Wall clock time and date at job start Tue Mar 31 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00179 * 2 1 4 4 C 1.50700 * 109.46853 * 66.04826 * 3 2 1 5 5 C 1.38646 * 120.79293 * 90.00309 * 4 3 2 6 6 C 1.38200 * 119.16334 * 179.97438 * 5 4 3 7 7 N 1.31868 * 120.76433 * 0.02562 * 6 5 4 8 8 C 1.31867 * 121.72738 * 359.96277 * 7 6 5 9 9 C 1.38201 * 120.76417 * 0.04171 * 8 7 6 10 10 C 1.46903 * 110.99839 * 236.04738 * 2 1 3 11 11 C 1.50707 * 109.47149 * 287.72721 * 10 2 1 12 12 C 1.37641 * 120.12268 * 104.11897 * 11 10 2 13 13 C 1.38619 * 120.24415 * 180.02562 * 12 11 10 14 14 C 1.38654 * 120.50113 * 359.97438 * 13 12 11 15 15 C 1.37603 * 120.25077 * 0.02562 * 14 13 12 16 16 C 1.40695 * 120.12675 * 283.84886 * 11 10 2 17 17 C 1.41385 * 120.24623 * 359.97438 * 16 11 10 18 18 H 1.08004 * 120.00330 * 28.13144 * 17 16 11 19 19 C 1.39949 * 120.00074 * 208.13597 * 17 16 11 20 20 N 1.30819 * 119.99670 * 13.83634 * 19 17 16 21 21 Si 1.86801 * 120.00343 * 193.83117 * 19 17 16 22 22 H 1.48496 * 109.47247 * 89.99870 * 21 19 17 23 23 H 1.48493 * 109.47283 * 210.00197 * 21 19 17 24 24 H 1.48500 * 109.47078 * 330.00188 * 21 19 17 25 25 H 1.08995 * 109.46859 * 54.93646 * 1 2 3 26 26 H 1.08997 * 109.46961 * 174.93021 * 1 2 3 27 27 H 1.08998 * 109.46794 * 294.93224 * 1 2 3 28 28 H 1.09003 * 109.47063 * 306.04681 * 3 2 1 29 29 H 1.09003 * 109.46872 * 186.04644 * 3 2 1 30 30 H 1.08000 * 120.41397 * 359.69596 * 5 4 3 31 31 H 1.08007 * 119.61728 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.61764 * 180.02562 * 8 7 6 33 33 H 1.07994 * 120.42194 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.47354 * 47.72976 * 10 2 1 35 35 H 1.09002 * 109.47358 * 167.73304 * 10 2 1 36 36 H 1.08000 * 119.87795 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.74633 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.87817 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.13082 * 179.97438 * 15 14 13 40 40 H 0.97005 * 119.99716 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 6 2.4844 1.9752 2.3935 6 6 2.1225 2.6079 3.5677 7 7 0.9870 3.2729 3.6533 8 6 0.1571 3.3625 2.6324 9 6 0.4520 2.7554 1.4264 10 6 1.9955 -0.7660 -1.1376 11 6 1.7716 -2.2372 -0.8994 12 6 0.7679 -2.9003 -1.5682 13 6 0.5594 -4.2534 -1.3506 14 6 1.3575 -4.9540 -0.4592 15 6 2.3668 -4.3114 0.2205 16 6 2.5913 -2.9391 0.0032 17 6 3.6294 -2.2697 0.6912 18 1 3.5437 -1.2142 0.9033 19 6 4.7680 -2.9748 1.0973 20 7 5.0040 -4.1685 0.6170 21 14 5.9510 -2.2113 2.3250 22 1 5.5375 -2.5763 3.7037 23 1 7.3238 -2.7168 2.0697 24 1 5.9322 -0.7338 2.1774 25 1 -0.3633 0.5904 -0.8411 26 1 -0.3633 -1.0236 -0.0908 27 1 -0.3633 0.4332 0.9319 28 1 1.5612 1.9274 -0.8309 29 1 3.0798 1.3443 -0.1083 30 1 3.4133 1.4279 2.3311 31 1 2.7769 2.5563 4.4254 32 1 -0.7638 3.9164 2.7402 33 1 -0.2318 2.8320 0.5941 34 1 1.4803 -0.4630 -2.0492 35 1 3.0632 -0.5734 -1.2425 36 1 0.1405 -2.3645 -2.2651 37 1 -0.2307 -4.7656 -1.8794 38 1 1.1865 -6.0080 -0.2976 39 1 2.9871 -4.8589 0.9146 40 1 5.7934 -4.6571 0.8982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235510311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:08 Heat of formation + Delta-G solvation = 57.673677 kcal Electronic energy + Delta-G solvation = -21638.587418 eV Core-core repulsion = 18610.730046 eV Total energy + Delta-G solvation = -3027.857372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.07726 -38.10847 -36.43504 -33.57825 -32.81034 -31.09725 -30.25375 -29.39958 -27.24940 -26.20829 -24.96365 -23.29167 -22.66128 -21.00143 -20.85456 -19.40151 -17.11144 -16.49695 -16.25175 -15.57211 -15.28467 -15.19843 -14.64403 -14.51284 -13.96031 -13.61746 -13.53538 -13.23452 -13.15122 -12.57522 -12.24453 -11.84935 -11.63255 -11.56672 -11.33527 -11.19495 -11.11455 -11.04641 -10.81182 -10.53142 -10.34418 -9.52278 -9.50135 -9.39110 -9.24581 -9.16141 -9.00831 -7.76456 -7.34391 -7.25919 -6.68816 -4.29336 1.26265 1.37795 2.80236 2.97418 3.09722 3.11193 3.26892 3.91053 3.96786 4.54744 4.57727 4.73534 4.83928 4.89632 5.21264 5.29947 5.49496 5.63607 5.75126 5.76168 5.77643 5.87818 5.93562 6.02168 6.13338 6.18706 6.27412 6.38586 6.48861 6.50295 6.54975 6.82998 6.84418 7.14397 7.29193 7.39924 7.54272 7.58468 7.70078 7.95339 8.06988 8.10411 8.17782 8.35774 8.71600 8.98291 9.04976 10.26523 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.006400 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.966694 B = 4374.208962 C = 5921.538783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.518 5.518 3 C 0.088 3.912 4 C -0.022 4.022 5 C -0.148 4.148 6 C 0.094 3.906 7 N -0.493 5.493 8 C 0.090 3.910 9 C -0.169 4.169 10 C 0.127 3.873 11 C -0.192 4.192 12 C -0.088 4.088 13 C -0.243 4.243 14 C -0.108 4.108 15 C -0.160 4.160 16 C 0.133 3.867 17 C -0.446 4.446 18 H 0.090 0.910 19 C 0.072 3.928 20 N -0.801 5.801 21 Si 0.904 3.096 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.262 1.262 25 H 0.014 0.986 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.018 0.982 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 10.436 0.601 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.242 5.242 3 C -0.040 4.040 4 C -0.030 4.030 5 C -0.168 4.168 6 C -0.063 4.063 7 N -0.203 5.203 8 C -0.066 4.066 9 C -0.189 4.189 10 C 0.001 3.999 11 C -0.194 4.194 12 C -0.107 4.107 13 C -0.263 4.263 14 C -0.126 4.126 15 C -0.179 4.179 16 C 0.130 3.870 17 C -0.476 4.476 18 H 0.108 0.892 19 C -0.144 4.144 20 N -0.427 5.427 21 Si 0.729 3.271 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.186 1.186 25 H 0.032 0.968 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.870 10.436 1.804 11.275 hybrid contribution 0.483 0.005 -1.018 1.127 sum -3.387 10.440 0.786 11.004 Atomic orbital electron populations 1.22389 0.88151 1.02327 0.99236 1.62017 1.07228 1.09822 1.45125 1.21124 1.01140 0.89655 0.92055 1.20271 0.93270 0.93405 0.96100 1.22124 1.01531 0.99679 0.93469 1.22725 0.93278 0.93175 0.97106 1.67624 1.03990 1.17152 1.31495 1.22625 0.98223 0.97047 0.88745 1.22033 0.97632 0.99777 0.99498 1.20655 0.99244 0.91595 0.88382 1.19450 1.02746 0.93483 1.03695 1.20369 0.97050 0.94319 0.98931 1.20299 1.04366 0.94744 1.06879 1.20682 0.96719 0.97366 0.97864 1.21346 0.98237 0.95977 1.02357 1.17363 0.90217 0.91244 0.88208 1.19709 0.99962 0.97417 1.30512 0.89218 1.25954 0.98836 0.94500 0.95153 1.69823 1.25456 1.11797 1.35668 0.86387 0.78974 0.80453 0.81318 1.19439 1.20626 1.18612 0.96763 0.90639 0.92319 0.94361 0.89494 0.84445 0.82986 0.83260 0.85390 0.96420 0.90658 0.89989 0.89846 0.89729 0.86708 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 8.92 60.07 0.54 0.98 16 2 N -0.52 -9.13 4.14 -245.81 -1.02 -10.14 16 3 C 0.09 1.29 5.15 -4.98 -0.03 1.26 16 4 C -0.02 -0.31 4.90 -104.32 -0.51 -0.82 16 5 C -0.15 -2.11 9.82 -39.44 -0.39 -2.50 16 6 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 7 N -0.49 -7.05 10.36 -13.25 -0.14 -7.19 16 8 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 9 C -0.17 -2.11 8.26 -39.44 -0.33 -2.44 16 10 C 0.13 2.45 4.30 -4.97 -0.02 2.43 16 11 C -0.19 -4.37 4.77 -103.91 -0.50 -4.87 16 12 C -0.09 -1.92 8.86 -39.66 -0.35 -2.27 16 13 C -0.24 -5.44 10.05 -39.29 -0.39 -5.83 16 14 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 15 C -0.16 -4.12 8.66 -38.87 -0.34 -4.46 16 16 C 0.13 3.38 5.54 -106.83 -0.59 2.79 16 17 C -0.45 -11.21 8.17 -37.74 -0.31 -11.52 16 18 H 0.09 2.18 6.76 -52.48 -0.35 1.82 16 19 C 0.07 1.76 5.19 -17.34 -0.09 1.67 16 20 N -0.80 -20.45 10.99 55.55 0.61 -19.84 16 21 Si 0.90 18.41 29.58 -169.99 -5.03 13.38 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H 0.01 0.20 8.08 -51.93 -0.42 -0.22 16 26 H 0.07 1.36 6.67 -51.93 -0.35 1.01 16 27 H 0.06 0.91 6.52 -51.93 -0.34 0.57 16 28 H 0.04 0.50 8.03 -51.93 -0.42 0.09 16 29 H 0.09 1.27 7.82 -51.93 -0.41 0.86 16 30 H 0.14 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.02 0.31 7.86 -51.93 -0.41 -0.09 16 35 H 0.08 1.50 7.25 -51.93 -0.38 1.13 16 36 H 0.08 1.59 8.00 -52.49 -0.42 1.17 16 37 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.12 3.08 6.31 -52.49 -0.33 2.75 16 40 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -27.62 331.32 -10.16 -37.78 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.49 Total: 7.51 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -4.09 Total: -26.50 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.54 Total: -37.17 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.62 -10.16 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235510311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.454 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds