Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00179 * 2 1 4 4 C 1.50700 * 109.46853 * 66.04826 * 3 2 1 5 5 C 1.38646 * 120.79293 * 90.00309 * 4 3 2 6 6 C 1.38200 * 119.16334 * 179.97438 * 5 4 3 7 7 N 1.31868 * 120.76433 * 0.02562 * 6 5 4 8 8 C 1.31867 * 121.72738 * 359.96277 * 7 6 5 9 9 C 1.38201 * 120.76417 * 0.04171 * 8 7 6 10 10 C 1.46903 * 110.99839 * 236.04738 * 2 1 3 11 11 C 1.50707 * 109.47149 * 287.72721 * 10 2 1 12 12 C 1.37641 * 120.12268 * 104.11897 * 11 10 2 13 13 C 1.38619 * 120.24415 * 180.02562 * 12 11 10 14 14 C 1.38654 * 120.50113 * 359.97438 * 13 12 11 15 15 C 1.37603 * 120.25077 * 0.02562 * 14 13 12 16 16 C 1.40695 * 120.12675 * 283.84886 * 11 10 2 17 17 C 1.41385 * 120.24623 * 359.97438 * 16 11 10 18 18 H 1.08004 * 120.00330 * 28.13144 * 17 16 11 19 19 C 1.39949 * 120.00074 * 208.13597 * 17 16 11 20 20 N 1.30819 * 119.99670 * 13.83634 * 19 17 16 21 21 Si 1.86801 * 120.00343 * 193.83117 * 19 17 16 22 22 H 1.48496 * 109.47247 * 89.99870 * 21 19 17 23 23 H 1.48493 * 109.47283 * 210.00197 * 21 19 17 24 24 H 1.48500 * 109.47078 * 330.00188 * 21 19 17 25 25 H 1.08995 * 109.46859 * 54.93646 * 1 2 3 26 26 H 1.08997 * 109.46961 * 174.93021 * 1 2 3 27 27 H 1.08998 * 109.46794 * 294.93224 * 1 2 3 28 28 H 1.09003 * 109.47063 * 306.04681 * 3 2 1 29 29 H 1.09003 * 109.46872 * 186.04644 * 3 2 1 30 30 H 1.08000 * 120.41397 * 359.69596 * 5 4 3 31 31 H 1.08007 * 119.61728 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.61764 * 180.02562 * 8 7 6 33 33 H 1.07994 * 120.42194 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.47354 * 47.72976 * 10 2 1 35 35 H 1.09002 * 109.47358 * 167.73304 * 10 2 1 36 36 H 1.08000 * 119.87795 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.74633 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.87817 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.13082 * 179.97438 * 15 14 13 40 40 H 0.97005 * 119.99716 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 6 2.4844 1.9752 2.3935 6 6 2.1225 2.6079 3.5677 7 7 0.9870 3.2729 3.6533 8 6 0.1571 3.3625 2.6324 9 6 0.4520 2.7554 1.4264 10 6 1.9955 -0.7660 -1.1376 11 6 1.7716 -2.2372 -0.8994 12 6 0.7679 -2.9003 -1.5682 13 6 0.5594 -4.2534 -1.3506 14 6 1.3575 -4.9540 -0.4592 15 6 2.3668 -4.3114 0.2205 16 6 2.5913 -2.9391 0.0032 17 6 3.6294 -2.2697 0.6912 18 1 3.5437 -1.2142 0.9033 19 6 4.7680 -2.9748 1.0973 20 7 5.0040 -4.1685 0.6170 21 14 5.9510 -2.2113 2.3250 22 1 5.5375 -2.5763 3.7037 23 1 7.3238 -2.7168 2.0697 24 1 5.9322 -0.7338 2.1774 25 1 -0.3633 0.5904 -0.8411 26 1 -0.3633 -1.0236 -0.0908 27 1 -0.3633 0.4332 0.9319 28 1 1.5612 1.9274 -0.8309 29 1 3.0798 1.3443 -0.1083 30 1 3.4133 1.4279 2.3311 31 1 2.7769 2.5563 4.4254 32 1 -0.7638 3.9164 2.7402 33 1 -0.2318 2.8320 0.5941 34 1 1.4803 -0.4630 -2.0492 35 1 3.0632 -0.5734 -1.2425 36 1 0.1405 -2.3645 -2.2651 37 1 -0.2307 -4.7656 -1.8794 38 1 1.1865 -6.0080 -0.2976 39 1 2.9871 -4.8589 0.9146 40 1 5.7934 -4.6571 0.8982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235510311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = 43.793919 kcal Electronic energy + Delta-G solvation = -21639.189290 eV Core-core repulsion = 18610.730046 eV Total energy + Delta-G solvation = -3028.459243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11126 -39.74582 -37.86674 -35.40774 -34.01971 -32.11886 -31.85345 -31.20543 -28.44301 -27.79086 -26.67457 -24.31753 -23.95830 -22.74349 -22.13720 -21.09302 -18.94820 -17.57685 -17.33795 -17.09107 -16.54831 -16.45905 -16.24046 -15.95979 -15.55110 -14.98054 -14.67364 -14.56456 -14.45020 -14.31167 -13.46407 -13.35160 -13.23384 -12.95433 -12.89946 -12.74044 -12.60541 -12.45951 -12.25967 -12.14071 -12.01597 -11.28627 -11.10498 -10.99151 -10.54124 -10.39339 -10.00361 -9.20172 -9.13467 -8.99293 -8.51185 -6.19236 0.27104 0.32672 1.04447 1.17407 1.40906 1.51868 1.57175 2.25622 2.81317 2.89874 3.34876 3.63383 3.75896 3.87470 3.95131 4.23906 4.27785 4.33236 4.36757 4.48243 4.54600 4.56864 4.68857 4.71700 4.79024 4.81753 4.91508 4.96944 5.09703 5.11547 5.16900 5.30521 5.43381 5.50171 5.59170 5.83656 5.85140 6.05405 6.19507 6.27303 6.33849 6.35999 6.53076 6.84719 7.07226 7.11883 7.19255 8.45953 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.006400 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.966694 B = 4374.208962 C = 5921.538783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.538 5.538 3 C 0.093 3.907 4 C -0.034 4.034 5 C -0.164 4.164 6 C 0.086 3.914 7 N -0.513 5.513 8 C 0.088 3.912 9 C -0.164 4.164 10 C 0.136 3.864 11 C -0.192 4.192 12 C -0.091 4.091 13 C -0.244 4.244 14 C -0.118 4.118 15 C -0.192 4.192 16 C 0.102 3.898 17 C -0.466 4.466 18 H 0.091 0.909 19 C 0.031 3.969 20 N -0.837 5.837 21 Si 0.968 3.032 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.250 1.250 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.169 0.831 32 H 0.180 0.820 33 H 0.152 0.848 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 12.354 0.073 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.262 5.262 3 C -0.034 4.034 4 C -0.043 4.043 5 C -0.185 4.185 6 C -0.070 4.070 7 N -0.223 5.223 8 C -0.069 4.069 9 C -0.184 4.184 10 C 0.009 3.991 11 C -0.194 4.194 12 C -0.110 4.110 13 C -0.263 4.263 14 C -0.136 4.136 15 C -0.212 4.212 16 C 0.099 3.901 17 C -0.496 4.496 18 H 0.109 0.891 19 C -0.182 4.182 20 N -0.465 5.465 21 Si 0.790 3.210 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.173 1.173 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.186 0.814 32 H 0.197 0.803 33 H 0.170 0.830 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.214 12.363 1.271 13.478 hybrid contribution 0.766 -0.588 -0.918 1.332 sum -4.448 11.775 0.353 12.593 Atomic orbital electron populations 1.22319 0.87164 1.01427 1.00552 1.61833 1.08245 1.11625 1.44536 1.21092 1.00841 0.88282 0.93213 1.20330 0.94135 0.94100 0.95714 1.22191 1.01725 1.00364 0.94182 1.22997 0.93564 0.92918 0.97493 1.67680 1.04450 1.17670 1.32477 1.23163 0.98802 0.96624 0.88284 1.22257 0.97137 0.98757 1.00258 1.20485 0.98881 0.89856 0.89840 1.19871 1.01824 0.95443 1.02281 1.20726 0.96936 0.94386 0.98955 1.20678 1.04342 0.95219 1.06061 1.20925 0.96397 0.98369 0.97937 1.21316 0.99555 0.96708 1.03622 1.17724 0.91344 0.91555 0.89443 1.19869 1.00549 0.97593 1.31621 0.89088 1.26717 1.00300 0.94816 0.96399 1.69905 1.26297 1.13192 1.37077 0.85406 0.76825 0.80213 0.78578 1.19570 1.20149 1.17293 0.94263 0.92834 0.91803 0.92180 0.90163 0.85136 0.81362 0.80301 0.83009 0.94439 0.91953 0.86904 0.87052 0.88176 0.89017 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 8.92 127.69 1.14 2.13 16 2 N -0.54 -18.12 4.14 -931.62 -3.85 -21.97 16 3 C 0.09 2.54 5.15 85.56 0.44 2.98 16 4 C -0.03 -0.90 4.90 -19.67 -0.10 -1.00 16 5 C -0.16 -4.57 9.82 22.36 0.22 -4.35 16 6 C 0.09 2.26 11.18 84.68 0.95 3.21 16 7 N -0.51 -13.74 10.36 -195.84 -2.03 -15.77 16 8 C 0.09 1.95 11.18 84.68 0.95 2.90 16 9 C -0.16 -3.62 8.26 22.36 0.18 -3.43 16 10 C 0.14 5.07 4.30 85.56 0.37 5.44 16 11 C -0.19 -8.67 4.77 -19.40 -0.09 -8.77 16 12 C -0.09 -3.82 8.86 22.22 0.20 -3.63 16 13 C -0.24 -10.51 10.05 22.46 0.23 -10.28 16 14 C -0.12 -5.59 10.02 22.22 0.22 -5.36 16 15 C -0.19 -10.26 8.66 22.73 0.20 -10.07 16 16 C 0.10 5.32 5.54 -21.29 -0.12 5.20 16 17 C -0.47 -24.04 8.17 23.46 0.19 -23.85 16 18 H 0.09 4.51 6.76 -2.91 -0.02 4.49 16 19 C 0.03 1.53 5.19 85.26 0.44 1.98 16 20 N -0.84 -44.37 10.99 21.83 0.24 -44.13 16 21 Si 0.97 38.43 29.58 68.60 2.03 40.46 16 22 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 23 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 25 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 26 H 0.05 1.82 6.67 -2.39 -0.02 1.80 16 27 H 0.06 1.81 6.52 -2.39 -0.02 1.80 16 28 H 0.06 1.38 8.03 -2.39 -0.02 1.36 16 29 H 0.08 2.28 7.82 -2.39 -0.02 2.26 16 30 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.04 1.23 7.86 -2.39 -0.02 1.22 16 35 H 0.06 2.47 7.25 -2.39 -0.02 2.45 16 36 H 0.11 3.99 8.00 -2.91 -0.02 3.96 16 37 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.09 5.21 6.31 -2.91 -0.02 5.19 16 40 H 0.28 13.71 8.30 -92.70 -0.77 12.94 16 Total: -1.00 -60.33 331.32 2.83 -57.50 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 1.02 Total: 30.81 kcal Atomic # 6 Polarization: -52.32 SS G_CDS: 5.42 Total: -46.90 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -5.64 Total: -81.87 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -60.33 2.83 -57.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235510311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.294 kcal (2) G-P(sol) polarization free energy of solvation -60.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds