0.89150 0.93020 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.98 5.93 -26.74 -0.16 -2.14 16 3 C -0.13 -2.57 5.54 -26.73 -0.15 -2.72 16 4 C 0.14 3.08 5.25 -4.04 -0.02 3.06 16 5 N -0.57 -13.45 2.45 -174.61 -0.43 -13.88 16 6 C -0.26 -6.72 9.49 -15.06 -0.14 -6.87 16 7 H 0.06 1.65 7.94 -52.48 -0.42 1.24 16 8 C 0.01 0.31 4.89 -17.43 -0.09 0.22 16 9 N -0.88 -24.76 11.33 55.49 0.63 -24.13 16 10 Si 0.90 21.19 29.62 -169.99 -5.03 16.15 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.18 3.76 5.52 -5.20 -0.03 3.73 16 15 C -0.11 -2.20 5.49 -104.33 -0.57 -2.77 16 16 C -0.07 -1.41 9.80 -39.25 -0.38 -1.80 16 17 C 0.01 0.14 7.34 -39.30 -0.29 -0.15 16 18 F -0.14 -2.43 17.28 2.25 0.04 -2.39 16 19 C 0.08 1.44 11.16 -17.48 -0.20 1.24 16 20 N -0.52 -9.76 9.21 -13.28 -0.12 -9.88 16 21 C 0.32 6.32 7.47 -17.15 -0.13 6.19 16 22 O -0.29 -5.39 7.06 -18.89 -0.13 -5.53 16 23 C 0.04 0.60 10.38 101.05 1.05 1.64 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.99 5.22 -51.93 -0.27 0.72 16 32 H 0.10 2.48 5.28 -51.93 -0.27 2.21 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.06 1.07 7.80 -51.93 -0.41 0.67 16 35 H 0.06 1.08 7.93 -51.93 -0.41 0.66 16 36 H 0.14 2.53 8.06 -52.48 -0.42 2.11 16 37 H 0.16 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.69 8.10 -51.93 -0.42 0.26 16 40 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -28.86 336.39 -6.70 -35.56 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.98 Total: 1.07 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.74 Total: -2.04 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.08 Total: -47.89 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.13 Total: -5.53 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.86 -6.70 -35.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231747588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.444 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds