Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 111.00002 * 2 1 4 4 C 1.50698 * 109.46959 * 293.95448 * 3 2 1 5 5 C 1.38226 * 119.62037 * 95.00560 * 4 3 2 6 6 C 1.38626 * 119.16406 * 180.02562 * 5 4 3 7 7 C 1.38680 * 118.41726 * 359.97438 * 6 5 4 8 8 C 1.38180 * 119.16331 * 0.27830 * 7 6 5 9 9 N 1.31863 * 119.61838 * 275.01836 * 4 3 2 10 10 C 1.46907 * 110.99560 * 123.95485 * 2 1 3 11 11 C 1.50694 * 109.47025 * 66.04384 * 10 2 1 12 12 C 1.37638 * 120.13147 * 259.99200 * 11 10 2 13 13 C 1.38605 * 120.25205 * 180.02562 * 12 11 10 14 14 C 1.38660 * 120.50097 * 359.97438 * 13 12 11 15 15 C 1.37599 * 120.24655 * 0.02843 * 14 13 12 16 16 C 1.40702 * 120.12608 * 79.72939 * 11 10 2 17 17 C 1.41398 * 120.24252 * 359.97438 * 16 11 10 18 18 H 1.07999 * 120.00079 * 333.96091 * 17 16 11 19 19 C 1.39949 * 119.99778 * 153.96623 * 17 16 11 20 20 N 1.30819 * 120.00084 * 343.66618 * 19 17 16 21 21 Si 1.86801 * 119.99791 * 163.66896 * 19 17 16 22 22 H 1.48501 * 109.47235 * 59.99765 * 21 19 17 23 23 H 1.48503 * 109.46767 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47177 * 299.99448 * 21 19 17 25 25 H 1.08995 * 109.46857 * 60.00112 * 1 2 3 26 26 H 1.09003 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47169 * 300.00291 * 1 2 3 28 28 H 1.09000 * 109.47120 * 173.95023 * 3 2 1 29 29 H 1.09004 * 109.47102 * 53.95532 * 3 2 1 30 30 H 1.07997 * 120.41813 * 0.03451 * 5 4 3 31 31 H 1.08003 * 120.79538 * 180.02562 * 6 5 4 32 32 H 1.07996 * 120.41359 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.61725 * 179.70079 * 8 7 6 34 34 H 1.09000 * 109.46703 * 186.04750 * 10 2 1 35 35 H 1.09002 * 109.46963 * 306.04397 * 10 2 1 36 36 H 1.08007 * 119.86948 * 0.02562 * 12 11 10 37 37 H 1.07999 * 119.75175 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.87950 * 179.97438 * 14 13 12 39 39 H 1.08004 * 120.12278 * 179.97438 * 15 14 13 40 40 H 0.96998 * 120.00352 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 6 0.5018 2.8326 -1.3691 6 6 0.1806 3.4493 -2.5684 7 6 1.0174 3.2523 -3.6566 8 6 2.1323 2.4489 -3.5120 9 7 2.4096 1.8819 -2.3541 10 6 1.9954 -0.7661 1.1377 11 6 1.6368 -2.2204 0.9729 12 6 0.5682 -2.7506 1.6595 13 6 0.2365 -4.0881 1.5102 14 6 0.9747 -4.9066 0.6690 15 6 2.0471 -4.3981 -0.0272 16 6 2.3897 -3.0403 0.1123 17 6 3.4858 -2.5052 -0.6029 18 1 3.5137 -1.4518 -0.8398 19 6 4.5346 -3.3405 -1.0039 20 7 4.6730 -4.5230 -0.4616 21 14 5.7370 -2.7670 -2.3134 22 1 6.4190 -1.5311 -1.8521 23 1 6.7472 -3.8280 -2.5565 24 1 5.0010 -2.4859 -3.5722 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.0798 1.3444 0.1083 29 1 1.5612 1.9273 0.8310 30 1 -0.1269 2.9644 -0.5010 31 1 -0.6998 4.0690 -2.6531 32 1 0.7981 3.7176 -4.6062 33 1 2.7864 2.2866 -4.3560 34 1 3.0797 -0.6612 1.1757 35 1 1.5610 -0.3873 2.0628 36 1 -0.0140 -2.1220 2.3171 37 1 -0.6033 -4.4958 2.0532 38 1 0.7076 -5.9474 0.5605 39 1 2.6210 -5.0376 -0.6816 40 1 5.4001 -5.1018 -0.7393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235513073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = 61.332434 kcal Electronic energy + Delta-G solvation = -21590.131564 eV Core-core repulsion = 18562.432848 eV Total energy + Delta-G solvation = -3027.698716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10848 -38.02129 -36.20409 -33.51532 -32.42910 -31.87949 -30.03835 -29.30341 -27.12338 -26.13721 -24.89404 -23.38905 -22.62757 -20.92855 -20.78697 -19.30747 -17.03177 -16.71838 -16.18141 -15.57473 -15.23128 -15.20231 -14.55411 -14.41316 -13.92685 -13.42782 -13.26626 -13.21981 -12.98604 -12.57986 -12.45883 -11.74680 -11.52728 -11.52242 -11.29090 -11.18361 -11.01923 -10.93570 -10.72641 -10.46779 -10.26643 -9.77654 -9.42262 -9.26777 -9.16175 -9.03626 -8.91163 -7.66427 -7.26583 -7.21276 -6.62808 -4.19968 1.18685 1.38697 2.89424 3.04635 3.16857 3.23737 3.37422 3.88175 4.07458 4.44163 4.65792 4.78231 4.87924 4.92815 5.09810 5.20976 5.56542 5.58357 5.74972 5.84530 5.85526 5.86273 6.01747 6.11590 6.16288 6.21522 6.29696 6.34474 6.47862 6.55838 6.61929 6.78573 6.93006 7.22481 7.37070 7.48057 7.64304 7.67962 7.78027 8.02956 8.17874 8.22879 8.26672 8.43285 8.80986 9.06438 9.12792 10.31590 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.006243 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.971042 B = 4484.171347 C = 6016.852926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.516 5.516 3 C 0.100 3.900 4 C 0.151 3.849 5 C -0.171 4.171 6 C -0.079 4.079 7 C -0.184 4.184 8 C 0.101 3.899 9 N -0.460 5.460 10 C 0.128 3.872 11 C -0.196 4.196 12 C -0.085 4.085 13 C -0.249 4.249 14 C -0.107 4.107 15 C -0.164 4.164 16 C 0.132 3.868 17 C -0.442 4.442 18 H 0.093 0.907 19 C 0.074 3.926 20 N -0.799 5.799 21 Si 0.905 3.095 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.264 1.264 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.013 0.987 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.153 0.847 34 H 0.078 0.922 35 H 0.016 0.984 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 12.878 -2.886 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.240 5.240 3 C -0.029 4.029 4 C 0.013 3.987 5 C -0.192 4.192 6 C -0.105 4.105 7 C -0.204 4.204 8 C -0.056 4.056 9 N -0.169 5.169 10 C 0.002 3.998 11 C -0.198 4.198 12 C -0.104 4.104 13 C -0.268 4.268 14 C -0.125 4.125 15 C -0.183 4.183 16 C 0.129 3.871 17 C -0.472 4.472 18 H 0.111 0.889 19 C -0.143 4.143 20 N -0.424 5.424 21 Si 0.730 3.270 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.189 1.189 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.324 11.927 -3.225 13.090 hybrid contribution -0.599 0.996 -0.028 1.162 sum -4.922 12.922 -3.252 14.206 Atomic orbital electron populations 1.22385 0.88323 1.02747 0.98654 1.61957 1.07038 1.09818 1.45175 1.20986 1.01762 0.89585 0.90533 1.21231 0.90385 0.92456 0.94652 1.21980 0.98540 0.99677 0.98955 1.21494 0.98683 0.97571 0.92753 1.22090 0.97039 1.01608 0.99708 1.22806 0.95118 0.92424 0.95291 1.67570 1.31201 1.19070 0.99041 1.20658 0.99645 0.91328 0.88168 1.19410 1.01935 0.93992 1.04418 1.20346 0.96453 0.94669 0.98934 1.20263 1.03959 0.94641 1.07959 1.20664 0.96602 0.97138 0.98138 1.21356 0.97399 0.96894 1.02680 1.17374 0.90694 0.90871 0.88205 1.19763 1.01471 0.96864 1.29083 0.88913 1.25966 0.98575 0.94293 0.95484 1.69834 1.28577 1.08743 1.35289 0.86408 0.79500 0.79056 0.81996 1.18951 1.20829 1.18858 0.92746 0.90397 0.96810 0.89021 0.94041 0.85305 0.85278 0.85234 0.83002 0.90393 0.96618 0.90076 0.89957 0.89827 0.86619 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 8.97 60.07 0.54 1.00 16 2 N -0.52 -9.78 4.46 -245.82 -1.10 -10.87 16 3 C 0.10 1.60 5.29 -4.98 -0.03 1.58 16 4 C 0.15 2.36 5.64 -82.58 -0.47 1.89 16 5 C -0.17 -2.16 8.36 -39.44 -0.33 -2.49 16 6 C -0.08 -0.86 10.18 -39.27 -0.40 -1.26 16 7 C -0.18 -2.04 10.11 -39.44 -0.40 -2.43 16 8 C 0.10 1.37 11.18 -17.55 -0.20 1.17 16 9 N -0.46 -7.79 10.27 -9.47 -0.10 -7.89 16 10 C 0.13 2.61 4.28 -4.97 -0.02 2.59 16 11 C -0.20 -4.64 4.64 -103.91 -0.48 -5.12 16 12 C -0.09 -1.91 8.60 -39.66 -0.34 -2.25 16 13 C -0.25 -5.70 10.05 -39.29 -0.39 -6.09 16 14 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 15 C -0.16 -4.35 8.69 -38.87 -0.34 -4.69 16 16 C 0.13 3.49 5.56 -106.82 -0.59 2.90 16 17 C -0.44 -11.76 8.18 -37.74 -0.31 -12.07 16 18 H 0.09 2.46 6.84 -52.49 -0.36 2.10 16 19 C 0.07 1.89 5.16 -17.34 -0.09 1.80 16 20 N -0.80 -21.01 10.95 55.55 0.61 -20.41 16 21 Si 0.91 19.69 29.59 -169.99 -5.03 14.66 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 25 H 0.05 0.88 6.40 -51.93 -0.33 0.54 16 26 H 0.08 1.50 6.42 -51.93 -0.33 1.16 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 29 H 0.04 0.57 8.02 -51.93 -0.42 0.15 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.08 1.67 7.15 -51.93 -0.37 1.30 16 35 H 0.02 0.29 7.98 -51.93 -0.41 -0.12 16 36 H 0.08 1.62 8.03 -52.48 -0.42 1.20 16 37 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.08 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.12 3.19 6.20 -52.48 -0.33 2.86 16 40 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -29.30 331.28 -10.35 -39.65 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.48 Total: 6.32 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -4.25 Total: -26.45 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.58 Total: -39.16 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.30 -10.35 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.982 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds