Wall clock time and date at job start Tue Mar 31 2020 07:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46701 * 2 1 4 4 C 1.53000 * 109.46701 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47155 * 179.61128 * 4 3 2 6 6 C 1.46892 * 111.00097 * 296.86788 * 5 4 3 7 7 C 1.50702 * 109.47119 * 288.56477 * 6 5 4 8 8 H 1.07999 * 120.00119 * 0.83477 * 7 6 5 9 9 C 1.37879 * 120.00152 * 180.83214 * 7 6 5 10 10 N 1.31511 * 120.00159 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00048 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46833 * 89.99887 * 11 9 7 13 13 H 1.48500 * 109.47652 * 210.00066 * 11 9 7 14 14 H 1.48503 * 109.47099 * 330.00393 * 11 9 7 15 15 C 1.46898 * 110.99927 * 60.82129 * 5 4 3 16 16 C 1.50701 * 109.47110 * 66.04322 * 15 5 4 17 17 N 1.29025 * 124.91293 * 90.00565 * 16 15 5 18 18 C 1.31782 * 117.12883 * 180.02562 * 17 16 15 19 19 C 1.50699 * 122.75757 * 179.97438 * 18 17 16 20 20 C 1.52993 * 109.47355 * 265.00018 * 19 18 17 21 21 C 1.33645 * 114.49642 * 0.22467 * 18 17 16 22 22 S 1.70977 * 124.92109 * 269.99937 * 16 15 5 23 23 H 1.08998 * 109.47270 * 59.99776 * 1 2 3 24 24 H 1.08999 * 109.47606 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47254 * 299.99864 * 1 2 3 26 26 H 1.08997 * 109.46619 * 240.00456 * 2 1 3 27 27 H 1.08998 * 109.47270 * 120.00224 * 2 1 3 28 28 H 1.08997 * 109.47211 * 60.00819 * 3 2 1 29 29 H 1.08998 * 109.47441 * 300.00119 * 3 2 1 30 30 H 1.08998 * 109.47253 * 59.61125 * 4 3 2 31 31 H 1.08999 * 109.47246 * 299.61192 * 4 3 2 32 32 H 1.08999 * 109.47256 * 48.56548 * 6 5 4 33 33 H 1.08997 * 109.47333 * 168.56794 * 6 5 4 34 34 H 0.97000 * 120.00242 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.47055 * 306.04658 * 15 5 4 36 36 H 1.08997 * 109.47571 * 186.04641 * 15 5 4 37 37 H 1.08999 * 109.46721 * 24.99728 * 19 18 17 38 38 H 1.08994 * 109.47335 * 144.99601 * 19 18 17 39 39 H 1.08995 * 109.47594 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.46851 * 300.00097 * 20 19 18 41 41 H 1.09001 * 109.47023 * 59.99166 * 20 19 18 42 42 H 1.07995 * 126.03943 * 179.76624 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0596 2.8275 -0.0088 6 6 3.6513 3.5220 -1.2371 7 6 4.4349 2.9800 -2.4047 8 1 5.1537 2.1886 -2.2519 9 6 4.2342 3.4945 -3.6680 10 7 4.9176 3.0212 -4.6871 11 14 2.9903 4.8628 -3.9325 12 1 3.6605 6.1784 -3.7733 13 1 2.4231 4.7586 -5.3010 14 1 1.8986 4.7393 -2.9334 15 6 3.6042 3.5550 1.1834 16 6 4.2424 2.9573 2.4109 17 7 5.3689 3.3336 2.9150 18 6 5.7848 2.7025 3.9946 19 6 7.0807 3.0379 4.6867 20 6 8.1842 2.1057 4.1827 21 6 4.9655 1.7372 4.4223 22 16 3.5785 1.6827 3.3371 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 3.9336 0.9226 -0.8856 31 1 3.9329 0.9349 0.8943 32 1 2.5868 3.3619 -1.4082 33 1 3.8461 4.5893 -1.1329 34 1 4.7767 3.3834 -5.5758 35 1 2.5199 3.4782 1.2638 36 1 3.8889 4.6038 1.1000 37 1 7.3512 4.0714 4.4704 38 1 6.9614 2.9112 5.7627 39 1 9.1217 2.3485 4.6829 40 1 7.9136 1.0722 4.3989 41 1 8.3035 2.2324 3.1066 42 1 5.1245 1.1037 5.2824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232472423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:50 Heat of formation + Delta-G solvation = 32.538135 kcal Electronic energy + Delta-G solvation = -20312.931720 eV Core-core repulsion = 17419.428341 eV Total energy + Delta-G solvation = -2893.503379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81812 -37.80753 -34.22529 -33.56615 -32.43311 -30.06055 -28.70170 -27.98212 -25.76908 -24.53440 -23.29036 -21.63153 -21.27494 -19.55314 -19.25540 -17.49212 -16.74274 -15.63239 -15.37887 -15.07507 -14.61001 -14.38003 -14.02819 -14.00104 -13.59992 -13.44556 -13.15029 -12.61319 -12.48243 -12.27513 -12.21608 -11.94742 -11.50567 -11.29602 -11.27190 -11.10483 -10.89747 -10.84469 -10.71782 -10.57203 -10.46051 -10.05538 -9.90999 -9.38648 -9.30330 -9.15861 -8.58263 -8.54185 -7.38632 -6.04160 -4.01061 0.85891 1.52884 1.90558 2.95499 3.28385 3.35745 3.36346 4.19253 4.41776 4.78370 4.96227 5.05040 5.18641 5.20658 5.27098 5.29059 5.31273 5.41226 5.45198 5.53895 5.61943 5.69760 5.81192 5.87621 5.99978 6.01180 6.06757 6.10285 6.13754 6.17601 6.29339 6.35636 6.45647 6.50276 6.74224 6.89006 6.97872 7.56473 7.81524 7.93526 8.00821 8.64597 9.05612 9.56949 11.09088 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.005426 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.666720 B = 5158.708573 C = 6407.118423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.159 4.159 4 C 0.055 3.945 5 N -0.513 5.513 6 C 0.160 3.840 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.118 3.882 16 C 0.088 3.912 17 N -0.460 5.460 18 C 0.074 3.926 19 C -0.048 4.048 20 C -0.146 4.146 21 C -0.276 4.276 22 S 0.104 5.896 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.000 1.000 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -3.644 18.397 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.198 4.198 4 C -0.073 4.073 5 N -0.237 5.237 6 C 0.035 3.965 7 C -0.542 4.542 8 H 0.098 0.902 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.014 4.014 16 C -0.192 4.192 17 N -0.174 5.174 18 C -0.059 4.059 19 C -0.088 4.088 20 C -0.204 4.204 21 C -0.415 4.415 22 S 0.359 5.641 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.017 0.983 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.144 -3.789 17.872 18.734 hybrid contribution -0.718 0.900 0.122 1.158 sum -4.862 -2.889 17.995 18.863 Atomic orbital electron populations 1.21770 0.96454 1.01008 1.01538 1.21415 0.95269 0.97028 1.01907 1.22283 0.98705 0.97024 1.01834 1.22259 0.91617 0.90942 1.02497 1.62163 1.58804 1.01805 1.00885 1.20278 0.94897 0.94093 0.87260 1.20960 1.22554 1.21078 0.89643 0.90157 1.24863 0.95810 0.96560 0.95957 1.69886 1.41403 1.42771 0.99821 0.86918 0.82331 0.83214 0.77629 1.20132 1.21225 1.19263 1.20768 0.95676 0.98899 0.86066 1.27095 0.94097 0.97252 1.00749 1.66105 1.12140 1.29147 1.10010 1.20306 0.98378 0.93987 0.93185 1.20103 0.89472 1.01148 0.98103 1.21730 0.97361 0.98992 1.02281 1.26707 0.99823 1.07269 1.07664 1.83961 1.23707 1.35703 1.20724 0.92786 0.93179 0.93227 0.91658 0.92442 0.93110 0.90732 0.89102 0.92473 0.98250 0.95772 0.92680 0.92953 0.88315 0.90098 0.90647 0.92168 0.92758 0.91931 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.62 5.93 -26.73 -0.16 -1.77 16 3 C -0.16 -2.56 4.57 -26.73 -0.12 -2.68 16 4 C 0.06 1.03 4.93 -3.82 -0.02 1.01 16 5 N -0.51 -10.63 4.65 -237.53 -1.10 -11.73 16 6 C 0.16 3.78 3.66 -4.98 -0.02 3.76 16 7 C -0.50 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.08 2.48 7.70 -52.49 -0.40 2.08 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 11 Si 0.87 21.19 27.45 -169.99 -4.67 16.52 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.19 6.57 56.52 0.37 -5.82 16 15 C 0.12 2.05 5.31 -4.98 -0.03 2.02 16 16 C 0.09 1.44 6.17 -13.46 -0.08 1.36 16 17 N -0.46 -7.91 10.53 -8.06 -0.08 -7.99 16 18 C 0.07 1.05 5.99 -84.22 -0.50 0.54 16 19 C -0.05 -0.54 6.35 -27.89 -0.18 -0.71 16 20 C -0.15 -1.54 9.89 37.15 0.37 -1.18 16 21 C -0.28 -3.44 11.14 29.12 0.32 -3.12 16 22 S 0.10 1.38 21.64 -107.50 -2.33 -0.95 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.75 6.31 -51.93 -0.33 0.42 16 29 H 0.07 1.36 6.23 -51.93 -0.32 1.03 16 30 H 0.09 1.91 7.16 -51.93 -0.37 1.54 16 31 H 0.06 0.99 6.00 -51.93 -0.31 0.67 16 32 H 0.00 0.00 5.01 -51.93 -0.26 -0.26 16 33 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.05 0.82 6.03 -51.93 -0.31 0.51 16 36 H 0.10 1.74 7.87 -51.93 -0.41 1.33 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -30.82 344.76 -9.58 -40.40 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.91 Total: -0.06 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.46 Total: -14.74 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.42 Total: -46.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.33 Total: -0.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.82 -9.58 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232472423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.939 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds