Wall clock time and date at job start Tue Mar 31 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47440 * 2 1 4 4 N 1.46900 * 109.46938 * 183.06600 * 3 2 1 5 5 C 1.46893 * 111.00386 * 299.70085 * 4 3 2 6 6 C 1.50702 * 109.46828 * 288.55494 * 5 4 3 7 7 H 1.08001 * 120.00010 * 3.89755 * 6 5 4 8 8 C 1.37885 * 119.99967 * 183.89821 * 6 5 4 9 9 N 1.31517 * 119.99758 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99737 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47083 * 90.00437 * 10 8 6 12 12 H 1.48503 * 109.46686 * 210.00098 * 10 8 6 13 13 H 1.48496 * 109.47446 * 329.99559 * 10 8 6 14 14 C 1.46901 * 110.99745 * 63.65684 * 4 3 2 15 15 C 1.50701 * 109.47562 * 76.23498 * 14 4 3 16 16 C 1.38421 * 120.77048 * 96.42941 * 15 14 4 17 17 C 1.38850 * 119.13910 * 179.75793 * 16 15 14 18 18 O 1.35724 * 119.65441 * 180.22959 * 17 16 15 19 19 C 1.42898 * 116.99741 * 180.29604 * 18 17 16 20 20 N 1.32243 * 120.68434 * 0.52288 * 17 16 15 21 21 C 1.31945 * 121.67632 * 359.72334 * 20 17 16 22 22 C 1.38294 * 120.79742 * 0.02562 * 21 20 17 23 23 F 1.35099 * 120.38271 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47399 * 300.00810 * 1 2 3 25 25 H 1.09008 * 109.46567 * 60.00321 * 1 2 3 26 26 H 1.09000 * 109.47541 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47399 * 239.99190 * 2 1 3 28 28 H 1.09004 * 109.46907 * 120.00019 * 2 1 3 29 29 H 1.08997 * 109.47030 * 63.06576 * 3 2 1 30 30 H 1.09000 * 109.46830 * 303.06812 * 3 2 1 31 31 H 1.08995 * 109.47158 * 48.55306 * 5 4 3 32 32 H 1.08995 * 109.47234 * 168.55768 * 5 4 3 33 33 H 0.96998 * 119.99864 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47035 * 196.23300 * 14 4 3 35 35 H 1.09001 * 109.47274 * 316.22785 * 14 4 3 36 36 H 1.07999 * 120.42499 * 359.97438 * 16 15 14 37 37 H 1.09000 * 109.47573 * 59.99960 * 19 18 17 38 38 H 1.09007 * 109.47260 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47446 * 299.99393 * 19 18 17 40 40 H 1.07997 * 119.60040 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5072 1.4430 -0.0741 5 6 4.0927 0.7426 1.0767 6 6 3.9127 1.5781 2.3179 7 1 3.3585 2.5039 2.2701 8 6 4.4556 1.1607 3.5147 9 7 5.1309 0.0336 3.5729 10 14 4.2318 2.1960 5.0534 11 1 2.9918 1.7780 5.7552 12 1 5.3981 2.0047 5.9526 13 1 4.1280 3.6284 4.6755 14 6 3.9706 0.8566 -1.3388 15 6 3.7782 1.8516 -2.4542 16 6 4.8212 2.6621 -2.8679 17 6 4.6077 3.5634 -3.9023 18 8 5.6244 4.3600 -4.3195 19 6 5.3402 5.2709 -5.3832 20 7 3.4225 3.6579 -4.4813 21 6 2.4066 2.9036 -4.1073 22 6 2.5479 1.9804 -3.0873 23 9 1.5020 1.2127 -2.7108 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.7223 1.9402 0.9162 30 1 1.6325 1.9719 -0.8612 31 1 3.5944 -0.2176 1.2097 32 1 5.1557 0.5789 0.9000 33 1 5.5125 -0.2602 4.4148 34 1 5.0276 0.6035 -1.2561 35 1 3.3968 -0.0450 -1.5530 36 1 5.7894 2.5918 -2.3946 37 1 4.5433 5.9490 -5.0778 38 1 6.2360 5.8460 -5.6181 39 1 5.0247 4.7130 -6.2648 40 1 1.4530 3.0089 -4.6031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235317663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:18 Heat of formation + Delta-G solvation = -41.926152 kcal Electronic energy + Delta-G solvation = -22653.184500 eV Core-core repulsion = 19190.238931 eV Total energy + Delta-G solvation = -3462.945569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.81717 -40.57033 -38.14566 -37.24003 -33.38109 -32.82041 -31.45789 -30.29346 -27.81689 -27.11798 -26.24561 -24.31814 -23.34859 -22.15280 -21.80113 -19.42859 -18.04004 -17.49126 -17.32090 -16.36158 -16.16166 -15.69287 -15.22466 -14.77839 -14.61583 -14.45608 -14.15923 -13.66081 -13.49463 -13.32546 -13.07411 -12.91258 -12.47368 -12.16898 -11.93665 -11.62126 -11.24266 -11.18712 -11.09950 -10.93272 -10.86237 -10.72662 -10.47229 -9.94365 -9.89086 -9.74698 -9.47104 -9.20156 -8.42975 -8.34038 -7.25624 -6.02999 -4.03456 1.02973 1.13396 3.01147 3.31980 3.38372 3.42976 3.61446 4.14979 4.25095 4.42922 4.71589 4.92181 5.07580 5.09326 5.18748 5.20355 5.33769 5.43892 5.50747 5.53898 5.60516 5.74823 5.84846 5.88732 5.97533 6.11271 6.22439 6.39518 6.40119 6.46352 6.51079 6.72200 6.94451 7.15630 7.22895 7.36567 7.68718 7.78215 8.04926 8.15641 8.49975 9.03217 9.60245 11.07688 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.004973 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.759825 B = 5628.569336 C = 6769.430925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.160 4.160 3 C 0.058 3.942 4 N -0.526 5.526 5 C 0.189 3.811 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.079 3.921 15 C -0.012 4.012 16 C -0.144 4.144 17 C 0.307 3.693 18 O -0.305 6.305 19 C 0.041 3.959 20 N -0.524 5.524 21 C 0.108 3.892 22 C 0.015 3.985 23 F -0.124 7.124 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.001 0.999 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.152 0.848 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 4.318 -16.325 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C -0.071 4.071 4 N -0.249 5.249 5 C 0.064 3.936 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.049 4.049 15 C -0.021 4.021 16 C -0.166 4.166 17 C 0.129 3.871 18 O -0.212 6.212 19 C -0.055 4.055 20 N -0.247 5.247 21 C -0.049 4.049 22 C -0.007 4.007 23 F -0.103 7.103 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.170 0.830 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.469 5.304 -16.733 17.893 hybrid contribution -0.573 -0.923 1.428 1.795 sum -4.043 4.380 -15.305 16.425 Atomic orbital electron populations 1.21628 0.96380 1.00641 1.01229 1.22121 0.95709 1.00077 1.01964 1.22237 0.87970 0.94899 1.01955 1.62400 1.06976 1.54737 1.00802 1.19869 0.94587 0.92725 0.86396 1.21113 1.33605 1.07124 0.92240 0.91996 1.24955 0.95302 0.95243 0.99008 1.69949 1.36065 1.21547 1.26364 0.86522 0.77525 0.80741 0.82796 1.20779 1.21286 1.19810 1.21115 1.02038 0.92749 0.88989 1.20385 0.90782 0.95963 0.94938 1.20904 1.01693 0.96443 0.97512 1.19795 0.85990 0.90119 0.91235 1.86266 1.33209 1.49347 1.52380 1.22842 1.02312 0.91782 0.88524 1.67269 0.99822 1.26776 1.30867 1.22319 0.97532 0.91051 0.93984 1.18439 0.85602 0.96762 0.99914 1.91490 1.55129 1.73390 1.90279 0.92942 0.93260 0.93660 0.92806 0.90835 0.90370 0.92210 0.98098 0.95116 0.92954 0.89471 0.92896 0.83045 0.92324 0.88717 0.92429 0.81658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.16 -2.85 4.77 -26.73 -0.13 -2.97 16 3 C 0.06 1.11 4.67 -3.82 -0.02 1.09 16 4 N -0.53 -11.01 4.58 -237.52 -1.09 -12.10 16 5 C 0.19 4.72 4.56 -4.98 -0.02 4.70 16 6 C -0.50 -13.85 8.64 -34.44 -0.30 -14.15 16 7 H 0.06 1.72 7.34 -52.49 -0.39 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.08 1.38 4.93 -4.97 -0.02 1.36 16 15 C -0.01 -0.18 5.30 -104.29 -0.55 -0.74 16 16 C -0.14 -2.15 9.72 -39.29 -0.38 -2.53 16 17 C 0.31 4.41 7.49 -17.15 -0.13 4.28 16 18 O -0.31 -4.03 10.48 -18.88 -0.20 -4.22 16 19 C 0.04 0.39 10.38 101.05 1.05 1.44 16 20 N -0.52 -7.19 9.21 -13.28 -0.12 -7.31 16 21 C 0.11 1.38 11.16 -17.48 -0.20 1.18 16 22 C 0.02 0.22 6.37 -39.29 -0.25 -0.03 16 23 F -0.12 -1.83 13.48 2.25 0.03 -1.80 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.92 5.69 -51.93 -0.30 0.63 16 28 H 0.07 1.50 6.34 -51.93 -0.33 1.18 16 29 H 0.08 1.65 7.16 -51.93 -0.37 1.28 16 30 H 0.06 1.07 4.93 -51.93 -0.26 0.82 16 31 H 0.00 0.04 5.84 -51.93 -0.30 -0.27 16 32 H 0.03 0.82 7.69 -51.93 -0.40 0.42 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.09 1.49 7.57 -51.93 -0.39 1.09 16 35 H 0.05 0.90 5.53 -51.93 -0.29 0.62 16 36 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 38 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -29.89 326.54 -6.95 -36.84 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.53 Total: -0.70 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.68 Total: -6.64 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.47 Total: -44.96 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.89 -6.95 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235317663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.084 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds