Wall clock time and date at job start Tue Mar 31 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00087 * 2 1 4 4 C 1.50698 * 109.46874 * 293.95454 * 3 2 1 5 5 C 1.38673 * 120.42301 * 89.99804 * 4 3 2 6 6 C 1.38630 * 118.41912 * 179.97438 * 5 4 3 7 7 C 1.38221 * 119.16232 * 0.25429 * 6 5 4 8 8 N 1.31853 * 120.76368 * 359.49816 * 7 6 5 9 9 C 1.31883 * 121.72456 * 0.49115 * 8 7 6 10 10 C 1.46903 * 110.99839 * 123.95162 * 2 1 3 11 11 C 1.50691 * 109.47326 * 66.04618 * 10 2 1 12 12 C 1.37639 * 120.13019 * 260.00288 * 11 10 2 13 13 C 1.38617 * 120.24662 * 180.02562 * 12 11 10 14 14 C 1.38647 * 120.50277 * 359.97438 * 13 12 11 15 15 C 1.37600 * 120.25109 * 0.02562 * 14 13 12 16 16 C 1.40702 * 120.12567 * 79.72599 * 11 10 2 17 17 C 1.41394 * 120.24314 * 359.97438 * 16 11 10 18 18 H 1.08000 * 120.00334 * 333.96298 * 17 16 11 19 19 C 1.39943 * 119.99610 * 153.96226 * 17 16 11 20 20 N 1.30815 * 120.00517 * 343.66933 * 19 17 16 21 21 Si 1.86807 * 119.99610 * 163.67259 * 19 17 16 22 22 H 1.48493 * 109.47392 * 60.00004 * 21 19 17 23 23 H 1.48500 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47016 * 299.99621 * 21 19 17 25 25 H 1.08998 * 109.46927 * 60.00389 * 1 2 3 26 26 H 1.09006 * 109.46994 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47501 * 300.00572 * 1 2 3 28 28 H 1.08990 * 109.47101 * 173.94909 * 3 2 1 29 29 H 1.09000 * 109.46853 * 53.94949 * 3 2 1 30 30 H 1.08001 * 120.78647 * 359.95905 * 5 4 3 31 31 H 1.07998 * 120.41366 * 179.97438 * 6 5 4 32 32 H 1.08006 * 119.61536 * 179.74831 * 7 6 5 33 33 H 1.08006 * 119.61428 * 179.75175 * 9 8 7 34 34 H 1.09004 * 109.47212 * 186.05358 * 10 2 1 35 35 H 1.09010 * 109.46894 * 306.04500 * 10 2 1 36 36 H 1.07997 * 119.87497 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.74365 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.87627 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.12939 * 179.97438 * 15 14 13 40 40 H 0.96999 * 120.00395 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.4496 2.7536 -1.4180 6 6 0.1616 3.3593 -2.6312 7 6 1.0585 3.2354 -3.6756 8 7 2.1805 2.5596 -3.5244 9 6 2.4874 1.9709 -2.3849 10 6 1.9954 -0.7660 1.1376 11 6 1.6369 -2.2203 0.9730 12 6 0.5682 -2.7505 1.6596 13 6 0.2367 -4.0881 1.5103 14 6 0.9750 -4.9066 0.6694 15 6 2.0475 -4.3981 -0.0268 16 6 2.3898 -3.0402 0.1124 17 6 3.4858 -2.5050 -0.6029 18 1 3.5136 -1.4517 -0.8398 19 6 4.5346 -3.3403 -1.0038 20 7 4.6731 -4.5227 -0.4615 21 14 5.7369 -2.7668 -2.3135 22 1 6.4188 -1.5309 -1.8523 23 1 6.7472 -3.8276 -2.5565 24 1 5.0008 -2.4858 -3.5722 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.0796 1.3444 0.1083 29 1 1.5610 1.9274 0.8309 30 1 -0.2345 2.8298 -0.5857 31 1 -0.7542 3.9171 -2.7600 32 1 0.8395 3.7009 -4.6253 33 1 3.4140 1.4226 -2.2999 34 1 3.0797 -0.6610 1.1758 35 1 1.5610 -0.3871 2.0629 36 1 -0.0136 -2.1221 2.3176 37 1 -0.6033 -4.4957 2.0533 38 1 0.7075 -5.9473 0.5604 39 1 2.6215 -5.0376 -0.6810 40 1 5.4003 -5.1015 -0.7391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:02 Heat of formation + Delta-G solvation = 43.538601 kcal Electronic energy + Delta-G solvation = -21594.184969 eV Core-core repulsion = 18565.714654 eV Total energy + Delta-G solvation = -3028.470315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13159 -39.75871 -37.80901 -35.43758 -33.82734 -32.71230 -31.71598 -31.13759 -28.30062 -27.67864 -26.62160 -24.41573 -23.93344 -22.74652 -22.10476 -21.07331 -18.95788 -17.91427 -17.36753 -17.15048 -16.55988 -16.51635 -16.05209 -15.92970 -15.38690 -14.96140 -14.66059 -14.53763 -14.32174 -13.94694 -13.82068 -13.37366 -13.32763 -13.01525 -12.89050 -12.74231 -12.50884 -12.46580 -12.44503 -12.07253 -12.01217 -11.28770 -11.08136 -10.96690 -10.68337 -10.34385 -9.91256 -9.20145 -9.16264 -8.96967 -8.54023 -6.19547 0.22387 0.40028 1.04541 1.17525 1.40025 1.48632 1.58117 2.24217 2.80078 2.88340 3.37660 3.60875 3.88055 3.93132 3.98966 4.14225 4.15846 4.34125 4.37963 4.49978 4.54808 4.58811 4.67495 4.75429 4.78115 4.86305 4.92851 4.95233 5.12425 5.17736 5.23165 5.30215 5.38871 5.43942 5.59375 5.83723 5.85450 6.05885 6.20926 6.27283 6.34930 6.37041 6.52097 6.83491 7.09845 7.10382 7.18479 8.42165 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.006234 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.192559 B = 4490.098046 C = 6031.059369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.541 5.541 3 C 0.099 3.901 4 C -0.126 4.126 5 C -0.072 4.072 6 C -0.167 4.167 7 C 0.080 3.920 8 N -0.518 5.518 9 C 0.096 3.904 10 C 0.135 3.865 11 C -0.195 4.195 12 C -0.088 4.088 13 C -0.246 4.246 14 C -0.116 4.116 15 C -0.196 4.196 16 C 0.101 3.899 17 C -0.468 4.468 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.831 5.831 21 Si 0.965 3.035 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.269 1.269 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.178 0.822 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 14.021 -0.795 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.265 5.265 3 C -0.029 4.029 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.186 4.186 7 C -0.077 4.077 8 N -0.227 5.227 9 C -0.061 4.061 10 C 0.009 3.991 11 C -0.197 4.197 12 C -0.107 4.107 13 C -0.265 4.265 14 C -0.135 4.135 15 C -0.216 4.216 16 C 0.098 3.902 17 C -0.498 4.498 18 H 0.106 0.894 19 C -0.179 4.179 20 N -0.457 5.457 21 Si 0.787 3.213 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.194 1.194 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.185 0.815 32 H 0.195 0.805 33 H 0.160 0.840 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.001 13.530 -1.906 14.923 hybrid contribution -0.025 -0.156 0.793 0.808 sum -6.026 13.374 -1.114 14.711 Atomic orbital electron populations 1.22297 0.87309 1.01515 1.00257 1.61872 1.08277 1.11951 1.44402 1.20967 1.00773 0.88001 0.93117 1.20807 0.96300 0.98656 0.97055 1.21803 0.95146 0.94032 0.98911 1.22449 1.01882 1.00963 0.93310 1.23270 0.89189 0.94970 1.00306 1.67673 1.20506 1.09202 1.25316 1.22665 0.99723 0.95462 0.88233 1.20487 0.98906 0.89819 0.89902 1.19827 1.01262 0.95671 1.02939 1.20696 0.96215 0.94958 0.98808 1.20668 1.04077 0.94824 1.06954 1.20919 0.96123 0.98391 0.98028 1.21332 0.98804 0.97343 1.04074 1.17715 0.91644 0.91402 0.89408 1.19818 1.02355 0.96738 1.30853 0.89423 1.26657 0.99965 0.94339 0.96903 1.69890 1.29511 1.09820 1.36526 0.85500 0.77617 0.79143 0.78991 1.18026 1.19795 1.19368 0.91609 0.93015 0.94549 0.90199 0.92348 0.83041 0.81489 0.80534 0.83976 0.91929 0.94661 0.86976 0.87041 0.88131 0.88816 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 8.93 127.69 1.14 2.18 16 2 N -0.54 -18.56 4.46 -931.65 -4.15 -22.71 16 3 C 0.10 2.74 5.14 85.56 0.44 3.18 16 4 C -0.13 -3.37 4.89 -19.77 -0.10 -3.46 16 5 C -0.07 -1.52 8.15 22.47 0.18 -1.34 16 6 C -0.17 -3.07 10.11 22.36 0.23 -2.85 16 7 C 0.08 1.79 11.18 84.69 0.95 2.73 16 8 N -0.52 -15.53 10.36 -195.84 -2.03 -17.56 16 9 C 0.10 2.93 10.86 84.67 0.92 3.85 16 10 C 0.14 5.16 4.28 85.55 0.37 5.52 16 11 C -0.20 -8.91 4.64 -19.41 -0.09 -9.00 16 12 C -0.09 -3.71 8.60 22.22 0.19 -3.52 16 13 C -0.25 -10.65 10.05 22.46 0.23 -10.43 16 14 C -0.12 -5.53 10.02 22.22 0.22 -5.31 16 15 C -0.20 -10.54 8.69 22.73 0.20 -10.34 16 16 C 0.10 5.34 5.56 -21.29 -0.12 5.22 16 17 C -0.47 -24.70 8.18 23.46 0.19 -24.50 16 18 H 0.09 4.49 6.84 -2.91 -0.02 4.47 16 19 C 0.04 1.80 5.16 85.26 0.44 2.24 16 20 N -0.83 -44.36 10.95 21.82 0.24 -44.12 16 21 Si 0.97 39.84 29.59 68.60 2.03 41.87 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H 0.07 1.85 6.18 -2.39 -0.01 1.84 16 26 H 0.05 1.84 6.42 -2.38 -0.02 1.82 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 2.26 7.88 -2.39 -0.02 2.24 16 29 H 0.06 1.35 8.07 -2.39 -0.02 1.33 16 30 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.06 2.55 7.15 -2.38 -0.02 2.53 16 35 H 0.04 1.19 7.98 -2.38 -0.02 1.17 16 36 H 0.11 4.00 8.03 -2.91 -0.02 3.97 16 37 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.09 5.35 6.20 -2.91 -0.02 5.33 16 40 H 0.28 13.89 8.30 -92.71 -0.77 13.13 16 Total: -1.00 -62.21 330.69 2.50 -59.71 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 1.03 Total: 28.63 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 5.39 Total: -45.82 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -5.94 Total: -84.39 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -62.21 2.50 -59.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.250 kcal (2) G-P(sol) polarization free energy of solvation -62.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds