Wall clock time and date at job start Tue Mar 31 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00087 * 2 1 4 4 C 1.50698 * 109.46874 * 293.95454 * 3 2 1 5 5 C 1.38673 * 120.42301 * 89.99804 * 4 3 2 6 6 C 1.38630 * 118.41912 * 179.97438 * 5 4 3 7 7 C 1.38221 * 119.16232 * 0.25429 * 6 5 4 8 8 N 1.31853 * 120.76368 * 359.49816 * 7 6 5 9 9 C 1.31883 * 121.72456 * 0.49115 * 8 7 6 10 10 C 1.46903 * 110.99839 * 123.95162 * 2 1 3 11 11 C 1.50691 * 109.47326 * 66.04618 * 10 2 1 12 12 C 1.37639 * 120.13019 * 260.00288 * 11 10 2 13 13 C 1.38617 * 120.24662 * 180.02562 * 12 11 10 14 14 C 1.38647 * 120.50277 * 359.97438 * 13 12 11 15 15 C 1.37600 * 120.25109 * 0.02562 * 14 13 12 16 16 C 1.40702 * 120.12567 * 79.72599 * 11 10 2 17 17 C 1.41394 * 120.24314 * 359.97438 * 16 11 10 18 18 H 1.08000 * 120.00334 * 333.96298 * 17 16 11 19 19 C 1.39943 * 119.99610 * 153.96226 * 17 16 11 20 20 N 1.30815 * 120.00517 * 343.66933 * 19 17 16 21 21 Si 1.86807 * 119.99610 * 163.67259 * 19 17 16 22 22 H 1.48493 * 109.47392 * 60.00004 * 21 19 17 23 23 H 1.48500 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47016 * 299.99621 * 21 19 17 25 25 H 1.08998 * 109.46927 * 60.00389 * 1 2 3 26 26 H 1.09006 * 109.46994 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47501 * 300.00572 * 1 2 3 28 28 H 1.08990 * 109.47101 * 173.94909 * 3 2 1 29 29 H 1.09000 * 109.46853 * 53.94949 * 3 2 1 30 30 H 1.08001 * 120.78647 * 359.95905 * 5 4 3 31 31 H 1.07998 * 120.41366 * 179.97438 * 6 5 4 32 32 H 1.08006 * 119.61536 * 179.74831 * 7 6 5 33 33 H 1.08006 * 119.61428 * 179.75175 * 9 8 7 34 34 H 1.09004 * 109.47212 * 186.05358 * 10 2 1 35 35 H 1.09010 * 109.46894 * 306.04500 * 10 2 1 36 36 H 1.07997 * 119.87497 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.74365 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.87627 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.12939 * 179.97438 * 15 14 13 40 40 H 0.96999 * 120.00395 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.4496 2.7536 -1.4180 6 6 0.1616 3.3593 -2.6312 7 6 1.0585 3.2354 -3.6756 8 7 2.1805 2.5596 -3.5244 9 6 2.4874 1.9709 -2.3849 10 6 1.9954 -0.7660 1.1376 11 6 1.6369 -2.2203 0.9730 12 6 0.5682 -2.7505 1.6596 13 6 0.2367 -4.0881 1.5103 14 6 0.9750 -4.9066 0.6694 15 6 2.0475 -4.3981 -0.0268 16 6 2.3898 -3.0402 0.1124 17 6 3.4858 -2.5050 -0.6029 18 1 3.5136 -1.4517 -0.8398 19 6 4.5346 -3.3403 -1.0038 20 7 4.6731 -4.5227 -0.4615 21 14 5.7369 -2.7668 -2.3135 22 1 6.4188 -1.5309 -1.8523 23 1 6.7472 -3.8276 -2.5565 24 1 5.0008 -2.4858 -3.5722 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.0796 1.3444 0.1083 29 1 1.5610 1.9274 0.8309 30 1 -0.2345 2.8298 -0.5857 31 1 -0.7542 3.9171 -2.7600 32 1 0.8395 3.7009 -4.6253 33 1 3.4140 1.4226 -2.2999 34 1 3.0797 -0.6610 1.1758 35 1 1.5610 -0.3871 2.0629 36 1 -0.0136 -2.1221 2.3176 37 1 -0.6033 -4.4957 2.0533 38 1 0.7075 -5.9473 0.5604 39 1 2.6215 -5.0376 -0.6810 40 1 5.4003 -5.1015 -0.7391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:03 Heat of formation + Delta-G solvation = 58.216240 kcal Electronic energy + Delta-G solvation = -21593.548499 eV Core-core repulsion = 18565.714654 eV Total energy + Delta-G solvation = -3027.833844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11171 -38.10087 -36.36408 -33.58240 -32.64501 -31.66365 -30.10395 -29.34839 -27.06942 -26.10472 -24.92354 -23.40507 -22.65238 -20.96888 -20.83450 -19.36473 -17.09399 -16.95993 -16.27866 -15.53856 -15.22164 -15.14279 -14.56216 -14.41870 -13.93690 -13.53741 -13.27261 -13.24389 -12.99584 -12.70026 -12.53003 -11.92593 -11.60457 -11.56636 -11.29086 -11.17587 -11.05703 -11.00066 -10.80096 -10.52296 -10.32930 -9.70759 -9.48574 -9.37022 -9.25117 -9.10301 -8.88382 -7.74481 -7.31713 -7.27358 -6.68915 -4.27231 1.21484 1.36632 2.83741 2.99482 3.11902 3.15894 3.31329 3.89297 3.99596 4.53881 4.63121 4.75986 4.86743 4.94438 5.08635 5.12912 5.42596 5.61346 5.77324 5.79834 5.80386 5.90071 5.95098 6.06169 6.15747 6.19428 6.28684 6.39244 6.43516 6.51306 6.55964 6.81216 6.87178 7.15591 7.31205 7.42305 7.57565 7.61598 7.71550 7.97375 8.09842 8.12682 8.18416 8.36976 8.72474 8.99394 9.06249 10.25460 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.006234 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.192559 B = 4490.098046 C = 6031.059369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.521 5.521 3 C 0.094 3.906 4 C -0.116 4.116 5 C -0.072 4.072 6 C -0.178 4.178 7 C 0.089 3.911 8 N -0.487 5.487 9 C 0.121 3.879 10 C 0.127 3.873 11 C -0.196 4.196 12 C -0.085 4.085 13 C -0.247 4.247 14 C -0.106 4.106 15 C -0.163 4.163 16 C 0.132 3.868 17 C -0.445 4.445 18 H 0.089 0.911 19 C 0.074 3.926 20 N -0.797 5.797 21 Si 0.902 3.098 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.263 1.263 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.013 0.987 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.077 0.923 35 H 0.016 0.984 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 11.810 -1.212 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.244 5.244 3 C -0.035 4.035 4 C -0.118 4.118 5 C -0.099 4.099 6 C -0.198 4.198 7 C -0.068 4.068 8 N -0.195 5.195 9 C -0.036 4.036 10 C 0.001 3.999 11 C -0.198 4.198 12 C -0.104 4.104 13 C -0.266 4.266 14 C -0.125 4.125 15 C -0.183 4.183 16 C 0.129 3.871 17 C -0.475 4.475 18 H 0.107 0.893 19 C -0.143 4.143 20 N -0.423 5.423 21 Si 0.727 3.273 22 H -0.190 1.190 23 H -0.206 1.206 24 H -0.187 1.187 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.131 11.315 -2.335 12.269 hybrid contribution -0.447 0.475 0.891 1.104 sum -4.579 11.790 -1.444 12.730 Atomic orbital electron populations 1.22379 0.88245 1.02753 0.98707 1.62051 1.07301 1.10003 1.45050 1.21000 1.01010 0.89516 0.91937 1.20861 0.95386 0.97762 0.97821 1.21489 0.95828 0.94938 0.97655 1.22051 1.01201 1.02080 0.94465 1.22696 0.89880 0.95694 0.98567 1.67715 1.18691 1.08035 1.25092 1.22739 0.99342 0.94282 0.87267 1.20662 0.99560 0.91364 0.88328 1.19410 1.01931 0.94003 1.04413 1.20353 0.96472 0.94676 0.98927 1.20279 1.03899 0.94626 1.07840 1.20672 0.96571 0.97187 0.98087 1.21358 0.97383 0.96886 1.02640 1.17363 0.90656 0.90904 0.88209 1.19673 1.01638 0.96591 1.29570 0.89293 1.25957 0.98539 0.94347 0.95473 1.69821 1.28551 1.08724 1.35174 0.86459 0.79616 0.79223 0.81988 1.18993 1.20628 1.18733 0.92551 0.90425 0.96880 0.89596 0.94555 0.85402 0.85241 0.83253 0.82516 0.90441 0.96628 0.90072 0.89910 0.89772 0.86589 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 8.93 60.06 0.54 0.99 16 2 N -0.52 -9.22 4.46 -245.82 -1.10 -10.31 16 3 C 0.09 1.36 5.14 -4.97 -0.03 1.33 16 4 C -0.12 -1.63 4.89 -104.48 -0.51 -2.14 16 5 C -0.07 -0.88 8.15 -39.28 -0.32 -1.20 16 6 C -0.18 -1.97 10.11 -39.44 -0.40 -2.37 16 7 C 0.09 1.10 11.18 -17.55 -0.20 0.90 16 8 N -0.49 -7.43 10.36 -13.25 -0.14 -7.57 16 9 C 0.12 1.84 10.86 -17.55 -0.19 1.65 16 10 C 0.13 2.47 4.28 -4.98 -0.02 2.45 16 11 C -0.20 -4.49 4.64 -103.92 -0.48 -4.98 16 12 C -0.09 -1.88 8.60 -39.66 -0.34 -2.22 16 13 C -0.25 -5.55 10.05 -39.29 -0.39 -5.95 16 14 C -0.11 -2.53 10.02 -39.66 -0.40 -2.93 16 15 C -0.16 -4.24 8.69 -38.87 -0.34 -4.58 16 16 C 0.13 3.39 5.56 -106.82 -0.59 2.79 16 17 C -0.45 -11.33 8.18 -37.74 -0.31 -11.64 16 18 H 0.09 2.19 6.84 -52.49 -0.36 1.83 16 19 C 0.07 1.83 5.16 -17.35 -0.09 1.74 16 20 N -0.80 -20.45 10.95 55.55 0.61 -19.84 16 21 Si 0.90 18.81 29.59 -169.99 -5.03 13.78 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 25 H 0.06 0.87 6.18 -51.93 -0.32 0.54 16 26 H 0.08 1.44 6.42 -51.93 -0.33 1.11 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 1.22 7.88 -51.93 -0.41 0.81 16 29 H 0.04 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.16 2.35 8.06 -52.48 -0.42 1.93 16 34 H 0.08 1.56 7.15 -51.93 -0.37 1.19 16 35 H 0.02 0.28 7.98 -51.92 -0.41 -0.13 16 36 H 0.08 1.59 8.03 -52.49 -0.42 1.17 16 37 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.08 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.12 3.13 6.20 -52.49 -0.33 2.80 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -27.92 330.69 -10.21 -38.14 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.47 Total: 6.95 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -4.07 Total: -26.14 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.62 Total: -37.72 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.92 -10.21 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.352 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds