Wall clock time and date at job start Tue Mar 31 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00502 * 2 1 4 4 C 1.50700 * 109.47043 * 293.95785 * 3 2 1 5 5 H 1.07996 * 120.00064 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00371 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00204 * 180.02562 * 6 4 3 9 9 H 1.48509 * 109.46914 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47619 * 119.99648 * 8 6 4 11 11 H 1.48493 * 109.47194 * 240.00094 * 8 6 4 12 12 C 1.46894 * 111.00266 * 123.95684 * 2 1 3 13 13 C 1.50697 * 109.47164 * 66.04185 * 12 2 1 14 14 C 1.38037 * 120.06665 * 253.72835 * 13 12 2 15 15 C 1.38299 * 120.12849 * 179.97438 * 14 13 12 16 16 C 1.38351 * 120.24340 * 359.97438 * 15 14 13 17 17 C 1.37993 * 120.12075 * 359.72019 * 16 15 14 18 18 C 1.39335 * 120.06437 * 73.71053 * 13 12 2 19 19 C 1.48369 * 120.11631 * 0.02562 * 18 13 12 20 20 C 1.39770 * 120.90462 * 236.79976 * 19 18 13 21 21 C 1.37981 * 119.02090 * 180.02562 * 20 19 18 22 22 N 1.31924 * 120.88174 * 0.28077 * 21 20 19 23 23 C 1.31926 * 122.00206 * 359.42458 * 22 21 20 24 24 C 1.37978 * 120.88566 * 0.57655 * 23 22 21 25 25 H 1.09000 * 109.46558 * 296.04806 * 1 2 3 26 26 H 1.08999 * 109.46919 * 56.04413 * 1 2 3 27 27 H 1.08994 * 109.47096 * 176.04813 * 1 2 3 28 28 H 1.08997 * 109.46936 * 53.95369 * 3 2 1 29 29 H 1.08998 * 109.47916 * 173.95387 * 3 2 1 30 30 H 0.96993 * 120.00395 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.47055 * 306.04111 * 12 2 1 32 32 H 1.09003 * 109.47731 * 186.04655 * 12 2 1 33 33 H 1.08005 * 119.93330 * 359.97438 * 14 13 12 34 34 H 1.07999 * 119.87736 * 180.02562 * 15 14 13 35 35 H 1.07999 * 119.93613 * 180.02562 * 16 15 14 36 36 H 1.08003 * 120.06114 * 180.29884 * 17 16 15 37 37 H 1.07997 * 120.48893 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.55451 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.56059 * 180.27554 * 23 22 21 40 40 H 1.07996 * 120.49619 * 179.69770 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0269 3.3494 -1.5284 7 7 2.7113 4.0022 -0.6146 8 14 1.5819 4.1874 -3.1376 9 1 0.8146 3.2447 -3.9909 10 1 0.7544 5.3883 -2.8581 11 1 2.8232 4.5948 -3.8433 12 6 1.9954 -0.7660 1.1375 13 6 1.6369 -2.2204 0.9727 14 6 0.6494 -2.7823 1.7567 15 6 0.3189 -4.1168 1.6062 16 6 0.9749 -4.8958 0.6698 17 6 1.9593 -4.3430 -0.1236 18 6 2.3012 -3.0005 0.0286 19 6 3.3637 -2.4022 -0.8168 20 6 3.2798 -2.4436 -2.2114 21 6 4.2902 -1.8755 -2.9599 22 7 5.3263 -1.3045 -2.3761 23 6 5.4409 -1.2393 -1.0634 24 6 4.4759 -1.7824 -0.2403 25 1 -0.3632 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3444 0.1082 30 1 2.9853 4.9184 -0.7762 31 1 1.5612 -0.3872 2.0628 32 1 3.0798 -0.6611 1.1756 33 1 0.1338 -2.1786 2.4890 34 1 -0.4546 -4.5521 2.2214 35 1 0.7126 -5.9373 0.5561 36 1 2.4674 -4.9508 -0.8577 37 1 2.4367 -2.9134 -2.6959 38 1 4.2340 -1.9022 -4.0381 39 1 6.3041 -0.7585 -0.6272 40 1 4.5785 -1.7297 0.8335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235606819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:24 Heat of formation + Delta-G solvation = 66.232924 kcal Electronic energy + Delta-G solvation = -21903.843855 eV Core-core repulsion = 18876.357641 eV Total energy + Delta-G solvation = -3027.486215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14970 -38.75847 -36.34676 -33.36446 -32.66918 -31.29719 -30.73192 -29.54567 -27.19483 -26.63075 -24.17050 -23.57327 -22.91008 -21.59461 -20.97856 -19.98338 -17.15430 -16.38613 -15.96215 -15.73895 -15.39997 -15.12891 -14.86582 -14.49462 -14.09097 -13.76609 -13.42885 -13.34502 -13.22487 -13.01267 -12.44075 -12.38326 -11.92837 -11.63704 -11.35965 -11.17658 -11.05311 -10.91631 -10.81184 -10.59674 -10.44176 -9.86434 -9.50222 -9.20236 -9.07890 -8.74113 -8.70239 -8.42858 -8.30760 -7.24390 -6.01403 -4.02029 1.12652 1.47280 1.57942 1.89433 3.32134 3.39633 3.44122 3.80603 4.24145 4.44904 4.69086 4.85774 4.92668 4.97155 5.06091 5.22443 5.25937 5.35593 5.40773 5.45286 5.54438 5.64671 5.81744 5.89267 5.97785 6.03300 6.13077 6.16478 6.23349 6.32378 6.34932 6.47810 6.54912 6.60977 6.74121 6.83457 7.05441 7.09137 7.27547 7.32574 7.80592 8.07946 8.19441 8.39631 8.54361 9.05138 9.62100 11.09623 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.006151 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.086056 B = 4550.781049 C = 5587.616838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.527 5.527 3 C 0.196 3.804 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 C 0.081 3.919 13 C -0.045 4.045 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.034 4.034 19 C 0.025 3.975 20 C -0.151 4.151 21 C 0.103 3.897 22 N -0.488 5.488 23 C 0.105 3.895 24 C -0.157 4.157 25 H 0.009 0.991 26 H 0.073 0.927 27 H 0.044 0.956 28 H -0.011 1.011 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 -16.842 3.165 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.251 5.251 3 C 0.071 3.929 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.047 4.047 13 C -0.045 4.045 14 C -0.136 4.136 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.125 4.125 18 C -0.035 4.035 19 C 0.017 3.983 20 C -0.171 4.171 21 C -0.054 4.054 22 N -0.197 5.197 23 C -0.052 4.052 24 C -0.177 4.177 25 H 0.028 0.972 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.013 -16.502 2.238 16.653 hybrid contribution -1.318 0.769 0.513 1.610 sum -1.305 -15.734 2.751 16.026 Atomic orbital electron populations 1.22214 0.88967 0.99500 1.00371 1.62140 1.06832 1.17576 1.38543 1.19707 0.95221 0.81310 0.96635 1.21135 1.34610 0.96767 1.01553 0.91983 1.24960 0.95305 0.97355 0.96876 1.69959 1.38531 1.11357 1.33983 0.86481 0.78186 0.79304 0.83713 1.19711 1.21150 1.20956 1.21208 1.00925 0.89065 0.93516 1.20044 0.94763 0.95773 0.93968 1.21026 0.97508 0.95173 0.99859 1.21123 0.99775 0.94054 0.98648 1.20974 0.97127 0.99670 0.96887 1.21132 0.97788 0.94051 0.99480 1.18545 0.96104 0.93002 0.95837 1.18845 0.92299 0.94333 0.92836 1.22001 0.99969 1.01760 0.93386 1.22521 0.89520 0.93256 1.00091 1.67564 1.24588 1.15043 1.12475 1.22516 0.98052 0.95527 0.89077 1.22036 0.95040 0.99739 1.00885 0.97221 0.90800 0.93708 0.99314 0.95406 0.93030 0.95124 0.89968 0.86168 0.86333 0.86244 0.86124 0.85403 0.83280 0.83223 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.17 60.06 0.55 1.31 16 2 N -0.53 -11.28 4.58 -245.84 -1.13 -12.41 16 3 C 0.20 5.11 4.72 -4.98 -0.02 5.09 16 4 C -0.50 -14.22 8.46 -34.44 -0.29 -14.51 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.08 1.45 4.40 -4.98 -0.02 1.43 16 13 C -0.04 -0.69 4.39 -104.29 -0.46 -1.15 16 14 C -0.12 -1.56 9.21 -39.63 -0.37 -1.92 16 15 C -0.12 -1.34 10.04 -39.52 -0.40 -1.74 16 16 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 17 C -0.11 -1.33 9.65 -39.25 -0.38 -1.70 16 18 C -0.03 -0.51 5.45 -104.90 -0.57 -1.08 16 19 C 0.03 0.40 4.78 -104.58 -0.50 -0.10 16 20 C -0.15 -2.35 9.75 -39.10 -0.38 -2.73 16 21 C 0.10 1.65 11.17 -17.61 -0.20 1.45 16 22 N -0.49 -8.63 10.35 -13.34 -0.14 -8.77 16 23 C 0.10 1.72 11.17 -17.61 -0.20 1.52 16 24 C -0.16 -2.48 8.11 -39.10 -0.32 -2.79 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 27 H 0.04 0.80 6.94 -51.93 -0.36 0.44 16 28 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 29 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.54 7.92 -51.93 -0.41 0.13 16 32 H 0.08 1.49 5.03 -51.93 -0.26 1.22 16 33 H 0.12 1.47 7.99 -52.48 -0.42 1.05 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 39 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 40 H 0.13 1.80 7.03 -52.49 -0.37 1.43 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -31.85 334.68 -10.02 -41.87 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.47 Total: 0.65 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -4.04 Total: -17.24 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.53 Total: -47.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.85 -10.02 -41.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235606819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.107 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds