Wall clock time and date at job start Tue Mar 31 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99590 * 2 1 4 4 C 1.50696 * 109.47377 * 293.95022 * 3 2 1 5 5 H 1.08006 * 119.99677 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00401 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99612 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00270 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47246 * 59.99911 * 8 6 4 10 10 H 1.48499 * 109.46830 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46892 * 299.99959 * 8 6 4 12 12 C 1.46902 * 111.00044 * 123.95001 * 2 1 3 13 13 C 1.50706 * 109.46577 * 66.04813 * 12 2 1 14 14 C 1.38313 * 120.35702 * 269.71983 * 13 12 2 15 15 N 1.31889 * 121.02445 * 179.75243 * 14 13 12 16 16 C 1.31747 * 121.85306 * 0.54372 * 15 14 13 17 17 C 1.39303 * 120.59700 * 359.72252 * 16 15 14 18 18 C 1.48389 * 120.53823 * 179.97438 * 17 16 15 19 19 C 1.39336 * 120.12391 * 179.74996 * 18 17 16 20 20 C 1.38022 * 119.87888 * 179.74385 * 19 18 17 21 21 C 1.38323 * 120.11844 * 0.52677 * 20 19 18 22 22 C 1.38319 * 120.24644 * 359.72321 * 21 20 19 23 23 C 1.38020 * 120.12066 * 0.02562 * 22 21 20 24 24 C 1.38412 * 120.35881 * 89.99986 * 13 12 2 25 25 H 1.09004 * 109.47329 * 296.04977 * 1 2 3 26 26 H 1.09001 * 109.47296 * 56.04489 * 1 2 3 27 27 H 1.08997 * 109.47027 * 176.04633 * 1 2 3 28 28 H 1.08994 * 109.47186 * 53.95799 * 3 2 1 29 29 H 1.09005 * 109.46327 * 173.95142 * 3 2 1 30 30 H 0.97005 * 120.00007 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46894 * 306.05046 * 12 2 1 32 32 H 1.09000 * 109.47263 * 186.04612 * 12 2 1 33 33 H 1.07994 * 119.48821 * 0.02562 * 14 13 12 34 34 H 1.08000 * 119.70544 * 179.70694 * 16 15 14 35 35 H 1.07999 * 120.05584 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.93662 * 180.25153 * 20 19 18 37 37 H 1.08001 * 119.87449 * 179.74377 * 21 20 19 38 38 H 1.08000 * 119.93730 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.06441 * 179.97438 * 23 22 21 40 40 H 1.08010 * 120.84084 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7135 4.0013 -0.6158 8 14 1.5826 4.1869 -3.1381 9 1 0.1053 4.2243 -3.2848 10 1 2.1148 5.5733 -3.1381 11 1 2.1734 3.4293 -4.2704 12 6 1.9954 -0.7659 1.1376 13 6 1.6369 -2.2204 0.9729 14 6 0.4550 -2.7126 1.4963 15 7 0.1259 -3.9820 1.3556 16 6 0.9052 -4.8366 0.7246 17 6 2.1149 -4.4197 0.1738 18 6 2.9919 -5.3834 -0.5362 19 6 4.1977 -4.9561 -1.0884 20 6 5.0120 -5.8578 -1.7431 21 6 4.6280 -7.1815 -1.8610 22 6 3.4297 -7.6101 -1.3192 23 6 2.6100 -6.7180 -0.6580 24 6 2.4894 -3.0793 0.3011 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 1.5610 1.9274 0.8309 29 1 3.0797 1.3444 0.1083 30 1 2.9880 4.9175 -0.7777 31 1 1.5610 -0.3871 2.0628 32 1 3.0797 -0.6610 1.1757 33 1 -0.2107 -2.0463 2.0246 34 1 0.6037 -5.8696 0.6338 35 1 4.4962 -3.9218 -1.0011 36 1 5.9487 -5.5284 -2.1680 37 1 5.2663 -7.8829 -2.3777 38 1 3.1345 -8.6446 -1.4145 39 1 1.6744 -7.0536 -0.2356 40 1 3.4206 -2.7226 -0.1141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232897476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:41 Heat of formation + Delta-G solvation = 61.479168 kcal Electronic energy + Delta-G solvation = -20663.281678 eV Core-core repulsion = 17635.589325 eV Total energy + Delta-G solvation = -3027.692353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45591 -38.89651 -36.64321 -33.42673 -33.03434 -31.91146 -31.05197 -29.21937 -27.32179 -26.83391 -24.43229 -24.06207 -22.93094 -21.71506 -20.99639 -20.07824 -17.65779 -16.57238 -16.45570 -16.30604 -15.64327 -15.03608 -14.62960 -14.45816 -14.10261 -13.93154 -13.76576 -13.61648 -13.51659 -12.85501 -12.81527 -12.65291 -11.98806 -11.80455 -11.54388 -11.37417 -11.19227 -11.02546 -10.90467 -10.73028 -10.50128 -10.19191 -9.95696 -9.41213 -9.27454 -9.12758 -9.10842 -8.46732 -8.17959 -7.32697 -6.06076 -4.07623 0.52558 1.23739 1.37001 1.79991 3.31943 3.35889 3.39056 3.57242 4.03358 4.33172 4.41004 4.55441 4.65604 4.79537 4.90131 4.96690 5.02270 5.08998 5.13401 5.25208 5.30067 5.41406 5.44262 5.64441 5.78822 5.85716 5.92957 6.03602 6.06474 6.15700 6.24740 6.27200 6.33750 6.47468 6.53794 6.71707 6.74818 6.82416 7.20835 7.27516 7.74513 8.00543 8.03147 8.12836 8.47982 8.99525 9.56726 11.04734 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.003621 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.787203 B = 7730.325038 C = 8687.849003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.535 5.535 3 C 0.193 3.807 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.091 3.909 13 C -0.106 4.106 14 C 0.102 3.898 15 N -0.484 5.484 16 C 0.097 3.903 17 C -0.103 4.103 18 C -0.034 4.034 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.048 4.048 25 H 0.013 0.987 26 H 0.076 0.924 27 H 0.045 0.955 28 H -0.007 1.007 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -20.716 1.777 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.259 5.259 3 C 0.068 3.932 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.037 4.037 13 C -0.108 4.108 14 C -0.055 4.055 15 N -0.191 5.191 16 C -0.061 4.061 17 C -0.105 4.105 18 C -0.035 4.035 19 C -0.126 4.126 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.074 4.074 25 H 0.032 0.968 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.011 0.989 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.217 -21.026 1.741 21.133 hybrid contribution 0.354 1.309 -0.520 1.453 sum 1.572 -19.716 1.221 19.817 Atomic orbital electron populations 1.22287 0.88760 0.99661 1.00745 1.62177 1.07197 1.17821 1.38736 1.19759 0.95407 0.81171 0.96824 1.21106 1.34991 0.96951 1.01671 0.91900 1.24979 0.95243 0.97304 0.97016 1.69945 1.38230 1.11545 1.34121 0.86551 0.78744 0.78333 0.83739 1.20253 1.21325 1.20141 1.21003 1.00772 0.88268 0.93693 1.20935 0.95207 0.97273 0.97378 1.22736 0.94376 0.91649 0.96693 1.67634 1.32748 1.03603 1.15103 1.22745 0.90052 0.99182 0.94099 1.19738 0.96260 0.93813 1.00676 1.18679 0.94184 0.92786 0.97863 1.21334 0.93733 1.00179 0.97383 1.21124 0.99771 0.93439 0.99087 1.21214 0.96847 0.96056 0.99977 1.21067 0.94747 0.99531 0.98349 1.21212 0.99878 0.92498 0.99501 1.21563 0.99626 0.91437 0.94759 0.96831 0.90568 0.93605 0.98930 0.95135 0.92822 0.94420 0.90160 0.83038 0.83053 0.85376 0.85765 0.86115 0.85924 0.85708 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.98 60.06 0.54 1.20 16 2 N -0.53 -11.31 4.74 -245.82 -1.17 -12.47 16 3 C 0.19 4.92 4.72 -4.97 -0.02 4.90 16 4 C -0.51 -14.14 8.46 -34.44 -0.29 -14.43 16 5 H 0.06 1.74 7.12 -52.48 -0.37 1.37 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.09 1.58 5.14 -4.97 -0.03 1.55 16 13 C -0.11 -1.63 4.88 -104.53 -0.51 -2.14 16 14 C 0.10 1.52 9.16 -17.50 -0.16 1.36 16 15 N -0.48 -7.15 10.35 -12.97 -0.13 -7.29 16 16 C 0.10 1.27 10.60 -17.19 -0.18 1.09 16 17 C -0.10 -1.36 5.89 -104.75 -0.62 -1.98 16 18 C -0.03 -0.41 5.88 -104.90 -0.62 -1.02 16 19 C -0.11 -1.22 9.44 -39.25 -0.37 -1.59 16 20 C -0.12 -1.13 10.03 -39.63 -0.40 -1.53 16 21 C -0.12 -1.08 10.04 -39.52 -0.40 -1.48 16 22 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 23 C -0.11 -1.13 9.44 -39.25 -0.37 -1.50 16 24 C -0.05 -0.69 9.21 -38.95 -0.36 -1.05 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 1.60 6.76 -51.93 -0.35 1.25 16 27 H 0.05 0.80 6.19 -51.93 -0.32 0.48 16 28 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 29 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.08 1.35 7.88 -51.93 -0.41 0.95 16 33 H 0.15 2.05 8.05 -52.49 -0.42 1.63 16 34 H 0.15 1.55 6.23 -52.49 -0.33 1.22 16 35 H 0.13 1.38 6.28 -52.49 -0.33 1.05 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.02 6.24 -52.49 -0.33 0.69 16 40 H 0.14 1.85 6.33 -52.48 -0.33 1.52 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -30.85 332.41 -10.12 -40.98 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.27 Total: -0.46 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -4.28 Total: -16.59 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.56 Total: -45.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.85 -10.12 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232897476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.457 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds