Wall clock time and date at job start Tue Mar 31 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 110.99629 * 2 1 4 4 C 1.46898 * 110.99820 * 123.94913 * 2 1 3 5 5 C 1.50705 * 109.47114 * 66.05354 * 4 2 1 6 6 C 1.38415 * 119.92216 * 270.02204 * 5 4 2 7 7 C 1.38369 * 120.28766 * 179.97438 * 6 5 4 8 8 C 1.37955 * 120.15017 * 359.97438 * 7 6 5 9 9 C 1.39593 * 119.84790 * 359.73007 * 8 7 6 10 10 C 1.47970 * 120.14197 * 180.26971 * 9 8 7 11 11 C 1.39894 * 119.45027 * 359.97438 * 10 9 8 12 12 C 1.36611 * 119.46392 * 179.74636 * 11 10 9 13 13 C 1.41302 * 118.41398 * 0.51336 * 12 11 10 14 14 C 1.41047 * 120.55220 * 179.70739 * 13 12 11 15 15 H 1.08007 * 120.00082 * 330.35545 * 14 13 12 16 16 C 1.40033 * 120.00012 * 150.36214 * 14 13 12 17 17 N 1.30781 * 119.99870 * 161.80286 * 16 14 13 18 18 Si 1.86799 * 119.99603 * 341.80205 * 16 14 13 19 19 H 1.48497 * 109.47085 * 95.41330 * 18 16 14 20 20 H 1.48503 * 109.46687 * 215.41014 * 18 16 14 21 21 H 1.48498 * 109.47331 * 335.40997 * 18 16 14 22 22 C 1.40945 * 118.89105 * 359.72863 * 13 12 11 23 23 N 1.31265 * 120.40595 * 0.02562 * 22 13 12 24 24 C 1.37911 * 119.93029 * 89.99138 * 5 4 2 25 25 H 1.08994 * 109.47589 * 296.04960 * 1 2 3 26 26 H 1.09002 * 109.47077 * 56.05021 * 1 2 3 27 27 H 1.09004 * 109.47191 * 176.04526 * 1 2 3 28 28 H 1.09001 * 109.46788 * 183.95010 * 3 2 1 29 29 H 1.08994 * 109.47381 * 303.94979 * 3 2 1 30 30 H 1.08999 * 109.47169 * 63.95484 * 3 2 1 31 31 H 1.09000 * 109.47828 * 306.05271 * 4 2 1 32 32 H 1.09001 * 109.46932 * 186.04737 * 4 2 1 33 33 H 1.07994 * 119.85455 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.92455 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.07664 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.26453 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.78714 * 180.22365 * 12 11 10 38 38 H 0.97002 * 119.99973 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.79995 * 180.02562 * 22 13 12 40 40 H 1.08006 * 120.07213 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6370 -2.2204 0.9729 6 6 0.4490 -2.7022 1.4949 7 6 0.1122 -4.0361 1.3476 8 6 0.9593 -4.8949 0.6782 9 6 2.1560 -4.4140 0.1441 10 6 3.0667 -5.3281 -0.5803 11 6 2.7180 -6.6753 -0.7237 12 6 3.5561 -7.5183 -1.3969 13 6 4.7603 -6.9943 -1.9183 14 6 5.6614 -7.8257 -2.6156 15 1 5.7238 -8.8766 -2.3743 16 6 6.4753 -7.2886 -3.6206 17 7 7.5382 -7.9384 -4.0183 18 14 6.0425 -5.6438 -4.3932 19 1 6.7958 -4.5622 -3.7093 20 1 6.4029 -5.6635 -5.8337 21 1 4.5849 -5.3983 -4.2509 22 6 5.0462 -5.6271 -1.7296 23 7 4.2059 -4.8563 -1.0794 24 6 2.4930 -3.0683 0.3020 25 1 -0.3634 0.4513 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8724 0.9233 31 1 1.5610 -0.3872 2.0629 32 1 3.0797 -0.6610 1.1757 33 1 -0.2183 -2.0338 2.0187 34 1 -0.8165 -4.4057 1.7568 35 1 0.6951 -5.9357 0.5636 36 1 1.7920 -7.0450 -0.3088 37 1 3.3063 -8.5614 -1.5234 38 1 8.1022 -7.5662 -4.7142 39 1 5.9623 -5.2111 -2.1223 40 1 3.4193 -2.6909 -0.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236413458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:32 Heat of formation + Delta-G solvation = 34.908407 kcal Electronic energy + Delta-G solvation = -20889.011740 eV Core-core repulsion = 17860.167193 eV Total energy + Delta-G solvation = -3028.844548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91799 -39.87617 -37.87846 -35.96310 -33.66986 -33.26227 -32.20969 -31.01910 -28.46808 -27.70663 -27.14267 -24.56136 -23.89454 -23.20505 -22.11330 -21.31229 -19.65960 -18.12996 -17.39811 -16.90727 -16.69881 -16.38107 -16.17683 -15.82234 -15.48567 -15.13868 -14.99710 -14.72344 -14.62947 -14.01439 -13.76690 -13.54196 -13.42167 -13.18092 -12.98282 -12.92575 -12.82604 -12.63498 -12.44590 -12.41665 -12.02689 -11.81961 -11.69331 -11.33972 -10.51797 -10.28380 -10.03297 -9.65445 -9.25349 -9.08328 -8.98869 -6.60055 -0.03142 0.57894 0.73447 0.96031 1.23030 1.35131 1.41030 2.01272 2.46272 2.89131 3.29600 3.57100 3.63147 3.79901 4.00477 4.16173 4.26699 4.31710 4.38073 4.41933 4.43787 4.48490 4.58085 4.64497 4.72110 4.73247 4.78225 4.88672 4.99056 5.00980 5.05942 5.11615 5.20974 5.25950 5.46102 5.53466 5.66658 5.75757 5.89790 5.97280 6.05297 6.10556 6.14567 6.23125 6.44792 6.57954 7.49273 7.97664 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.004269 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.030052 B = 6557.973534 C = 7616.027181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.567 5.567 3 C 0.026 3.974 4 C 0.100 3.900 5 C -0.084 4.084 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.129 4.129 9 C -0.026 4.026 10 C 0.004 3.996 11 C -0.106 4.106 12 C -0.185 4.185 13 C 0.030 3.970 14 C -0.454 4.454 15 H 0.076 0.924 16 C 0.059 3.941 17 N -0.819 5.819 18 Si 0.956 3.044 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.269 1.269 22 C -0.046 4.046 23 N -0.458 5.458 24 C -0.103 4.103 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.302 0.698 39 H 0.127 0.873 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.845 13.278 8.421 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.292 5.292 3 C -0.122 4.122 4 C -0.027 4.027 5 C -0.084 4.084 6 C -0.141 4.141 7 C -0.130 4.130 8 C -0.148 4.148 9 C -0.027 4.027 10 C -0.132 4.132 11 C -0.126 4.126 12 C -0.211 4.211 13 C 0.025 3.975 14 C -0.482 4.482 15 H 0.094 0.906 16 C -0.160 4.160 17 N -0.443 5.443 18 Si 0.780 3.220 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.194 1.194 22 C -0.208 4.208 23 N -0.166 5.166 24 C -0.122 4.122 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.144 0.856 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.211 13.835 7.926 20.707 hybrid contribution 0.287 -0.412 -0.158 0.526 sum -12.924 13.423 7.768 20.188 Atomic orbital electron populations 1.22455 0.86440 1.02489 1.01085 1.61906 1.09254 1.14650 1.43348 1.22403 1.00765 0.87698 1.01294 1.21000 1.00275 0.89284 0.92145 1.19767 0.95114 0.95167 0.98388 1.21278 0.96021 0.96123 1.00708 1.21286 0.99939 0.93200 0.98559 1.21404 0.93330 1.00948 0.99089 1.18717 0.93991 0.92824 0.97121 1.19609 0.94634 0.92481 1.06430 1.21675 1.00176 0.93232 0.97473 1.21392 0.94263 1.00595 1.04801 1.18826 0.92640 0.93373 0.92650 1.19488 1.15399 0.97430 1.15893 0.90637 1.26693 0.92048 1.01284 0.95944 1.69646 1.09959 1.40260 1.24420 0.85636 0.80346 0.78136 0.77899 1.18444 1.18843 1.19361 1.22449 0.99937 0.92126 1.06292 1.66990 1.03040 1.39482 1.07059 1.21043 0.99712 0.92717 0.98766 0.94262 0.91006 0.91707 0.91650 0.90603 0.94454 0.92231 0.90735 0.83974 0.82847 0.84693 0.83327 0.85219 0.88720 0.85602 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 127.69 1.17 1.60 16 2 N -0.57 -13.03 5.01 -953.47 -4.78 -17.80 16 3 C 0.03 0.46 9.57 127.69 1.22 1.68 16 4 C 0.10 2.33 5.11 85.56 0.44 2.77 16 5 C -0.08 -2.34 4.88 -19.90 -0.10 -2.43 16 6 C -0.12 -2.80 7.96 22.34 0.18 -2.62 16 7 C -0.11 -2.58 10.03 22.23 0.22 -2.36 16 8 C -0.13 -3.76 9.42 22.53 0.21 -3.55 16 9 C -0.03 -0.97 5.88 -20.04 -0.12 -1.08 16 10 C 0.00 0.20 6.74 41.95 0.28 0.48 16 11 C -0.11 -4.35 9.38 22.29 0.21 -4.14 16 12 C -0.19 -8.39 9.87 22.64 0.22 -8.16 16 13 C 0.03 1.53 5.12 -21.17 -0.11 1.43 16 14 C -0.45 -24.45 9.58 23.39 0.22 -24.22 16 15 H 0.08 4.24 8.06 -2.91 -0.02 4.22 16 16 C 0.06 3.07 5.41 85.28 0.46 3.53 16 17 N -0.82 -42.42 13.93 21.84 0.30 -42.12 16 18 Si 0.96 42.98 24.52 68.60 1.68 44.66 16 19 H -0.26 -11.36 6.71 99.48 0.67 -10.69 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -13.04 6.86 99.48 0.68 -12.36 16 22 C -0.05 -2.36 8.37 85.44 0.71 -1.65 16 23 N -0.46 -22.81 9.39 -182.70 -1.72 -24.53 16 24 C -0.10 -3.70 9.22 22.53 0.21 -3.49 16 25 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 27 H 0.06 1.34 6.16 -2.38 -0.01 1.33 16 28 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 29 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 1.13 8.06 -2.39 -0.02 1.11 16 32 H 0.07 1.81 8.00 -2.39 -0.02 1.80 16 33 H 0.14 2.34 8.02 -2.91 -0.02 2.32 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.14 3.44 6.15 -2.91 -0.02 3.42 16 36 H 0.15 4.77 6.15 -2.91 -0.02 4.75 16 37 H 0.13 5.28 8.06 -2.91 -0.02 5.26 16 38 H 0.30 13.92 8.30 -92.71 -0.77 13.15 16 39 H 0.13 6.45 4.72 -2.91 -0.01 6.44 16 40 H 0.10 4.16 7.52 -2.91 -0.02 4.14 16 Total: -1.00 -62.04 327.10 1.91 -60.14 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.97 Total: 21.88 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 5.44 Total: -42.22 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -6.19 Total: -84.45 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.68 Total: 44.66 kcal Total: -62.04 1.91 -60.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236413458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.044 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds