Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 110.99629 * 2 1 4 4 C 1.46898 * 110.99820 * 123.94913 * 2 1 3 5 5 C 1.50705 * 109.47114 * 66.05354 * 4 2 1 6 6 C 1.38415 * 119.92216 * 270.02204 * 5 4 2 7 7 C 1.38369 * 120.28766 * 179.97438 * 6 5 4 8 8 C 1.37955 * 120.15017 * 359.97438 * 7 6 5 9 9 C 1.39593 * 119.84790 * 359.73007 * 8 7 6 10 10 C 1.47970 * 120.14197 * 180.26971 * 9 8 7 11 11 C 1.39894 * 119.45027 * 359.97438 * 10 9 8 12 12 C 1.36611 * 119.46392 * 179.74636 * 11 10 9 13 13 C 1.41302 * 118.41398 * 0.51336 * 12 11 10 14 14 C 1.41047 * 120.55220 * 179.70739 * 13 12 11 15 15 H 1.08007 * 120.00082 * 330.35545 * 14 13 12 16 16 C 1.40033 * 120.00012 * 150.36214 * 14 13 12 17 17 N 1.30781 * 119.99870 * 161.80286 * 16 14 13 18 18 Si 1.86799 * 119.99603 * 341.80205 * 16 14 13 19 19 H 1.48497 * 109.47085 * 95.41330 * 18 16 14 20 20 H 1.48503 * 109.46687 * 215.41014 * 18 16 14 21 21 H 1.48498 * 109.47331 * 335.40997 * 18 16 14 22 22 C 1.40945 * 118.89105 * 359.72863 * 13 12 11 23 23 N 1.31265 * 120.40595 * 0.02562 * 22 13 12 24 24 C 1.37911 * 119.93029 * 89.99138 * 5 4 2 25 25 H 1.08994 * 109.47589 * 296.04960 * 1 2 3 26 26 H 1.09002 * 109.47077 * 56.05021 * 1 2 3 27 27 H 1.09004 * 109.47191 * 176.04526 * 1 2 3 28 28 H 1.09001 * 109.46788 * 183.95010 * 3 2 1 29 29 H 1.08994 * 109.47381 * 303.94979 * 3 2 1 30 30 H 1.08999 * 109.47169 * 63.95484 * 3 2 1 31 31 H 1.09000 * 109.47828 * 306.05271 * 4 2 1 32 32 H 1.09001 * 109.46932 * 186.04737 * 4 2 1 33 33 H 1.07994 * 119.85455 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.92455 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.07664 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.26453 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.78714 * 180.22365 * 12 11 10 38 38 H 0.97002 * 119.99973 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.79995 * 180.02562 * 22 13 12 40 40 H 1.08006 * 120.07213 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6370 -2.2204 0.9729 6 6 0.4490 -2.7022 1.4949 7 6 0.1122 -4.0361 1.3476 8 6 0.9593 -4.8949 0.6782 9 6 2.1560 -4.4140 0.1441 10 6 3.0667 -5.3281 -0.5803 11 6 2.7180 -6.6753 -0.7237 12 6 3.5561 -7.5183 -1.3969 13 6 4.7603 -6.9943 -1.9183 14 6 5.6614 -7.8257 -2.6156 15 1 5.7238 -8.8766 -2.3743 16 6 6.4753 -7.2886 -3.6206 17 7 7.5382 -7.9384 -4.0183 18 14 6.0425 -5.6438 -4.3932 19 1 6.7958 -4.5622 -3.7093 20 1 6.4029 -5.6635 -5.8337 21 1 4.5849 -5.3983 -4.2509 22 6 5.0462 -5.6271 -1.7296 23 7 4.2059 -4.8563 -1.0794 24 6 2.4930 -3.0683 0.3020 25 1 -0.3634 0.4513 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8724 0.9233 31 1 1.5610 -0.3872 2.0629 32 1 3.0797 -0.6610 1.1757 33 1 -0.2183 -2.0338 2.0187 34 1 -0.8165 -4.4057 1.7568 35 1 0.6951 -5.9357 0.5636 36 1 1.7920 -7.0450 -0.3088 37 1 3.3063 -8.5614 -1.5234 38 1 8.1022 -7.5662 -4.7142 39 1 5.9623 -5.2111 -2.1223 40 1 3.4193 -2.6909 -0.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236413458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = 50.895693 kcal Electronic energy + Delta-G solvation = -20888.318480 eV Core-core repulsion = 17860.167193 eV Total energy + Delta-G solvation = -3028.151287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.44030 -38.39844 -36.82498 -34.16767 -32.10779 -31.64706 -30.84435 -29.45301 -27.63290 -26.62824 -25.45487 -23.02074 -22.35413 -21.96255 -20.73118 -19.92231 -17.81295 -16.64850 -15.78519 -15.57854 -15.45715 -15.39507 -14.76765 -14.62407 -13.95583 -13.76912 -13.53407 -13.10168 -12.94756 -12.59460 -12.46721 -12.35530 -12.11894 -11.90505 -11.88884 -11.71730 -11.55188 -11.12717 -11.05215 -10.76808 -10.64587 -10.41825 -10.10929 -9.53971 -8.81427 -8.64534 -8.50383 -8.28218 -8.21883 -7.38729 -7.23813 -4.69507 1.42948 1.82358 2.53407 2.60934 3.02799 3.12004 3.21100 3.80254 3.88385 4.25633 4.58595 4.91079 5.02796 5.14588 5.19658 5.24164 5.34517 5.36335 5.42897 5.50622 5.56605 5.72076 5.75256 5.77742 5.83272 5.90385 6.03470 6.19655 6.24139 6.39546 6.50690 6.55106 6.77604 6.81404 6.86512 6.94202 7.00925 7.08100 7.11978 7.30785 7.49059 7.51700 7.79203 7.99652 8.30046 8.43876 9.32053 9.75425 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.004269 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.030052 B = 6557.973534 C = 7616.027181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.098 3.902 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.132 4.132 9 C 0.017 3.983 10 C -0.007 4.007 11 C -0.103 4.103 12 C -0.185 4.185 13 C 0.046 3.954 14 C -0.417 4.417 15 H 0.097 0.903 16 C 0.082 3.918 17 N -0.785 5.785 18 Si 0.910 3.090 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.244 1.244 22 C -0.026 4.026 23 N -0.434 5.434 24 C -0.087 4.087 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.292 0.708 39 H 0.133 0.867 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 11.326 6.549 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.029 4.029 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.136 4.136 8 C -0.152 4.152 9 C 0.016 3.984 10 C -0.141 4.141 11 C -0.123 4.123 12 C -0.209 4.209 13 C 0.041 3.959 14 C -0.444 4.444 15 H 0.115 0.885 16 C -0.140 4.140 17 N -0.407 5.407 18 Si 0.736 3.264 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.167 1.167 22 C -0.191 4.191 23 N -0.141 5.141 24 C -0.107 4.107 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.724 11.883 6.077 16.514 hybrid contribution -0.464 -0.017 0.142 0.486 sum -10.188 11.867 6.219 16.831 Atomic orbital electron populations 1.22457 0.87434 1.02940 0.99781 1.61946 1.08104 1.13235 1.43185 1.22385 1.00977 0.88787 1.00160 1.21034 1.00366 0.90507 0.91019 1.19522 0.95140 0.94299 0.99352 1.20829 0.96847 0.95573 1.02792 1.20839 0.99215 0.93536 1.00035 1.21165 0.94467 0.99660 0.99881 1.18646 0.92596 0.92674 0.94515 1.18825 0.95381 0.91144 1.08742 1.21286 0.98990 0.93975 0.98069 1.21041 0.94920 0.99359 1.05626 1.18693 0.91747 0.93321 0.92154 1.19574 1.12948 0.98213 1.13682 0.88495 1.26297 0.92249 0.99463 0.96030 1.69650 1.09109 1.38888 1.23027 0.86313 0.82330 0.80442 0.77351 1.18688 1.21078 1.16741 1.22458 0.99544 0.91797 1.05312 1.66929 1.01986 1.39057 1.06168 1.21101 0.99701 0.92316 0.97546 0.96034 0.91747 0.90544 0.91242 0.91434 0.95951 0.94379 0.89996 0.87410 0.86784 0.86280 0.87419 0.87038 0.89716 0.85044 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.13 60.06 0.55 0.79 16 2 N -0.54 -6.88 5.01 -252.72 -1.27 -8.15 16 3 C 0.03 0.25 9.57 60.07 0.57 0.83 16 4 C 0.10 1.26 5.11 -4.97 -0.03 1.24 16 5 C -0.08 -1.26 4.88 -104.67 -0.51 -1.77 16 6 C -0.14 -1.95 7.96 -39.47 -0.31 -2.27 16 7 C -0.12 -1.67 10.03 -39.64 -0.40 -2.07 16 8 C -0.13 -2.18 9.42 -39.18 -0.37 -2.55 16 9 C 0.02 0.32 5.88 -104.89 -0.62 -0.29 16 10 C -0.01 -0.17 6.74 -82.74 -0.56 -0.72 16 11 C -0.10 -2.19 9.38 -39.55 -0.37 -2.56 16 12 C -0.18 -4.17 9.87 -39.01 -0.39 -4.56 16 13 C 0.05 1.14 5.12 -106.64 -0.55 0.60 16 14 C -0.42 -10.64 9.58 -37.84 -0.36 -11.00 16 15 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.08 2.03 5.41 -17.33 -0.09 1.93 16 17 N -0.78 -19.53 13.93 55.55 0.77 -18.75 16 18 Si 0.91 20.09 24.52 -169.99 -4.17 15.92 16 19 H -0.26 -5.64 6.71 56.52 0.38 -5.26 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.24 -5.73 6.86 56.52 0.39 -5.35 16 22 C -0.03 -0.64 8.37 -16.77 -0.14 -0.78 16 23 N -0.43 -10.54 9.39 -9.10 -0.09 -10.63 16 24 C -0.09 -1.60 9.22 -39.18 -0.36 -1.96 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 27 H 0.08 0.93 6.16 -51.93 -0.32 0.61 16 28 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 32 H 0.08 1.04 8.00 -51.93 -0.42 0.63 16 33 H 0.11 1.24 8.02 -52.49 -0.42 0.82 16 34 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.79 6.15 -52.49 -0.32 1.46 16 36 H 0.11 1.91 6.15 -52.49 -0.32 1.59 16 37 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 39 H 0.13 3.20 4.72 -52.48 -0.25 2.95 16 40 H 0.13 2.51 7.52 -52.48 -0.39 2.11 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -27.34 327.10 -9.16 -36.50 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.41 Total: 5.32 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -3.93 Total: -25.14 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.58 Total: -37.53 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.34 -9.16 -36.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236413458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.397 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds